Saccharomyces paradoxus chromosome III, complete sequence.
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces.
Contrasting evolutionary genome dynamics between domesticated and wild yeasts
Population-level Yeast Reference Genomes
Submitted (28-APR-2020) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (20-JAN-2020) Biotechnology, Delft University of Technology, van der Maasweg 9, Delft, Netherlands 2629 HZ, Netherlands
Submitted (04-FEB-2017) Institute for Research on Cancer and Aging, Nice (IRCAN), Institute for Research on Cancer and Aging, Nice (IRCAN), 28 Avenue de Valombrose, Nice, PACA 06107, France
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP020244.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 29-JAN-2017\nAssembly Method :: HGAP v. 2.3.0\nAssembly Name :: S. paradoxus CBS432 PacBio Assembly\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 112.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
culture from neotype of Saccharomyces paradoxus
Proton:glutathione antiporter; similar to YCL073C
Silenced copy of ALPHA2 at HML; similar to YCL067C
Silenced copy of ALPHA1 at HML; similar to YCL066W
Catabolic L-serine (L-threonine) deaminase; similar to YCL064C
Phosphoprotein involved in vacuole inheritance; similar to YCL063W
S-phase checkpoint protein required for DNA replication; similar to YCL061C
Nucleolar protein required for rRNA synthesis and ribosomal assembly; similar to YCL059C
Zinc metalloendopeptidase; similar to YCL057W
Protein that regulates peroxisome populations; similar to YCL056C
Transcription factor required for response to pheromones; similar to YCL055W
AdoMet-dependent methyltransferase; similar to YCL054W
Component of glycosylphosphatidylinositol-mannosyltransferase I; similar to YCL052C
Protein involved in control of cell wall structure and stress response; similar to YCL051W
Nicotinamide mononucleotide-specific adenylyltransferase (NMNAT); similar to YCL047C
Member of conserved endoplasmic reticulum membrane complex; similar to YCL045C
Subunit of the mitochondrial (mt) i-AAA protease supercomplex; similar to YCL044C
Protein disulfide isomerase; similar to YCL043C
Subunit of GID Complex that binds directly to central component Vid30p; similar to YCL039W
Vacuolar integral membrane protein required for efflux of amino acids; similar to YCL038C
Cytoplasmic RNA-binding protein; similar to YCL037C
Glutathione-dependent disulfide oxidoreductase; similar to YCL035C
Methionine-R-sulfoxide reductase; similar to YCL033C
Adaptor protein for various signaling pathways; similar to YCL032W
Essential protein involved in rRNA processing and ribosome biogenesis; similar to YCL031C
Multifunctional enzyme containing phosphoribosyl-ATP pyrophosphatase; similar to YCL030C
Microtubule-associated protein; similar to YCL029C
Membrane protein localized to the shmoo tip; similar to YCL027W
Low-affinity amino acid permease with broad substrate range; similar to YCL025C
Protein kinase of the bud neck involved in the septin checkpoint; similar to YCL024W
Beta-isopropylmalate dehydrogenase (IMDH); similar to YCL018W
Cysteine desulfurase; similar to YCL017C
Subunit of a complex with Ctf8p and Ctf18p; similar to YCL016C
Protein involved in bud-site selection; similar to YCL014W
Poly(A+) RNA-binding protein; similar to YCL011C
Component of the HAT/Core module of the SAGA, SLIK, and ADA complexes; similar to YCL010C
Regulatory subunit of acetolactate synthase; similar to YCL009C
Component of the ESCRT-I complex; similar to YCL008C
Phosphatidylglycerolphosphate synthase; similar to YCL004W
Protein involved in retention of membrane proteins; similar to YCL001W
Component of the septin ring, required for cytokinesis; similar to YCR002C
Mitochondrial ribosomal protein of the large subunit; similar to YCR003W
