Spirosoma rhododendri strain CJU-R4 plasmid unnamed2, complete sequence.
type: Entry
definition: Spirosoma rhododendri strain CJU-R4 plasmid unnamed2, complete sequence.
sequence version: NZ_CP051679.1
sequence date: 2023-01-01
sequence: sequence
division: CON
label: NZ_CP051679.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN14609722
keyword: RefSeq
source: Spirosoma rhododendri
organism: Spirosoma rhododendri
taxonomy: Bacteria; Bacteroidota; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP051679.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS HGAP Assembly v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 140x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 01/01/2023 10:33:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,176\nCDSs (total) :: 5,122\nGenes (coding) :: 4,955\nCDSs (with protein) :: 4,955\nGenes (RNA) :: 54\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 2\nPseudo Genes (total) :: 167\nCDSs (without protein) :: 167\nPseudo Genes (ambiguous residues) :: 0 of 167\nPseudo Genes (frameshifted) :: 154 of 167\nPseudo Genes (incomplete) :: 12 of 167\nPseudo Genes (internal stop) :: 6 of 167\nPseudo Genes (multiple problems) :: 5 of 167\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 19319
topology: circular
so has quality: SO_0000988
location: 1..19319
location: region:1-19319:1
RO_0002162: 2728024

NZ_CP051679
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN14609722
type: BioSample
SIO_000068: biosample

1
title: Genome sequencing of novel species
author: Heo, J.
author: Kim, S.-J.
author: Kim, J.-S.
author: Hong, S.-B.
author: Kwon, S.-W.
journal: Unpublished

2
title: Direct Submission
author: Heo, J.
author: Kim, S.-J.
author: Kim, J.-S.
author: Hong, S.-B.
author: Kwon, S.-W.
journal: Submitted (17-APR-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, Korea, Republic of

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19319:1
position: 19319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19319:1:source
so part of: sequence
organism: Spirosoma rhododendri
mol type: genomic DNA
strain: CJU-R4
isolation source: Flower of Rhododendron schlippenbachii
culture collection: KACC:21264
type material: type strain of Spirosoma rhododendri
plasmid: unnamed2
country: South Korea: Uljin-gun
collection date: 2019-03-27
collected by: Jun Heo, Soon-Wo Kwon
identified by: Jun Heo, Soon-Wo Kwon

2728024
type: Taxonomy
SIO_000068: taxonomy

HH216_RS25380
type: Gene
subclass of: SO_0000704
RO_0002162: 2728024
locus tag: HH216_RS25380
old locus tag: HH216_25385
so part of: sequence
location: complement(join(17849..19319,1..404))
location: region:1-19319:-1
so has part: feature:1-404:-1:exon
so has part: feature:17849-19319:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19319:-1
position: 19319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-404:-1:exon

position:404:-1
position: 404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:17849-19319:-1:exon

position:17849:-1
position: 17849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HH216_RS25380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2728024
locus tag: HH216_RS25380
old locus tag: HH216_25385
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEFLKQNPFVVLSPEGKEVENTSAETIHKLFVDVFDDFKSIPEQGHVFLNGPRGSGKSMMFRFLLPDCQLIDKKKTQYNELPFFGIHIPIKLTSINNPEFDLVKDFGDYIFNEHILTMYFAELIFNSFTTLNYNNLEKSTDDLTAEIVAFYNKSFVRKLKLCGWNNQEDYDFNPKNPKEAFDIISQICFEVFTEATQYLKRNVANKSKGDQSSNVIYNGALCDYLSFLYPILKELKKLTIFPNKPIFLLVDDADNLSESQTVVLNTWVSYRSNAEVSLKISTQLNYKTYNTISGTNIDSPHDYFDINILSVYTSSKAIYNTRIRQIVQKRFEYFFERIDIDPEYFFPQDLNQIEEINKQKKLIAENFEKEGRGYRENDDIQRYAVSNYIKSLKGNSKSGHTFSYSGFNQLVNISSGIIRHFLTPAAKMFNNQYRNLKLKDPAIRYVDITQIPPSVQNEEIRDYSIKQIFDEYDKLNQDINQIKSDPKYLSKVERLRNLINGLGGLFHSYLISDRSERRVFSFAISGYPDPDLIEIINLGIRFGYFHKHTIGNKEGTGRTRLYILSRILAPCFFLDPSSFAGYKFFTSEKLLQATYRPDRFIREMTISSSDLGDLTLFNNQLDEN
SIO_010081: HH216_RS25380
subclass of: SO_0000673
so part of: HH216_RS25380
location: complement(join(17849..19319,1..404))
location: region:1-19319:-1
so has part: feature:1-404:-1:exon
so has part: feature:17849-19319:-1:exon

