Saccharomyces paradoxus chromosome V, complete sequence.
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces.
Contrasting evolutionary genome dynamics between domesticated and wild yeasts
Population-level Yeast Reference Genomes
Submitted (28-APR-2020) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (20-JAN-2020) Biotechnology, Delft University of Technology, van der Maasweg 9, Delft, Netherlands 2629 HZ, Netherlands
Submitted (04-FEB-2017) Institute for Research on Cancer and Aging, Nice (IRCAN), Institute for Research on Cancer and Aging, Nice (IRCAN), 28 Avenue de Valombrose, Nice, PACA 06107, France
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP020246.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 29-JAN-2017\nAssembly Method :: HGAP v. 2.3.0\nAssembly Name :: S. paradoxus CBS432 PacBio Assembly\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 112.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
culture from neotype of Saccharomyces paradoxus
Protein required for sporulation; similar to YEL072W
D-lactate dehydrogenase; similar to YEL071W
Mitochondrial cell death effector; similar to YNR074C
mannitol dehydrogenase; similar to YEL070W
D-Amino acid N-acetyltransferase that detoxifies D-amino acids; similar to YEL066W
Ferrioxamine B transporter; similar to YEL065W
Plasma membrane arginine permease; similar to YEL063C
Subunit of SEA (Seh1-associated), Npr2/3, and Iml1p complexes; similar to YEL062W
Kinesin motor protein; similar to YEL061C
Vacuolar proteinase B (yscB) with H3 N-terminal endopeptidase activity; similar to YEL060C
Essential N-acetylglucosamine-phosphate mutase; similar to YEL058W
Subunit of the Hat1p-Hat2p histone acetyltransferase complex; similar to YEL056W
Ribosomal 60S subunit protein L12A; similar to YEL054C
Non-catalytic subunit of N-terminal acetyltransferase of the NatC type; similar to YEL053C
Protein that may act as a chaperone for cytochrome c oxidase subunits; similar to YEL052W
Subunit D of the V1 peripheral membrane domain of V-ATPase; similar to YEL051W
Mitochondrial ribosomal protein of the large subunit (L2); similar to YEL050C
Component of transport protein particle (TRAPP) complex II; similar to YEL048C
Soluble fumarate reductase; similar to YEL047C
Component of the INO80 chromatin remodeling complex; similar to YEL044W
Predicted cytoskeleton protein involved in intracellular signaling; similar to YEL043W
Guanosine diphosphatase located in the Golgi; similar to YEL042W
Chitin transglycosylase; similar to YEL040W
Cytochrome c isoform 2, expressed under hypoxic conditions; similar to YEL039C
Protein with sequence similarity to acireductone synthases; similar to YEL038W
Protein with ubiquitin-like N terminus; similar to YEL037C
Subunit of the alpha-1,6 mannosyltransferase complex; similar to YEL036C
Translation elongation factor eIF-5A; similar to YEL034W
Protein involved in DNA replication; similar to YEL032W
P-type ATPase, ion transporter of the ER membrane; similar to YEL031W
Heat shock protein of the Hsp70 family; similar to YEL030W
Proteolipid subunit c of the V0 domain of vacuolar H(+)-ATPase; similar to YEL027W
Ubiquinol-cytochrome-c reductase; similar to YEL024W
Guanine nucleotide exchange factor for ADP ribosylation factors (ARFs); similar to YEL022W
Orotidine-5'-phosphate (OMP) decarboxylase; similar to YEL021W
SUMO ligase and component of the SMC5-SMC6 complex; similar to YEL019C
Non-essential subunit of the NuA4 acetyltransferase complex; similar to YEL018W
Nucleotide pyrophosphatase/phosphodiesterase; similar to YEL016C
Non-essential conserved protein with a role in mRNA decapping; similar to YEL015W
Phosphorylated and palmitoylated vacuolar membrane protein; similar to YEL013W
Ubiquitin-conjugating enzyme that regulates gluconeogenesis; similar to YEL012W
Glycogen branching enzyme, involved in glycogen accumulation; similar to YEL011W
bZIP transcriptional activator of amino acid biosynthetic genes; similar to YEL009C
Transcriptional regulator of pseudohyphal growth; similar to YEL007W
mitochondrial NAD+ transporter; similar to YEL006W
Subunit of the BLOC-1 complex involved in endosomal maturation; similar to YEL005C
Uridine diphosphate-N-acetylglucosamine (UDP-GlcNAc) transporter; similar to YEL004W
Subunit of the heterohexameric cochaperone prefoldin complex; similar to YEL003W
Beta subunit of the oligosaccharyl transferase glycoprotein complex; similar to YEL002C
Alpha-1,3-mannosyltransferase; similar to YER001W
Constituent of 66S pre-ribosomal particles; similar to YER002W
Mannose-6-phosphate isomerase; similar to YER003C
Apyrase with wide substrate specificity; similar to YER005W
GTPase that associates with nuclear 60S pre-ribosomes; similar to YER006W
Microtubule effector required for tubulin heterodimer formation; similar to YER007W
