Haloarcula marismortui ATCC 43049 plasmid pNG600, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea
Submitted (09-APR-2004) Institute for Systems Biology, 1441 N 34th Street, Seattle, WA 98103, USA
REFSEQ INFORMATION: The reference sequence is identical to\nAY596295.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/30/2022 01:57:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,403\nCDSs (total) :: 4,341\nGenes (coding) :: 4,257\nCDSs (with protein) :: 4,257\nGenes (RNA) :: 62\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 2\nPseudo Genes (total) :: 84\nCDSs (without protein) :: 84\nPseudo Genes (ambiguous residues) :: 0 of 84\nPseudo Genes (frameshifted) :: 34 of 84\nPseudo Genes (incomplete) :: 58 of 84\nPseudo Genes (internal stop) :: 22 of 84\nPseudo Genes (multiple problems) :: 25 of 84\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008458794.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011222392.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594458.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594457.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014053517.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053516.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825236.1
COORDINATES: similar to AA sequence:RefSeq:WP_014557033.1
COORDINATES: similar to AA sequence:RefSeq:WP_014557034.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008387649.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458671.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594626.1
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008364385.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048662.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364388.1
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008364390.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594621.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594620.1
COORDINATES: similar to AA sequence:RefSeq:WP_008848061.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008387748.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594617.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594616.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594615.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594614.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594613.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
plastocyanin/azurin family copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594612.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048650.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048649.1
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF024804.2
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011844707.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594607.1
COORDINATES: similar to AA sequence:RefSeq:WP_008002768.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004594605.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222412.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594603.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594602.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048647.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594599.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048645.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008005422.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594594.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594592.1
GO:0003994 - aconitate hydratase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015299305.1
COORDINATES: similar to AA sequence:RefSeq:WP_004515578.1
COORDINATES: similar to AA sequence:RefSeq:WP_004515577.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008364398.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183484.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183483.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594581.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011222424.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594579.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004594578.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594577.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_014051874.1
COORDINATES: similar to AA sequence:RefSeq:WP_004518545.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594571.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594570.1
type II CAAX endopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594569.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594568.1
COORDINATES: protein motif:HMM:NF014665.2
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
GO:0006784 - heme A biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594566.1
TFIIB-type zinc ribbon-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594565.1
COORDINATES: similar to AA sequence:RefSeq:WP_008387949.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594563.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594562.1
GO:0004062 - aryl sulfotransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008523610.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594560.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_004594559.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594558.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594557.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594556.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594555.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594554.1
COORDINATES: similar to AA sequence:RefSeq:WP_009365844.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594552.1
COORDINATES: similar to AA sequence:RefSeq:WP_009378317.1
twin-arginine translocation signal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594550.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594549.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594548.1
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006184771.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364405.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014053092.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517785.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594541.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592043.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592042.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517781.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594537.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594536.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594535.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594534.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004517776.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594522.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594521.1
COORDINATES: similar to AA sequence:RefSeq:WP_008443524.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517773.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594519.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594528.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517770.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517762.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014557028.1
COORDINATES: similar to AA sequence:RefSeq:WP_006433271.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222449.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043411.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594506.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048595.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444945.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825398.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825399.1
COORDINATES: similar to AA sequence:RefSeq:WP_008526039.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183447.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594499.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183361.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048585.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222456.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222457.1
COORDINATES: similar to AA sequence:RefSeq:WP_015911446.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004595479.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592251.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222461.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458763.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517742.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458767.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053409.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592238.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594488.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594487.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594486.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004048574.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182356.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048572.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048571.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048570.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594480.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517739.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183341.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825213.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006184814.1
COORDINATES: protein motif:HMM:NF012780.2
COORDINATES: similar to AA sequence:RefSeq:WP_009488166.1
COORDINATES: similar to AA sequence:RefSeq:WP_006092954.1
COORDINATES: similar to AA sequence:RefSeq:WP_007992457.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825219.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_015299360.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524567.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524566.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035178.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222493.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458786.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524479.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524481.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458789.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458790.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524486.1