WP_169553727.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-404:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:17849-19319:-1:exon

HH216_RS25385
type: Gene
subclass of: SO_0000704
RO_0002162: 2728024
locus tag: HH216_RS25385
old locus tag: HH216_25390
so part of: sequence
location: complement(420..1484)
location: region:420-1484:-1
so has part: feature:420-1484:-1:exon
subclass of: SO_0000010

position:420:-1
position: 420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1484:-1
position: 1484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:420-1484:-1:exon

HH216_RS25385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2728024
locus tag: HH216_RS25385
old locus tag: HH216_25390
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDFSKHKGNFEQWFLSLNADEFPSSTDYVSTYSTIASKLKPVHSQVNLGADSNDGTSLTWHDESHIKKVIKQVSRLLSYDQATITPFESFVLLVAIQIHDIKNIEGREEHENRAISIFEELGIQGIIDSITLKNIGFIASCHAGSYIKDGKKEKDKIGNLLKPVLFNGDRRIRPQFLAALLRLADEFADDVERAMSYMLSKGMITRGSIIHQKHAESLFDTDISPNTGIVNFDYHIKVNDAKIKFPKYVSEKETYEDIFLLDEIFSRTVKSHYETVYCMRFLRPYISINKLHVSIELEHRDITHEVRISYELIEKGYPSDTLSIIELCGDQIRKNGGHWSGQNLSDYISSSRIS
SIO_010081: HH216_RS25385
subclass of: SO_0000673
so part of: HH216_RS25385
location: complement(420..1484)
location: region:420-1484:-1
so has part: feature:420-1484:-1:exon

WP_169553712.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:420-1484:-1:exon

HH216_RS25390
type: Gene
subclass of: SO_0000704
RO_0002162: 2728024
locus tag: HH216_RS25390
old locus tag: HH216_25395
so part of: sequence
location: complement(1492..2556)
location: region:1492-2556:-1
so has part: feature:1492-2556:-1:exon
subclass of: SO_0000010

position:1492:-1
position: 1492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2556:-1
position: 2556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1492-2556:-1:exon

HH216_RS25390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2728024
locus tag: HH216_RS25390
old locus tag: HH216_25395
EC number: 2.1.1.37
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005939602.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA cytosine methyltransferase
translation: MINYVGIDIFSGAGGMSIGATNAGIDVKIAVEIDKYAAYTYKKNHFDTKVYNKDIREINFENESICSDKSTVKILFGGPPCKGFSTSNQKNRNKENSNNWLFKEYLRVAKFIRPDWIIVENVKGIVETENGYFFEEIQKGLKELGYNTSYSILNAADYGIPQIRNRVFVVGSLHGISYKFPTSDVKRYVSVNDALSDLPSLNNGANFQELDYKSTPQNTYQTLLRENSLKSVNNNVTRNNDIVLKRYNHIPQGGNWQNIPSNLMSNYKDHSRCHTGIYHRLKGDSPSIVLGNYRKNMLIHPTEDRGLSVREAARLQSFPDTFHFYGSIGFQQEQVGNSVPPILAKAIFNQILTY
SIO_010081: HH216_RS25390
subclass of: SO_0000673
so part of: HH216_RS25390
location: complement(1492..2556)
location: region:1492-2556:-1
so has part: feature:1492-2556:-1:exon

WP_169553713.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1492-2556:-1:exon

HH216_RS25395
type: Gene
subclass of: SO_0000704
RO_0002162: 2728024
locus tag: HH216_RS25395
old locus tag: HH216_25400
so part of: sequence
location: complement(3816..5606)
location: region:3816-5606:-1
so has part: feature:3816-5606:-1:exon
subclass of: SO_0000010

position:3816:-1
position: 3816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5606:-1
position: 5606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3816-5606:-1:exon