Ser/Thr protein kinase involved in salt tolerance; similar to YCR008W
Amphiphysin-like lipid raft protein; similar to YCR009C
Acetate transporter required for normal sporulation; similar to YCR010C
ATP-dependent permease of the ABC transporter family; similar to YCR011C
3-phosphoglycerate kinase; similar to YCR012W
sensor/transporter protein involved in cell wall biogenesis; similar to YCR017C
Protein involved in the processing of pre-rRNA to mature rRNA; similar to YCR018C
Protein necessary for stability of L-A dsRNA-containing particles; similar to YCR019W
Negative regulator of the H(+)-ATPase Pma1p; similar to YCR021C
Mitochondrial asparaginyl-tRNA synthetase; similar to YCR024C
Nucleotide pyrophosphatase/phosphodiesterase; similar to YCR026C
Plasma membrane H+-pantothenate symporter; similar to YCR028C
Negative regulator of WASP-Arp23 complex; similar to YCR030C
Protein component of the small (40S) ribosomal subunit; similar to YCR031C
Subunit of the Set3C deacetylase complex; similar to YCR033W
Fatty acid elongase, involved in sphingolipid biosynthesis; similar to YCR034W
Exosome non-catalytic core component; similar to YCR035C
Low-affinity inorganic phosphate (Pi) transporter; similar to YCR037C
GTP/GDP exchange factor for Rsr1p (Bud1p); similar to YCR038C
Homeobox-domain protein; similar to YCR039C
Transcriptional co-activator that regulates mating-type-specific genes; similar to YCR040W
TFIID subunit (150 kDa); similar to YCR042C
Protein of the endoplasmic reticulum; similar to YCR044C
Probable subtilisin-family protease; similar to YCR045C
Mitochondrial ribosomal protein of the large subunit; similar to YCR046C
Acyl-CoA:sterol acyltransferase; similar to YCR048W
Component of the RSC chromatin remodeling complex; similar to YCR052W
Conserved 90S pre-ribosomal component; similar to YCR057C
Negative regulator of eIF2 kinase Gcn2p; similar to YCR059C
Component of conserved R2TP complex (Rvb1-Rvb2-Tah1-Pih1); similar to YCR060W
Component of the SF3b subcomplex of the U2 snRNP; similar to YCR063W
Forkhead transcription factor; similar to YCR065W
Integral ER membrane protein that stimulates Sar1p GTPase activity; similar to YCR067C
Lipase required for intravacuolar lysis of autophagic and Cvt bodies; similar to YCR068W
Peptidyl-prolyl cis-trans isomerase (cyclophilin); similar to YCR069W
Mitochondrial ribosomal protein of the large subunit; similar to YCR071C
WD-repeat protein involved in ribosome biogenesis; similar to YCR072C
MAP kinase kinase kinase of HOG1 mitogen-activated signaling pathway; similar to YCR073C
Protein with similarity to cystinosin; similar to YCR075C
Proteasome-binding protein; similar to YCR076C
Deadenylation-dependent mRNA-decapping factor; similar to YCR077C
Mitochondrial type 2C protein phosphatase (PP2C); similar to YCR079W
Subunit of the RNA polymerase II mediator complex; similar to YCR081W
Component of the ADA histone acetyltransferase complex; similar to YCR082W
Mitochondrial thioredoxin; similar to YCR083W
General repressor of transcription; similar to YCR084C
Nucleolar protein that mediates segregation during meiosis I; similar to YCR086W
Actin-binding protein of the cortical actin cytoskeleton; similar to YCR088W
Cell wall adhesin, expressed specifically during mating; similar to YCR089W
serine/threonine protein kinase; similar to YCR091W
Mismatch repair protein; similar to YCR092C
Component of the CCR4-NOT1 core complex; similar to YCR093W
Endosomal protein that interacts with phospholipid flippase Drs2p; similar to YCR094W
Cytoplasmic protein required for replication of Brome mosaic virus; similar to YCR095C
Silenced copy of a2 at HMR; similar to YCR096C
Silenced copy of a1 at HMR; similar to YCR097W
Plasma membrane permease; similar to YCR098C
Member of the seripauperin multigene family; similar to YLR461W