Cohnella herbarum strain MFER-1 plasmid unnamed1.
Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Cohnella.
Submitted (17-APR-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP051681.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS HGAP Assembly v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 84x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/04/2022 14:38:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 7,214\nCDSs (total) :: 7,121\nGenes (coding) :: 6,985\nCDSs (with protein) :: 6,985\nGenes (RNA) :: 93\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 68\nncRNAs :: 4\nPseudo Genes (total) :: 136\nCDSs (without protein) :: 136\nPseudo Genes (ambiguous residues) :: 0 of 136\nPseudo Genes (frameshifted) :: 54 of 136\nPseudo Genes (incomplete) :: 91 of 136\nPseudo Genes (internal stop) :: 11 of 136\nPseudo Genes (multiple problems) :: 19 of 136\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_019419129.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_018758095.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015736594.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009334035.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019423398.1
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF018184.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: similar to AA sequence:RefSeq:WP_013372320.1
COORDINATES: protein motif:HMM:NF014430.2
COORDINATES: similar to AA sequence:RefSeq:WP_013312523.1
COORDINATES: protein motif:HMM:NF014081.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012692.2
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: similar to AA sequence:RefSeq:WP_006675891.1
COORDINATES: protein motif:HMM:NF012738.2
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013429.2
COORDINATES: protein motif:HMM:NF014893.2
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: similar to AA sequence:RefSeq:WP_019419130.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009224935.1
COORDINATES: similar to AA sequence:RefSeq:WP_019383418.1
COORDINATES: protein motif:HMM:NF012514.2
COORDINATES: similar to AA sequence:RefSeq:WP_009226925.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009226924.1
COORDINATES: similar to AA sequence:RefSeq:WP_019007443.1
COORDINATES: protein motif:HMM:NF013752.2
COORDINATES: protein motif:HMM:NF012789.2
COORDINATES: similar to AA sequence:RefSeq:WP_003443920.1
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: protein motif:HMM:NF021498.2
COORDINATES: similar to AA sequence:RefSeq:WP_018131863.1
SbcC/MukB-like Walker B domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018131864.1
COORDINATES: similar to AA sequence:RefSeq:WP_018131865.1
COORDINATES: protein motif:HMM:NF012472.2
COORDINATES: similar to AA sequence:RefSeq:WP_003869601.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013310386.1
COORDINATES: similar to AA sequence:RefSeq:WP_013310385.1
COORDINATES: similar to AA sequence:RefSeq:WP_013310384.1
COORDINATES: similar to AA sequence:RefSeq:NP_388229.2
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019713282.1
GO:0043801 - hexulose-6-phosphate synthase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019533950.1
GO:0016853 - isomerase activity [Evidence IEA]
GO:1901135 - carbohydrate derivative metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014278599.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00229.1
GO:0005515 - protein binding [Evidence IEA]
PAS domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: nucleotide motif:Rfam:14.4:RF01051
cyclic di-GMP riboswitch class I; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_019536798.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007127587.1
glutathione-dependent formaldehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_019382139.1
COORDINATES: similar to AA sequence:RefSeq:WP_011458832.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012301821.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013073.2
COORDINATES: similar to AA sequence:RefSeq:WP_015042172.1
COORDINATES: similar to AA sequence:RefSeq:WP_009901667.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_014652075.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_017437717.1
COORDINATES: similar to AA sequence:RefSeq:WP_019537537.1
COORDINATES: similar to AA sequence:RefSeq:WP_009672936.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018152750.1
COORDINATES: similar to AA sequence:RefSeq:WP_013917106.1
ArsI/CadI family heavy metal resistance metalloenzyme
COORDINATES: similar to AA sequence:RefSeq:WP_014649714.1
GO:0030612 - arsenate reductase (thioredoxin) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006037006.1
COORDINATES: similar to AA sequence:RefSeq:WP_013917103.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: protein motif:HMM:NF013607.2