HH216_RS25395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2728024
locus tag: HH216_RS25395
old locus tag: HH216_25400
inference: COORDINATES: protein motif:HMM:NF014581.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system DNA-binding domain-containing protein
translation: MTLSQDSLAKRLLSVAFVFVFCFYIFKGIIWFTFSVLGLYKSAWFGHLAEEGTFWLALGLGGYSAYIGLTSQKKAFGISPTSDTTATGQRVLQSVYTIKTRTRKIPYIHITEPERGVLVVGGAGAGKSRSVIEPIIQQTIQQGHAGLLYDFKFPTLARVATWAMHHTNTPRMMYYVNFEDLTYSHRVNPLHPDTMPTQSHADEYARAIMYNLKPEAIKKSDFWVDSAHSYLTALIWFLREEYPQYCTLPHVMALAFQPTADVVALLSTNLETRGTVASLRESVQSKAGNQTAGVVATLQTALRRINTKEIVWVLSGNDFTLDINDPARPKFVTLGNSPTLSATFSPVLALLATVAIKQMNRLGKTPSAVILDEAPTMFIPNFDQLPSTGRSNKIATVFGAQDISQIEDMYGRTKKDALLANLNNQFFGRVGHRETAQYISDIWGKQDVEQRTQGESESNRNYQKTEGRSMAHSYVERNRVKMQDVLELKVGEFYGQLVNSDFSSFKAEIDAPEPGPIPELNPVTRATTQAIKDNFAQIQADIESLFTGRSPSNGQAQSPTTPRPTTPGSTDGIPQPERNGHNLSNSQPLPGENLDF
SIO_010081: HH216_RS25395
subclass of: SO_0000673
so part of: HH216_RS25395
location: complement(3816..5606)
location: region:3816-5606:-1
so has part: feature:3816-5606:-1:exon

WP_169553714.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3816-5606:-1:exon

HH216_RS25400
type: Gene
subclass of: SO_0000704
RO_0002162: 2728024
locus tag: HH216_RS25400
old locus tag: HH216_25405
so part of: sequence
location: complement(5611..6432)
location: region:5611-6432:-1
so has part: feature:5611-6432:-1:exon
subclass of: SO_0000010

position:5611:-1
position: 5611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6432:-1
position: 6432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5611-6432:-1:exon

HH216_RS25400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2728024
locus tag: HH216_RS25400
old locus tag: HH216_25405
inference: COORDINATES: protein motif:HMM:NF040155.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5712 family protein
translation: MVTNFSSPIKGANAGSCQRLADYLEKENNQLAPNQREEFFCAQHDKVSVVDVVASIDQNGAAQGLKSGQDRFYTFTVDPSQKELAHIAGDTEQLRAYTRQVMENYAANFGKGIESGDLVWFAKIEHSRSYSHTDQAVQDGTAQKGQPKEGDQTHVHVIVSRFKEREHDRERTMSLSPLTNHRQAGGAIGNGFDRVNFIQANERSFDALTGYQREQTETFAHAKAATSAHQIDRLATREQAIKASIERDRPQQIEPLRERSHQPDQTQSNSLSL
SIO_010081: HH216_RS25400
subclass of: SO_0000673
so part of: HH216_RS25400
location: complement(5611..6432)
location: region:5611-6432:-1
so has part: feature:5611-6432:-1:exon

WP_169553715.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5611-6432:-1:exon

HH216_RS25405
type: Gene
subclass of: SO_0000704
RO_0002162: 2728024
locus tag: HH216_RS25405
old locus tag: HH216_25410
so part of: sequence
location: complement(6437..6820)
location: region:6437-6820:-1
so has part: feature:6437-6820:-1:exon
subclass of: SO_0000010

position:6437:-1
position: 6437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6820:-1
position: 6820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6437-6820:-1:exon

HH216_RS25405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2728024
locus tag: HH216_RS25405
old locus tag: HH216_25410
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019991508.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BfmA/BtgA family mobilization protein
translation: MAIHEHTTLSLERTTVEQLDRLAKQYGLTKKGLVEAMIQYFNATKADPRDHKTDNPTDAIKALDRRLISFIKQQEKEQLRPIKDELVLISRKLYELDDAKTGVGKIEHLRKMNERLRLIAEKVGVSM
SIO_010081: HH216_RS25405
subclass of: SO_0000673
so part of: HH216_RS25405
location: complement(6437..6820)
location: region:6437-6820:-1
so has part: feature:6437-6820:-1:exon

WP_169553716.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6437-6820:-1:exon

