Gluconacetobacter diazotrophicus PA1 5 plasmid pGDIA01, complete sequence.
type: Entry
definition: Gluconacetobacter diazotrophicus PA1 5 plasmid pGDIA01, complete sequence.
sequence version: NC_011367.1
sequence date: 2023-04-24
sequence: sequence
division: CON
label: NC_011367.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02598444
keyword: RefSeq
source: Gluconacetobacter diazotrophicus PA1 5
organism: Gluconacetobacter diazotrophicus PA1 5
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.
reference: 1
references: 21304715
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP001190.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4082943\nSource DNA and organism available from Eric W. Triplett\n(ewt@ufl.edu)\nContacts: Eric W. Triplett (ewt@ufl.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/24/2023 01:10:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,694\nCDSs (total) :: 3,623\nGenes (coding) :: 3,557\nCDSs (with protein) :: 3,557\nGenes (RNA) :: 71\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 4\nPseudo Genes (total) :: 66\nCDSs (without protein) :: 66\nPseudo Genes (ambiguous residues) :: 0 of 66\nPseudo Genes (frameshifted) :: 17 of 66\nPseudo Genes (incomplete) :: 59 of 66\nPseudo Genes (internal stop) :: 2 of 66\nPseudo Genes (multiple…

sequence
subclass of: SO_0000155
sequence length: 27455
topology: circular
so has quality: SO_0000988
location: 1..27455
location: region:1-27455:1
RO_0002162: 272568

NC_011367
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02598444
type: BioSample
SIO_000068: biosample

1
title: Two genome sequences of the same bacterial strain, Gluconacetobacter diazotrophicus PAl 5, suggest a new standard in genome sequence submission
author: Giongo, A.
author: Tyler, H.L.
author: Zipperer, U.N.
author: Triplett, E.W.
journal: Stand Genomic Sci
volume: 2
issue: 3
pages: 309-317
year: 2010
pubmed: 21304715
comments: Publication Status: Online-Only

21304715
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Glavina del Rio, T.
author: Dalin, E.
author: Tice, H.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Chertkov, O.
author: Brettin, T.
author: Detter, J.C.
author: Han, C.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Ovchinnikova, G.
author: Triplett, E.W.
journal: Submitted (09-OCT-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27455:1
position: 27455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-27455:1:source
so part of: sequence
organism: Gluconacetobacter diazotrophicus PA1 5
mol type: genomic DNA
strain: PAl 5; ATCC 49037
culture collection: ATCC:49037
type material: type strain of Gluconacetobacter diazotrophicus
plasmid: pGDIA01

272568
type: Taxonomy
SIO_000068: taxonomy

GDIA_RS18880
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS18880
pseudo: true
so part of: sequence
location: complement(<2..244)
location: region:2-244:-1
so has part: feature:2-244:-1:exon
subclass of: SO_0000010

position:2:-1
position: 2
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:244:-1
position: 244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2-244:-1:exon

GDIA_RS18880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS18880
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010165325.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: replication initiation protein
SIO_010081: GDIA_RS18880
subclass of: SO_0000673
so part of: GDIA_RS18880
location: complement(<2..244)
location: region:2-244:-1
so has part: feature:2-244:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2-244:-1:exon

GDIA_RS18885
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS18885
old locus tag: Gdia_3552
so part of: sequence
location: 933..1613
location: region:933-1613:1
so has part: feature:933-1613:1:exon
subclass of: SO_0000010

position:933:1
position: 933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1613:1
position: 1613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:933-1613:1:exon

GDIA_RS18885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS18885
old locus tag: Gdia_3552
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010165325.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MAALNFGFNEPIVSYAGGNERIEASLLRLMGTIAIVTIRKDGKSYKRRVQLLGPSDESLEKDGFLHYRIPEELIEILQNSEVYARLKTQVMYCFESKYTLCLYEMTERRIGLEYKQTEEFTIEELRGLLNVPDGKLERFADLNKYCLKVATEEINKLCPFYVDFSPIKKGRKVERIAFHWFPKTSSGKRDAQILIDQHRIVRRAKLRGLAAELPLLLDFGTEPPEK
SIO_010081: GDIA_RS18885
subclass of: SO_0000673
so part of: GDIA_RS18885
location: 933..1613
location: region:933-1613:1
so has part: feature:933-1613:1:exon

WP_244455152.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:933-1613:1:exon

GDIA_RS17900
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS17900
old locus tag: Gdia_3553
so part of: sequence
location: complement(2092..2745)
location: region:2092-2745:-1
so has part: feature:2092-2745:-1:exon
subclass of: SO_0000010

position:2092:-1
position: 2092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2745:-1
position: 2745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2092-2745:-1:exon

GDIA_RS17900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS17900
old locus tag: Gdia_3553
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019092320.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MQTWAVIAQKGGQSKTTIATAFAVEAASEGAAVVILDADDRQGSALYWSERREADDVMVKDSSVAGLPLHVSRGRNSGKLDLIIIDTPANSKDIAMLAAEQADFVVIPVAPRGLDVHSVLQTVKQVQQAGTPFAVILTQVPHQGGEGSDARAGFTAKGITMFDTVLHFRKDFYRATPIGKTAVELEPDGKAAVELRAAYAEAKRLSGYTNKRVSEAV
SIO_010081: GDIA_RS17900
subclass of: SO_0000673
so part of: GDIA_RS17900
location: complement(2092..2745)
location: region:2092-2745:-1
so has part: feature:2092-2745:-1:exon

