Saccharomyces paradoxus chromosome IX, complete sequence.
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces.
Contrasting evolutionary genome dynamics between domesticated and wild yeasts
Population-level Yeast Reference Genomes
Submitted (28-APR-2020) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (20-JAN-2020) Biotechnology, Delft University of Technology, van der Maasweg 9, Delft, Netherlands 2629 HZ, Netherlands
Submitted (04-FEB-2017) Institute for Research on Cancer and Aging, Nice (IRCAN), Institute for Research on Cancer and Aging, Nice (IRCAN), 28 Avenue de Valombrose, Nice, PACA 06107, France
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP020250.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 29-JAN-2017\nAssembly Method :: HGAP v. 2.3.0\nAssembly Name :: S. paradoxus CBS432 PacBio Assembly\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 112.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
culture from neotype of Saccharomyces paradoxus
protein with similarity to allantoate permease; similar to YIL166C
3-ketoacyl-CoA thiolase with broad chain length specificity; similar to YIL160C
Mitochondrial inner membrane protein; similar to YIL157C
Ubiquitin-specific protease that cleaves ubiquitin-protein fusions; similar to YIL156W
Mitochondrial glycerol-3-phosphate dehydrogenase; similar to YIL155C
Transcriptional activator involved in maintenance of ion homeostasis; similar to YIL154C
Peptidyl-prolyl cis/trans-isomerase; similar to YIL153W
Essential chromatin-associated protein; similar to YIL150C
Myosin-like protein associated with the nuclear envelope; similar to YIL149C
Transmembrane histidine phosphotransfer kinase and osmosensor; similar to YIL147C
Mitochondrial outer membrane protein required to initiate mitophagy; similar to YIL146C
Pantothenate synthase; similar to YIL145C
Component of the kinetochore-associated Ndc80 complex; similar to YIL144W
Component of RNA polymerase transcription factor TFIIH holoenzyme; similar to YIL143C
Subunit beta of the cytosolic chaperonin Cct ring complex; similar to YIL142W
Integral plasma membrane protein; similar to YIL140W
Accessory subunit of DNA polymerase zeta; similar to YIL139C
Minor isoform of tropomyosin; similar to YIL138C
Ribosome-associated protein that is involved in ribosome biogenesis; similar to YIL137C
Regulator of septin dynamics; similar to YIL135C
Protein required for transport of flavin adenine dinucleotide (FAD); similar to YIL134W
Ribosomal 60S subunit protein L16A; similar to YIL133C
Component of Shu complex (aka PCSS complex); similar to YIL132C
Forkhead family transcription factor; similar to YIL131C
Zinc cluster protein proposed to be a transcriptional regulator; similar to YIL130W
Component of the RAM signaling network; similar to YIL129C
Component of cytosolic iron-sulfur protein assembly (CIA) machinery; similar to YIL128W
ATPase component of the RSC chromatin remodeling complex; similar to YIL126W
Subunit of the mitochondrial alpha-ketoglutarate dehydrogenase complex; similar to YIL125W
Bifunctional triacylglycerol lipase and 1-acyl DHAP reductase; similar to YIL124W
Protein of the SUN family (Sim1p, Uth1p, Nca3p, Sun4p); similar to YIL123W
Plasma membrane transporter of the major facilitator superfamily; similar to YIL121W
Multidrug transporter of the major facilitator superfamily; similar to YIL120W
Transcription factor, allelic differences between S288C and Sigma1278b; similar to YIL119C
Non-essential small GTPase of the Rho/Rac family of Ras-like proteins; similar to YIL118W
Pheromone-regulated protein, predicted to have 1 transmembrane segment; similar to YIL117C
Histidinol-phosphate aminotransferase; similar to YIL116W
FG-nucleoporin component of central core of the nuclear pore complex; similar to YIL115C
mitochondrial porin (voltage-dependent anion channel); similar to YIL114C
Stress-inducible dual-specificity MAP kinase phosphatase; similar to YIL113W
Subunit of the Set3 complex; similar to YIL112W
Subunit Vb of cytochrome c oxidase; similar to YIL111W
AdoMet-dependent methyltransferase; similar to YIL110W
Component of the Sec23p-Sec24p heterodimer of the COPII vesicle coat; similar to YIL109C
metalloendopeptidase; similar to YIL108W
6-phosphofructo-2-kinase; similar to YIL107C
Component of the mitotic exit network; similar to YIL106W
Phosphoinositide PI4,5P(2) binding protein, forms a complex with Slm2p; similar to YIL105C
Protein required for synthesis of diphthamide; similar to YIL103W
Transcriptional repressor; similar to YIL101C
Intracellular sporulation-specific glucoamylase; similar to YIL099W
Mitochondrial matrix protein; similar to YIL098C
Subunit of GID complex; similar to YIL097W
Methyltransferase required for m3U2634 methylation of the 25S rRNA; similar to YIL096C
Protein serine/threonine kinase; similar to YIL095W
Homo-isocitrate dehydrogenase; similar to YIL094C
Mitochondrial ribosomal protein of the small subunit; similar to YIL093C
Integral ER membrane protein with type-III transmembrane domains; similar to YIL090W
mannosyltransferase involved in protein glycosylation; similar to YIL085C
Component of the Rpd3L histone deacetylase complex; similar to YIL084C
Subunit of the CoA-Synthesizing Protein Complex (CoA-SPC); similar to YIL083C
Zinc knuckle protein; similar to YIL079C
Threonyl-tRNA synthetase; similar to YIL078W