Subunit of the exocyst complex; similar to YER008C
Nuclear envelope protein; similar to YER009W
Bifunctional HMG aldolase/oxaloacetate decarboxylase; similar to YER010C
Cell wall mannoprotein; similar to YER011W
Beta 4 subunit of the 20S proteasome; similar to YER012W
DEAH-box RNA-dependent ATPase/ATP-dependent RNA helicase; similar to YER013W
Protoporphyrinogen oxidase; similar to YER014W
Medium chain fatty acyl-CoA synthetase; similar to YER015W
Microtubule plus end-tracking protein; similar to YER016W
Mitochondrial inner membrane m-AAA protease component; similar to YER017C
Component of the kinetochore-associated Ndc80 complex; similar to YER018C
Inositol phosphosphingolipid phospholipase C; similar to YER019W
Nucleotide binding alpha subunit of the heterotrimeric G protein; similar to YER020W
Essential non-ATPase regulatory subunit of the 26S proteasome lid; similar to YER021W
Subunit of the RNA polymerase II mediator complex; similar to YER022W
Delta 1-pyrroline-5-carboxylate reductase; similar to YER023W
Carnitine acetyltransferase; similar to YER024W
Gamma subunit of the translation initiation factor eIF2; similar to YER025W
Phosphatidylserine synthase; similar to YER026C
One of three possible beta-subunits of the Snf1 kinase complex; similar to YER027C
Transcriptional regulator; similar to YER028C
Core Sm protein Sm B; similar to YER029C
Histone chaperone for Htz1p/H2A-H2B dimer; similar to YER030W
Protein involved in 3' mRNA processing; similar to YER032W
RNA-binding protein that directly activates mRNA decapping; similar to YER035W
ATPase of the ATP-binding cassette (ABC) family; similar to YER036C
Lysophosphatidic acid (LPA) phosphatase, nucleotidase; similar to YER037W
Subunit of the SMC5-SMC6 complex; similar to YER038C
Transcriptional activator of genes regulated by nitrogen catabolite r; similar to YER040W
Holliday junction resolvase; similar to YER041W
Methionine-S-sulfoxide reductase; similar to YER042W
S-adenosyl-L-homocysteine hydrolase; similar to YER043C
Endoplasmic reticulum membrane protein; similar to YER044C
ATF/CREB family basic leucine zipper (bZIP) transcription factor; similar to YER045C
ATPase of the AAA family; similar to YER047C
Nuclear type II J heat shock protein of the dnaJ family; similar to YER048C
Fe(II)/2-oxoglutarate-dependent dioxygenase family member; similar to YER049W
Mitochondrial ribosomal protein of the small subunit; similar to YER050C
JmjC domain family histone demethylase specific for H3-K36; similar to YER051W
Aspartate kinase (L-aspartate 4-P-transferase); similar to YER052C
Mitochondrial copper and phosphate carrier; similar to YER053C
regulatory subunit of protein phosphatase Glc7p; similar to YER054C
ATP phosphoribosyltransferase; similar to YER055C
Purine-cytosine permease; similar to YER056C
Member of the p14.5 protein family; similar to YER057C
Protein required for assembly of cytochrome c oxidase; similar to YER058W
Pho85p cyclin of the Pho80p subfamily; similar to YER059W
purine-cytosine permease; similar to YER060W
Mitochondrial beta-keto-acyl synthase; similar to YER061C
DL-glycerol-3-phosphate phosphatase involved in glycerol biosynthesis; similar to YER062C
Conserved nuclear RNA-binding protein; similar to YER063W
Non-essential nuclear protein; similar to YER064C
Ubiquitin-protein ligase subunit of the CCR4-NOT complex; similar to YER068W
Acetylglutamate kinase and N-acetyl-gamma-glutamyl-phosphate reductase; similar to YER069W
Major isoform of large subunit of ribonucleotide-diphosphate reductase; similar to YER070W
Subunit of the vacuolar transporter chaperone (VTC) complex; similar to YER072W
Mitochondrial aldehyde dehydrogenase; similar to YER073W
Protein component of the small (40S) ribosomal subunit; similar to YER074W
Phosphotyrosine-specific protein phosphatase; similar to YER075C
Mitochondrial aminopeptidase; similar to YER078C
3-phosphoglycerate dehydrogenase; similar to YER081W
Subunit of the GET complex; similar to YER083C
Threonine deaminase, catalyzes first step in isoleucine biosynthesis; similar to YER086W
Protein with similarity to tRNA synthetases; similar to YER087W
Protein involved in rRNA and ribosome biogenesis; similar to YER088C
Type 2C protein phosphatase (PP2C); similar to YER089C
Anthranilate synthase; similar to YER090W
Cobalamin-independent methionine synthase; similar to YER091C
Non-essential INO80 chromatin remodeling complex subunit; similar to YER092W
Subunit of TORC2 (Tor2p-Lst8p-Avo1-Avo2-Tsc11p-Bit61p); similar to YER093C
Beta 3 subunit of the 20S proteasome; similar to YER094C
Strand exchange protein; similar to YER095W
Sporulation-specific activator of Chs3p (chitin synthase III); similar to YER096W
Ubiquitin-specific protease that cleaves ubiquitin-protein fusions; similar to YER098W