HH216_RS25410
type: Gene
subclass of: SO_0000704
RO_0002162: 2728024
locus tag: HH216_RS25410
old locus tag: HH216_25415
so part of: sequence
location: 7145..7336
location: region:7145-7336:1
so has part: feature:7145-7336:1:exon
subclass of: SO_0000010

position:7145:1
position: 7145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7336:1
position: 7336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7145-7336:1:exon

HH216_RS25410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2728024
locus tag: HH216_RS25410
old locus tag: HH216_25415
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012931456.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPSLLFKAQLIDQAGKSRIQVARILFGVDSPEEKEKTFRLICKSKYPHLHIQEPLSITPAPLD
SIO_010081: HH216_RS25410
subclass of: SO_0000673
so part of: HH216_RS25410
location: 7145..7336
location: region:7145-7336:1
so has part: feature:7145-7336:1:exon

WP_169553717.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7145-7336:1:exon

HH216_RS25415
type: Gene
subclass of: SO_0000704
RO_0002162: 2728024
locus tag: HH216_RS25415
old locus tag: HH216_25420
so part of: sequence
location: complement(7338..7670)
location: region:7338-7670:-1
so has part: feature:7338-7670:-1:exon
subclass of: SO_0000010

position:7338:-1
position: 7338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7670:-1
position: 7670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7338-7670:-1:exon

HH216_RS25415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2728024
locus tag: HH216_RS25415
old locus tag: HH216_25420
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTFLSLFHSKARAERDRQEASRIHRYEFGLREVARWTQARAAYVKDGAELTQQFEQQIARHGQQWGYDGEGMKILRSNLAAYQNRTEELIQEADHRLSYYRNIVLMKGRM
SIO_010081: HH216_RS25415
subclass of: SO_0000673
so part of: HH216_RS25415
location: complement(7338..7670)
location: region:7338-7670:-1
so has part: feature:7338-7670:-1:exon

WP_169553718.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7338-7670:-1:exon

HH216_RS25420
type: Gene
subclass of: SO_0000704
RO_0002162: 2728024
locus tag: HH216_RS25420
old locus tag: HH216_25425
so part of: sequence
location: 8182..8556
location: region:8182-8556:1
so has part: feature:8182-8556:1:exon
subclass of: SO_0000010

position:8182:1
position: 8182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8556:1
position: 8556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8182-8556:1:exon

HH216_RS25420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2728024
locus tag: HH216_RS25420
old locus tag: HH216_25425
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSTTAFATMYPPWFVSWNHFYGVILHDEAQDDEEYTWAMEPVLHEGVTRYYIIQNSPYRYQVRYVQQQALAELRAKRFNFEEANVIYQAVQRYANEFKDSVFYDRLRPLVDKLEGIARRVPYQS
SIO_010081: HH216_RS25420
subclass of: SO_0000673
so part of: HH216_RS25420
location: 8182..8556
location: region:8182-8556:1
so has part: feature:8182-8556:1:exon

WP_169553719.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8182-8556:1:exon

HH216_RS25425
type: Gene
subclass of: SO_0000704
RO_0002162: 2728024
locus tag: HH216_RS25425
old locus tag: HH216_25430
so part of: sequence
location: 9560..10504
location: region:9560-10504:1
so has part: feature:9560-10504:1:exon
subclass of: SO_0000010

position:9560:1
position: 9560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10504:1
position: 10504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9560-10504:1:exon

HH216_RS25425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2728024
locus tag: HH216_RS25425
old locus tag: HH216_25430
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019949660.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MKQIEVRHHNAITTARYEYSELQLDIFFYLLSQLRKESPDKVYEIIVKDLSNLTGKEYHYAYLREATEQMGSRMFEVETDQSLKQMWMFDRVEYMKGTGRIQIEFTNSIRPYLFELKDNFTSFQLYSALRLSSKYAKRIYAICSQWKDIGETKKTTIQELKKMLYVVDSKGNEKFKQIGEFKRFVLDESVRQINERTDLHISYTLEKQGRSFKSVAFQVKSQPLAVSPQIAATDLSNNNAPTGINDQQAHNARLFIEKINIKDARIVAQIMNSGDLVKQVNKFAYELQSGKIKADKNPAGLLLTILGLKTKKEV
SIO_010081: HH216_RS25425
subclass of: SO_0000673
so part of: HH216_RS25425
location: 9560..10504
location: region:9560-10504:1
so has part: feature:9560-10504:1:exon

