Haloarcula marismortui ATCC 43049 plasmid pNG500, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea
Submitted (09-APR-2004) Institute for Systems Biology, 1441 N 34th Street, Seattle, WA 98103, USA
REFSEQ INFORMATION: The reference sequence is identical to\nAY596294.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/30/2022 01:57:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,403\nCDSs (total) :: 4,341\nGenes (coding) :: 4,257\nCDSs (with protein) :: 4,257\nGenes (RNA) :: 62\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 2\nPseudo Genes (total) :: 84\nCDSs (without protein) :: 84\nPseudo Genes (ambiguous residues) :: 0 of 84\nPseudo Genes (frameshifted) :: 34 of 84\nPseudo Genes (incomplete) :: 58 of 84\nPseudo Genes (internal stop) :: 22 of 84\nPseudo Genes (multiple problems) :: 25 of 84\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004516630.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014039908.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966933.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289547.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012996983.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011222276.1
GO:0004803 - transposase activity [Evidence IEA]
IS5-like element ISHma11 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_076611240.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013035246.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592189.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222280.1
IS5-like element ISHma6 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_007189995.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007189730.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011222285.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736722.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592164.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222288.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966761.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222290.1
IS6-like element ISH17 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_005533818.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030573.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222295.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_011222296.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189976.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222140.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966747.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966746.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189970.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189968.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011222301.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030754.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592168.1
COORDINATES: similar to AA sequence:RefSeq:WP_008097231.1
COORDINATES: protein motif:HMM:NF038197.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222305.1
IS6-like element ISH15 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011222252.1
IS4-like element ISHma1 family transposase
COORDINATES: protein motif:HMM:NF013752.2
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007189963.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222309.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189961.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612197.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592222.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488264.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188990.1
COORDINATES: similar to AA sequence:RefSeq:WP_004062803.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035611.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188991.1
COORDINATES: similar to AA sequence:RefSeq:WP_010903158.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015233380.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010890432.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611936.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004967021.1
COORDINATES: similar to AA sequence:RefSeq:WP_009378103.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011222322.1
ISH6-like element ISHma5 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011223694.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967013.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222324.1
COORDINATES: similar to AA sequence:RefSeq:WP_004598932.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594981.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004592211.1
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: similar to AA sequence:RefSeq:WP_014555220.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035031.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035688.1
COORDINATES: similar to AA sequence:RefSeq:WP_007344137.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611400.1
COORDINATES: protein motif:HMM:TIGR02928.1
COORDINATES: similar to AA sequence:RefSeq:WP_005533600.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030728.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592311.1
COORDINATES: similar to AA sequence:RefSeq:WP_008313559.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030731.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030732.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222345.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222346.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030734.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004592304.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222351.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594499.1
COORDINATES: similar to AA sequence:RefSeq:WP_008313850.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966779.1
COORDINATES: similar to AA sequence:RefSeq:WP_008313651.1
COORDINATES: similar to AA sequence:RefSeq:WP_008306867.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966088.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030591.1
COORDINATES: protein motif:HMM:NF037096.2
COORDINATES: similar to AA sequence:RefSeq:WP_014030760.1
COORDINATES: similar to AA sequence:RefSeq:WP_007190015.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966486.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004966487.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966098.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030996.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966100.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594579.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008313784.1
COORDINATES: similar to AA sequence:RefSeq:WP_007997445.1
COORDINATES: similar to AA sequence:RefSeq:WP_004515887.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013035722.1
IS630-like element ISH16 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004060789.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188623.1
IS200/IS605-like element ISHma12 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_006884331.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011572285.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188619.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289545.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188055.1
COORDINATES: protein motif:HMM:NF036897.2
COORDINATES: similar to AA sequence:RefSeq:WP_010890462.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222229.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188624.1
HVO_2072 family ArtA-dependent S-layer glycoprotein
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004966966.1
COORDINATES: similar to AA sequence:RefSeq:WP_008313828.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966299.1
COORDINATES: similar to AA sequence:RefSeq:WP_004965335.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298676.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.