5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, synthesizes PRPP; similar to YER099C
Ubiquitin-conjugating enzyme involved in ERAD; similar to YER100W
Lipid raft associated protein; similar to YER101C
Protein component of the small (40S) ribosomal subunit; similar to YER102W
Heat shock protein that is highly induced upon stress; similar to YER103W
Protein with a role in regulation of Ty1 transposition; similar to YER104W
Subunit of the inner ring of the nuclear pore complex (NPC); similar to YER105C
RNA export factor associated with the nuclear pore complex (NPC); similar to YER107C
DNA binding component of the SBF complex (Swi4p-Swi6p); similar to YER111C
Lsm (Like Sm) protein; similar to YER112W
Protein with a role in cellular adhesion and filamentous growth; similar to YER113C
Protein implicated in polar growth, functionally redundant with Boi1p; similar to YER114C
Subunit of Slx5-Slx8 SUMO-targeted ubiquitin ligase (STUbL) complex; similar to YER116C
Ribosomal 60S subunit protein L23B; similar to YER117W
Transmembrane osmosensor for filamentous growth and HOG pathways; similar to YER118C
Vacuolar aspartate and glutamate exporter; similar to YER119C
Integral ER membrane protein, regulates phospholipid metabolism; similar to YER120W
ADP-ribosylation factor GTPase activating protein (ARF GAP); similar to YER122C
Palmitoylated vacuolar membrane-localized casein kinase I isoform; similar to YER123W
Daughter cell-specific protein; similar to YER124C
E3 ubiquitin ligase of NEDD4 family; similar to YER125W
Protein constituent of 66S pre-ribosomal particles; similar to YER126C
Essential protein involved in maturation of 18S rRNA; similar to YER127W
Protein that interacts with Vps4p and has a role in vacuolar sorting; similar to YER128W
Upstream serine/threonine kinase for the SNF1 complex; similar to YER129W
Transcription factor that binds IME1 Upstream Activation Signal (UAS); similar to YER130C
Protein component of the small (40S) ribosomal subunit; similar to YER131W
Protein with an N-terminal kelch-like domain; similar to YER132C
Magnesium-dependent acid phosphatase; similar to YER134C
GDP dissociation inhibitor; similar to YER136W
Protein required for the hydroxylation of heme O to form heme A; similar to YER141W
3-methyl-adenine DNA glycosylase; similar to YER142C
DNA damage-inducible v-SNARE binding protein; similar to YER143W
ubiquitin-specific protease; similar to YER144C
High affinity iron permease; similar to YER145C
Lsm (Like Sm) protein; similar to YER146W
Subunit of cohesin loading factor (Scc2p-Scc4p); similar to YER147C
TATA-binding protein; similar to YER148W
Coiled-coil 12S polarisome subunit; similar to YER149C
GPI-anchored cell wall protein involved in weak acid resistance; similar to YER150W
Ubiquitin-specific protease involved in transport and osmotic response; similar to YER151C
Protein with 2-aminoadipate transaminase activity; similar to YER152C
Mitochondrial translational activator specific for the COX3 mRNA; similar to YER153C
Mitochondrial inner membrane insertase; similar to YER154W
Rho GTPase activating protein (RhoGAP); similar to YER155C
Essential component of the conserved oligomeric Golgi complex; similar to YER157W
Subunit of a heterodimeric NC2 transcription regulator complex; similar to YER159C
Protein involved in negative regulation of transcription; similar to YER161C
Protein that recognizes and binds damaged DNA (with Rad23p) during NER; similar to YER162C
Gamma-glutamyl cyclotransferase; similar to YER163C
Chromatin remodeler that regulates various aspects of transcription; similar to YER164W
Poly(A) binding protein; similar to YER165W
Aminophospholipid translocase (flippase); similar to YER166W
Serine/threonine-rich protein involved in PKC1 signaling pathway; similar to YER167W
ATP (CTP):tRNA-specific tRNA nucleotidyltransferase; similar to YER168C
JmjC domain-containing histone demethylase; similar to YER169W
Mitochondrial adenylate kinase; similar to YER170W
5' to 3' DNA helicase; similar to YER171W
RNA-dependent ATPase RNA helicase (DEIH box); similar to YER172C
Glutathione-dependent oxidoreductase; similar to YER174C
Trans-aconitate methyltransferase; similar to YER175C
DNA dependent ATPase/DNA helicase; similar to YER176W
14-3-3 protein, major isoform; similar to YER177W
E1 alpha subunit of the pyruvate dehydrogenase (PDH) complex; similar to YER178W
Meiosis-specific recombinase required for repair of double-strand bre; similar to YER179W
Protein required for sporulation; similar to YER180C
5,10-methenyltetrahydrofolate synthetase; similar to YER183C
Transcriptional activator of oleate genes; similar to YER184C
Plasma membrane protein involved in protoprophyrin and heme transport; similar to YER185W