WP_169553720.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9560-10504:1:exon

HH216_RS25430
type: Gene
subclass of: SO_0000704
RO_0002162: 2728024
locus tag: HH216_RS25430
old locus tag: HH216_25435
so part of: sequence
location: complement(10572..10910)
location: region:10572-10910:-1
so has part: feature:10572-10910:-1:exon
subclass of: SO_0000010

position:10572:-1
position: 10572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10910:-1
position: 10910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10572-10910:-1:exon

HH216_RS25430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2728024
locus tag: HH216_RS25430
old locus tag: HH216_25435
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPVSPKPKSRKTDASVDDKKALDFIRQGGSQPVRDEPKDQPSLQISTKGRYTTKTDPNDQVSISIKLLVSERNQINEDRARRSGRDKKSLEGWIIEAISEKLERENKRKNQS
SIO_010081: HH216_RS25430
subclass of: SO_0000673
so part of: HH216_RS25430
location: complement(10572..10910)
location: region:10572-10910:-1
so has part: feature:10572-10910:-1:exon

WP_169553721.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10572-10910:-1:exon

HH216_RS25435
type: Gene
subclass of: SO_0000704
RO_0002162: 2728024
locus tag: HH216_RS25435
old locus tag: HH216_25440
so part of: sequence
location: complement(10913..11563)
location: region:10913-11563:-1
so has part: feature:10913-11563:-1:exon
subclass of: SO_0000010

position:10913:-1
position: 10913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11563:-1
position: 11563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10913-11563:-1:exon

HH216_RS25435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2728024
locus tag: HH216_RS25435
old locus tag: HH216_25440
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019949205.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MIYTTGGIKGGSGKSTVATNLVVLLTGLERDVLLVDADDQETSTDFTALREERTDSKAGYTAIQLSGTAILKQIPKLAERYQDIVIDTGGRDTDSQRAALTVSDVYLVPFKPRSFDIWTIEKVQSIVEQAQVINQKLRAFVFLNMADPRGEENFEAAELLQQSESLEFVKSTLGHRKAFSNAAANGLGVLELKGDEKAAIEFRNLYESIQTSLTSR
SIO_010081: HH216_RS25435
subclass of: SO_0000673
so part of: HH216_RS25435
location: complement(10913..11563)
location: region:10913-11563:-1
so has part: feature:10913-11563:-1:exon

WP_169553722.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10913-11563:-1:exon

HH216_RS25440
type: Gene
subclass of: SO_0000704
RO_0002162: 2728024
locus tag: HH216_RS25440
old locus tag: HH216_25445
so part of: sequence
location: complement(12770..13453)
location: region:12770-13453:-1
so has part: feature:12770-13453:-1:exon
subclass of: SO_0000010

position:12770:-1
position: 12770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13453:-1
position: 13453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12770-13453:-1:exon

HH216_RS25440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2728024
locus tag: HH216_RS25440
old locus tag: HH216_25445
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013921743.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MQTLPQTFVAYYRVSTKKQGQSGLGLDAQRSSVLSFVKDRTQLIGEFCDIESGKNDQRPELLKAVQFAKQHNARLVIAKLDRLSRNLTFVSSLMDSRVSFVCADMPDANEFTIHIFAALAQQERKMISERTKKALDEKLLRIGQWRKGANSFLRPEVSRKAAQSNRQRAADNEHNRKATELIVALRAANVSYLEIARRLNRAGFRTAQGHHFQATQVIRLASRLNKP
SIO_010081: HH216_RS25440
subclass of: SO_0000673
so part of: HH216_RS25440
location: complement(12770..13453)
location: region:12770-13453:-1
so has part: feature:12770-13453:-1:exon

WP_169553723.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12770-13453:-1:exon

HH216_RS25445
type: Gene
subclass of: SO_0000704
RO_0002162: 2728024
locus tag: HH216_RS25445
old locus tag: HH216_25450
so part of: sequence
location: 14160..16004
location: region:14160-16004:1
so has part: feature:14160-16004:1:exon
subclass of: SO_0000010

position:14160:1
position: 14160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16004:1
position: 16004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14160-16004:1:exon

