Mucilaginibacter robiniae strain F39-2 plasmid unnamed1, complete sequence.
Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.
Submitted (17-APR-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP051683.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS HGAP Assembly v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 91x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/26/2022 11:47:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,383\nCDSs (total) :: 4,323\nGenes (coding) :: 4,295\nCDSs (with protein) :: 4,295\nGenes (RNA) :: 60\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 28\nCDSs (without protein) :: 28\nPseudo Genes (ambiguous residues) :: 0 of 28\nPseudo Genes (frameshifted) :: 7 of 28\nPseudo Genes (incomplete) :: 18 of 28\nPseudo Genes (internal stop) :: 6 of 28\nPseudo Genes (multiple problems) :: 3 of 28\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Mucilaginibacter robiniae
COORDINATES: similar to AA sequence:RefSeq:WP_014771895.1
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015330611.1
COORDINATES: protein motif:HMM:NF024554.2
COORDINATES: similar to AA sequence:RefSeq:WP_008504373.1
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: similar to AA sequence:RefSeq:WP_018625973.1
COORDINATES: similar to AA sequence:RefSeq:WP_007658711.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015648.2
COORDINATES: protein motif:HMM:NF024738.2
topoisomerase C-terminal repeat-containing protein
COORDINATES: protein motif:HMM:NF024745.2
COORDINATES: protein motif:HMM:NF037521.2
zincin-like metallopeptidase domain-containing protein
COORDINATES: protein motif:HMM:NF013700.2
COORDINATES: similar to AA sequence:RefSeq:WP_019599731.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008506561.1
COORDINATES: similar to AA sequence:RefSeq:WP_019599728.1
COORDINATES: similar to AA sequence:RefSeq:WP_008512958.1
COORDINATES: similar to AA sequence:RefSeq:WP_014021291.1
COORDINATES: similar to AA sequence:RefSeq:WP_019599722.1
COORDINATES: similar to AA sequence:RefSeq:WP_010601171.1
COORDINATES: similar to AA sequence:RefSeq:WP_008675930.1
GO:0032991 - protein-containing complex [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0032196 - transposition [Evidence IEA]
TraG family conjugative transposon ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_019599719.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480019.1
COORDINATES: protein motif:HMM:NF024961.2
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF017524.2
plasmid mobilization relaxosome protein MobC
COORDINATES: protein motif:HMM:NF012422.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008505245.1
COORDINATES: similar to AA sequence:RefSeq:WP_006875104.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010304151.1
COORDINATES: protein motif:HMM:NF016362.2
COORDINATES: similar to AA sequence:RefSeq:WP_004920096.1
COORDINATES: similar to AA sequence:RefSeq:WP_014938453.1
COORDINATES: protein motif:HMM:NF037736.2
COORDINATES: similar to AA sequence:RefSeq:WP_015039060.1
COORDINATES: similar to AA sequence:RefSeq:WP_000960105.1
COORDINATES: similar to AA sequence:RefSeq:WP_008241132.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_008503945.1
COORDINATES: similar to AA sequence:RefSeq:WP_015811409.1
COORDINATES: similar to AA sequence:RefSeq:WP_015808951.1
COORDINATES: similar to AA sequence:RefSeq:WP_013663546.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008245505.1
COORDINATES: similar to AA sequence:RefSeq:WP_002981231.1
COORDINATES: similar to AA sequence:RefSeq:WP_015808865.1
COORDINATES: similar to AA sequence:RefSeq:WP_017258705.1
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017258706.1
COORDINATES: protein motif:HMM:NF012612.2
GO:0005507 - copper ion binding [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: protein motif:HMM:NF025013.2
COORDINATES: similar to AA sequence:RefSeq:WP_012931096.1
COORDINATES: similar to AA sequence:RefSeq:WP_002993225.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020601498.1
COORDINATES: similar to AA sequence:RefSeq:WP_013931252.1
COORDINATES: similar to AA sequence:RefSeq:WP_008245524.1
COORDINATES: similar to AA sequence:RefSeq:WP_009090974.1
COORDINATES: similar to AA sequence:RefSeq:WP_018478871.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008158078.1
COORDINATES: similar to AA sequence:RefSeq:WP_018343999.1
heavy metal-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017730677.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019990927.1
COORDINATES: similar to AA sequence:RefSeq:WP_016195957.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF027890.2
efflux RND transporter periplasmic adaptor subunit
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013768946.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00054.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015808496.1