Haloarcula marismortui ATCC 43049 plasmid pNG400, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea
Submitted (09-APR-2004) Institute for Systems Biology, 1441 N 34th Street, Seattle, WA 98103, USA
REFSEQ INFORMATION: The reference sequence is identical to\nAY596293.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/30/2022 01:57:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,403\nCDSs (total) :: 4,341\nGenes (coding) :: 4,257\nCDSs (with protein) :: 4,257\nGenes (RNA) :: 62\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 2\nPseudo Genes (total) :: 84\nCDSs (without protein) :: 84\nPseudo Genes (ambiguous residues) :: 0 of 84\nPseudo Genes (frameshifted) :: 34 of 84\nPseudo Genes (incomplete) :: 58 of 84\nPseudo Genes (internal stop) :: 22 of 84\nPseudo Genes (multiple problems) :: 25 of 84\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011222227.1
GO:0004803 - transposase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
IS1595-like element ISHma4 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_007189717.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011222229.1
IS5-like element ISHma10 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_005533745.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004592290.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966466.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966465.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876022.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258830.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189736.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966072.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222240.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189739.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222242.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966322.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189742.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189743.1
COORDINATES: similar to AA sequence:RefSeq:WP_012795367.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967263.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182386.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222247.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004966316.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189749.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966314.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222252.1
IS4-like element ISHma1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011222254.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189753.1
type IV pilin N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011222256.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966303.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222258.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966299.1
COORDINATES: similar to AA sequence:RefSeq:WP_008313828.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222262.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966820.1
COORDINATES: similar to AA sequence:RefSeq:WP_005532655.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524857.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015789204.1
GO:0003674 - molecular_function [Evidence IEA]
type I-B CRISPR-associated protein Cas8b/Csh1
COORDINATES: similar to AA sequence:RefSeq:WP_008164963.1
type I-B CRISPR-associated protein Cas7/Csh2
COORDINATES: similar to AA sequence:RefSeq:WP_004064674.1
type I-B CRISPR-associated protein Cas5b
COORDINATES: similar to AA sequence:RefSeq:WP_020220936.1
COORDINATES: similar to AA sequence:RefSeq:WP_015789200.1
COORDINATES: similar to AA sequence:RefSeq:WP_008324573.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]
type I-B CRISPR-associated endonuclease Cas1b
COORDINATES: similar to AA sequence:RefSeq:WP_006648201.1