Epsilon-COP subunit of the coatomer; similar to YIL076W
Subunit of the 26S proteasome; similar to YIL075C
3-phosphoglycerate dehydrogenase; similar to YIL074C
Meiosis-specific protein essential for chromosome synapsis; similar to YIL073C
Meiosis-specific protein required for chromosome synapsis; similar to YIL072W
Possible shared subunit of Cop9 signalosome (CSN) and eIF3; similar to YIL071C
Acidic protein of the mitochondrial matrix; similar to YIL070C
Protein component of the small (40S) ribosomal subunit; similar to YIL069C
Essential 88kDa subunit of the exocyst complex; similar to YIL068C
Minor isoform of large subunit of ribonucleotide-diphosphate reductase; similar to YIL066C
Protein involved in mitochondrial fission and peroxisome abundance; similar to YIL065C
Lysine methyltransferase; similar to YIL064W
Subunit of the ARP2/3 complex; similar to YIL062C
Component of U1 snRNP required for mRNA splicing via spliceosome; similar to YIL061C
Transcriptional activator; similar to YIL056W
Constitutively expressed DL-glycerol-3-phosphate phosphatase; similar to YIL053W
Mitochondrial protein required for transamination of isoleucine; similar to YIL051C
Pho85p cyclin of the Pho80p subfamily; similar to YIL050W
Probable polyprenol reductase; similar to YIL049W
aminophospholipid translocase (flippase); similar to YIL048W
F-box protein containing five copies of the WD40 motif; similar to YIL046W
type-1 protein phosphatase targeting subunit; similar to YIL045W
ADP-ribosylation factor (ARF) GTPase activating protein (GAP) effector; similar to YIL044C
Microsomal cytochrome b reductase; similar to YIL043C
Mitochondrial protein kinase; similar to YIL042C
BAR domain protein that localizes to early and late Golgi vesicles; similar to YIL041W
Protein required for nuclear envelope morphology; similar to YIL040W
Conserved phosphoesterase domain-containing protein; similar to YIL039W
Subunit of CCR4-NOT global transcriptional regulator; similar to YIL038C
Pheromone-regulated protein; similar to YIL037C
Basic leucine zipper (bZIP) transcription factor, in ATF/CREB family; similar to YIL036W
Alpha catalytic subunit of casein kinase 2 (CK2); similar to YIL035C
Beta subunit of the capping protein heterodimer (Cap1p and Cap2p); similar to YIL034C
Regulatory subunit of the cyclic AMP-dependent protein kinase (PKA); similar to YIL033C
Peptidase that deconjugates Smt3/SUMO-1 peptides from proteins; similar to YIL031W
Ubiquitin-protein ligase involved in ER-associated protein degradation; similar to YIL030C
Member of conserved ER transmembrane complex; similar to YIL027C
Subunit of the cohesin complex; similar to YIL026C
Essential component of the TIM23 complex; similar to YIL022W
RNA polymerase II third largest subunit B44; similar to YIL021W
Enzyme that catalyzes the fourth step in the histidine pathway; similar to YIL020C
Protein required for pre-rRNA processing; similar to YIL019W
Ribosomal 60S subunit protein L2B; similar to YIL018W
GID Complex subunit, serves as adaptor for regulatory subunit Vid24p; similar to YIL017C
Ribosome-associated protein; similar to YIL016W
Alpha-1,3-mannosyltransferase; similar to YIL014W
ATP-binding cassette (ABC) transporter; similar to YIL013C
Nuclear thiol peroxidase; similar to YIL010W
Long chain fatty acyl-CoA synthetase; similar to YIL009W
Ubiquitin-like protein involved in thiolation of cytoplasmic tRNAs; similar to YIL008W
Proteasome-interacting protein; similar to YIL007C
Mitochondrial NAD+ transporter; similar to YIL006W
ER protein with chaperone and co-chaperone activity; similar to YIL005W
iron-sulfur cluster binding protein; similar to YIL003W
Phosphatidylinositol 4,5-bisphosphate 5-phosphatase; similar to YIL002C
Cytoplasmic RNA-binding protein; similar to YIR001C
3'-5' DNA helicase involved in error-free bypass of DNA lesions; similar to YIR002C
Cytosolic J-domain-containing protein; similar to YIR004W
Component of the U2 snRNP; similar to YIR005W
member of actin cytoskeleton-regulatory complex Pan1p-Sla1p-End3p; similar to YIR006C
Subunit of DNA primase; similar to YIR008C
U2B component of U2 snRNP; similar to YIR009W
Essential component of the MIND kinetochore complex; similar to YIR010W
Protein required for localizing proteasomes to the nucleus; similar to YIR011C
Protein involved in 60S ribosomal subunit assembly or modification; similar to YIR012W
Protein containing GATA family zinc finger motifs; similar to YIR013C
Subunit of nuclear RNase P; similar to YIR015W
bZIP transcriptional activator in the Cbf1p-Met4p-Met28p complex; similar to YIR017C
Basic leucine zipper (bZIP) iron-sensing transcription factor; similar to YIR018W
GPI-anchored cell surface glycoprotein (flocculin); similar to YIR019C
18kDa catalytic subunit of the Signal Peptidase Complex (SPC); similar to YIR022W
Positive regulator of genes in multiple nitrogen degradation pathways; similar to YIR023W
F1F0 ATP synthase peripheral stalk assembly factor; similar to YIR024C
Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C); similar to YIR025W
Ureidoglycolate lyase; similar to YIR032C
ER membrane protein involved in regulation of OLE1 transcription; similar to YIR033W
Saccharopine dehydrogenase (NAD+, L-lysine-forming); similar to YIR034C
cytoplasmic short-chain dehydrogenase/reductase; similar to YIR035C
ER associated glutathione S-transferase capable of homodimerization; similar to YIR038C