COORDINATES: similar to AA sequence:RefSeq:WP_006509955.1
COORDINATES: similar to AA sequence:RefSeq:WP_016117858.1
mercury resistance transcriptional regulator MerR1
COORDINATES: similar to AA sequence:RefSeq:WP_003345835.1
COORDINATES: similar to AA sequence:RefSeq:WP_016086110.1
COORDINATES: similar to AA sequence:RefSeq:WP_000229528.1
COORDINATES: similar to AA sequence:RefSeq:WP_000277008.1
COORDINATES: similar to AA sequence:RefSeq:WP_016766453.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017690603.1
COORDINATES: similar to AA sequence:RefSeq:WP_005827575.1
GO:0015116 - sulfate transmembrane transporter activity [Evidence IEA]
GO:0008272 - sulfate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019005369.1
COORDINATES: similar to AA sequence:RefSeq:WP_019908637.1
COORDINATES: protein motif:HMM:NF012696.2
COORDINATES: protein motif:HMM:NF013791.2
COORDINATES: similar to AA sequence:RefSeq:WP_019004687.1
cytochrome d ubiquinol oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_019416194.1
COORDINATES: similar to AA sequence:RefSeq:WP_018131608.1
COORDINATES: similar to AA sequence:RefSeq:WP_019635212.1
rhodanese-like domain-containing protein
COORDINATES: protein motif:HMM:NF012790.2
COORDINATES: similar to AA sequence:RefSeq:WP_019635214.1
COORDINATES: similar to AA sequence:RefSeq:WP_016819043.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003183753.1
COORDINATES: similar to AA sequence:RefSeq:WP_012683834.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006039532.1
COORDINATES: similar to AA sequence:RefSeq:WP_007505451.1
COORDINATES: similar to AA sequence:RefSeq:WP_019258961.1
COORDINATES: similar to AA sequence:RefSeq:WP_006039533.1
COORDINATES: similar to AA sequence:RefSeq:WP_019007840.1
COORDINATES: similar to AA sequence:RefSeq:WP_019007839.1
COORDINATES: similar to AA sequence:RefSeq:WP_014368298.1
SH3 domain-containing C40 family peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_019007799.1
bifunctional metallophosphatase/5'-nucleotidase
COORDINATES: protein motif:HMM:NF014567.2
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_019007795.1
COORDINATES: similar to AA sequence:RefSeq:WP_009595650.1
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: similar to AA sequence:RefSeq:WP_020072866.1
COORDINATES: similar to AA sequence:RefSeq:WP_015042171.1
COORDINATES: similar to AA sequence:RefSeq:WP_002606280.1
COORDINATES: similar to AA sequence:RefSeq:WP_017689844.1
COORDINATES: similar to AA sequence:RefSeq:WP_010274539.1
COORDINATES: similar to AA sequence:RefSeq:WP_010274540.1
COORDINATES: similar to AA sequence:RefSeq:WP_015042124.1
COORDINATES: similar to AA sequence:RefSeq:WP_006428302.1
COORDINATES: similar to AA sequence:RefSeq:WP_010274543.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015042128.1
COORDINATES: similar to AA sequence:RefSeq:WP_015042129.1
COORDINATES: similar to AA sequence:RefSeq:WP_015042162.1
COORDINATES: similar to AA sequence:RefSeq:WP_010274552.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010274554.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_007130981.1
DUF3991 and TOPRIM domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007130982.1
COORDINATES: similar to AA sequence:RefSeq:WP_007130983.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025561.2
COORDINATES: protein motif:HMM:NF025107.2
COORDINATES: similar to AA sequence:RefSeq:WP_019007432.1
COORDINATES: similar to AA sequence:RefSeq:WP_007130988.1
copper amine oxidase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007130989.1
COORDINATES: similar to AA sequence:RefSeq:WP_007130990.1
COORDINATES: similar to AA sequence:RefSeq:WP_019007342.1
COORDINATES: similar to AA sequence:RefSeq:WP_007130992.1
COORDINATES: similar to AA sequence:RefSeq:WP_007130993.1
COORDINATES: similar to AA sequence:RefSeq:WP_007130994.1
Flp pilus assembly complex ATPase component TadA
COORDINATES: similar to AA sequence:RefSeq:WP_019007338.1
COORDINATES: similar to AA sequence:RefSeq:WP_009226902.1
COORDINATES: similar to AA sequence:RefSeq:WP_007131636.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_015042144.1
COORDINATES: similar to AA sequence:RefSeq:WP_010075174.1
COORDINATES: similar to AA sequence:RefSeq:WP_002172034.1
COORDINATES: similar to AA sequence:RefSeq:WP_019390476.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611565.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016876.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_013490502.1
COORDINATES: similar to AA sequence:RefSeq:WP_019639218.1
COORDINATES: similar to AA sequence:RefSeq:WP_010267423.1
COORDINATES: protein motif:HMM:NF014670.2
COORDINATES: protein motif:HMM:NF015786.2
COORDINATES: protein motif:HMM:NF025633.2
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_014600171.1