HH216_RS25445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2728024
locus tag: HH216_RS25445
old locus tag: HH216_25450
inference: COORDINATES: protein motif:HMM:TIGR00229.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PAS domain S-box protein
translation: MQTKIDLYQKTVPLAQLGIWEHNLLTGELYWNTIVRAIYEVAADFTPSLKQTLQFYPDKEAVRGLINQVLQTHQPKTGVFQLQAISGRVKWVRLRANVHLERDVCTTIHGTLEDITQERASIQANLAQEQQFHQAFDFAPIGMALVSLAGNWLKANDSLCQLLGYTEAELRQITFQEITFGDDLASDLNQMHRLLAGTIDRYSIEKRYIHKRGQLIWTLLHVSLVRDQQNTPLYFVSQIKDISERKNYIELLQWQRQRLDNIIQSTGVGTWEWDVPSDNVICNPRASAIVGYDPDELSDCQMTAWHKLIHPDDQLANTQLLTQCFQHQMDFYVSECRMRHKDGYWIWVEIRGKVMEWTSSGQPRFMLGTYLDIHARRSLQEEQRKTLTVVSNQNSRLLNFAHIVSHNLRSHAGNIQMLTDMLIQEVDEQERQEYITMLQLNATNLQETLLHLNEVINVQAVDKRSKKPVGLRHEVERILTILSEPLRQVEAQVQTEISEQLVVHYDPAYLESVLLNLVSNCIKYRHPDRVLSIRLVALPVAEGHQLQVIDNGVGIDLKRHGHKLFGMYKTFHGNADARGIGLFLIKHQIEAMAGQLSVESQVNAGTTFTVTIQA
SIO_010081: HH216_RS25445
subclass of: SO_0000673
so part of: HH216_RS25445
location: 14160..16004
location: region:14160-16004:1
so has part: feature:14160-16004:1:exon

WP_169553724.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14160-16004:1:exon

HH216_RS25450
type: Gene
subclass of: SO_0000704
RO_0002162: 2728024
locus tag: HH216_RS25450
old locus tag: HH216_25455
so part of: sequence
location: 16008..16397
location: region:16008-16397:1
so has part: feature:16008-16397:1:exon
subclass of: SO_0000010

position:16008:1
position: 16008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16397:1
position: 16397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16008-16397:1:exon

HH216_RS25450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2728024
locus tag: HH216_RS25450
old locus tag: HH216_25455
inference: COORDINATES: protein motif:HMM:NF012301.2
GO process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: response regulator
translation: MRKPTTICVIDDDRMYTLILGKQLKATSCCDNLLVFHHGLAAWEYFSPLMALAERLPDIILLDLNMPVMDGWQFLDEFSQLKPAKPITIYIVSSSIDPADHQKAATYPAVAHFYIKPISRNDLAAIVGT
SIO_010081: HH216_RS25450
subclass of: SO_0000673
so part of: HH216_RS25450
location: 16008..16397
location: region:16008-16397:1
so has part: feature:16008-16397:1:exon

WP_169553725.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16008-16397:1:exon

HH216_RS25455
type: Gene
subclass of: SO_0000704
RO_0002162: 2728024
locus tag: HH216_RS25455
old locus tag: HH216_25460
so part of: sequence
location: complement(16881..17849)
location: region:16881-17849:-1
so has part: feature:16881-17849:-1:exon
subclass of: SO_0000010

position:16881:-1
position: 16881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16881-17849:-1:exon

HH216_RS25455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2728024
locus tag: HH216_RS25455
old locus tag: HH216_25460
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKVSLTQLPKHLLPKYDIFIASASYEERSLSVMRSVLPEVSFIDRVVSVSMPHLELIKSNLKFFIENGFSVLEIDNTNQILTARNILEVIVSTISDNRDASFLIDISTFTRQTLLILVRLLRNLLGSNNAIHFLYTCAKEYAVGLPEREKWLSKGIIEVNSVYGYLGVIKPSRPYHLIILMGYELERAISLINAYEPSLITVGYGKKNGSISDEHYKLNKIRIEELICEYPNAKSFEFSCTDIETSKKDILNHINLYKGFNTILSPMNNKIATIACGLAAFEDDTIQISIAIPAIYNHENYSSPGDECYILNVPSLVKDLEP
SIO_010081: HH216_RS25455
subclass of: SO_0000673
so part of: HH216_RS25455
location: complement(16881..17849)
location: region:16881-17849:-1
so has part: feature:16881-17849:-1:exon

WP_169553726.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16881-17849:-1:exon