WP_012555424.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2092-2745:-1:exon

GDIA_RS17905
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS17905
old locus tag: Gdia_3554
pseudo: true
so part of: sequence
location: complement(2863..3442)
location: region:2863-3442:-1
so has part: feature:2863-3442:-1:exon
subclass of: SO_0000010

position:2863:-1
position: 2863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3442:-1
position: 3442
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2863-3442:-1:exon

GDIA_RS17905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS17905
old locus tag: Gdia_3554
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010512413.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: site-specific integrase
SIO_010081: GDIA_RS17905
subclass of: SO_0000673
so part of: GDIA_RS17905
location: complement(2863..3442)
location: region:2863-3442:-1
so has part: feature:2863-3442:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2863-3442:-1:exon

GDIA_RS17910
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS17910
old locus tag: Gdia_3555
so part of: sequence
location: complement(3535..3831)
location: region:3535-3831:-1
so has part: feature:3535-3831:-1:exon
subclass of: SO_0000010

position:3535:-1
position: 3535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3831:-1
position: 3831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3535-3831:-1:exon

GDIA_RS17910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS17910
old locus tag: Gdia_3555
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012554521.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: WGR domain-containing protein
translation: MPKAPHPAPSRPLQPLPLFPEAAELQHVVPAANRWRFYRLSLQDDLFGGTALLRHWGRIGTQGQLRLDLHADRGQAQAALATLLRQKVKRGYQPRGKT
SIO_010081: GDIA_RS17910
subclass of: SO_0000673
so part of: GDIA_RS17910
location: complement(3535..3831)
location: region:3535-3831:-1
so has part: feature:3535-3831:-1:exon

WP_012555425.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3535-3831:-1:exon

GDIA_RS17915
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS17915
old locus tag: Gdia_3556
so part of: sequence
location: complement(3994..4278)
location: region:3994-4278:-1
so has part: feature:3994-4278:-1:exon
subclass of: SO_0000010

position:3994:-1
position: 3994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4278:-1
position: 4278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3994-4278:-1:exon

GDIA_RS17915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS17915
old locus tag: Gdia_3556
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010516184.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKAIAAREGGLRFEVFLPSTLADWLLDLIERGVFFDPSEAVFVLLGEAKDLVPYQDLRDEQRPGIPAAEVTARMREEMARPYPVPATWRMDKEP
SIO_010081: GDIA_RS17915
subclass of: SO_0000673
so part of: GDIA_RS17915
location: complement(3994..4278)
location: region:3994-4278:-1
so has part: feature:3994-4278:-1:exon

WP_012555426.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3994-4278:-1:exon

GDIA_RS17920
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS17920
old locus tag: Gdia_3557
so part of: sequence
location: complement(4283..4663)
location: region:4283-4663:-1
so has part: feature:4283-4663:-1:exon
subclass of: SO_0000010

position:4283:-1
position: 4283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4663:-1
position: 4663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4283-4663:-1:exon

GDIA_RS17920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS17920
old locus tag: Gdia_3557
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014101617.1
GO function: GO:0016301 - kinase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system death-on-curing family toxin
translation: MTDYLTVIEVLAIHDDQIGRYGGATGIRDRGLLEAALFRPQTGYYADLIEEAAALWESLSQNHPFIDGNKRTAFAVTWTFLAINGARLTAGAGETEDFILGLYAAGTFDFEHLKPWLRGHVAIIES
SIO_010081: GDIA_RS17920
subclass of: SO_0000673
so part of: GDIA_RS17920
location: complement(4283..4663)
location: region:4283-4663:-1
so has part: feature:4283-4663:-1:exon

WP_012555427.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4283-4663:-1:exon

GDIA_RS17925
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS17925
old locus tag: Gdia_3558
so part of: sequence
location: complement(4660..4890)
location: region:4660-4890:-1
so has part: feature:4660-4890:-1:exon
subclass of: SO_0000010

position:4660:-1
position: 4660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4890:-1
position: 4890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4660-4890:-1:exon

GDIA_RS17925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS17925
old locus tag: Gdia_3558
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010516188.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVTPQREKFATQVDPQILQAVRDLARSEGRQLQALVDEALADLVEKRKQQRPRVHVMAAYQASHEEFAPLYRKLAE
SIO_010081: GDIA_RS17925
subclass of: SO_0000673
so part of: GDIA_RS17925
location: complement(4660..4890)
location: region:4660-4890:-1
so has part: feature:4660-4890:-1:exon

WP_012555428.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4660-4890:-1:exon

GDIA_RS17930
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS17930
old locus tag: Gdia_3559
so part of: sequence
location: 5103..5522
location: region:5103-5522:1
so has part: feature:5103-5522:1:exon
subclass of: SO_0000010

position:5103:1
position: 5103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5522:1
position: 5522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5103-5522:1:exon

GDIA_RS17930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS17930
old locus tag: Gdia_3559
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRISGISSILDNATAQSSSGATTQKSGILQSSSLDFSNISASNLQDVNAELYNQGKISLRQSGDLSLLDGWALKGVNNGQLRQSSTGTLNAYSLLDTMINYQETNGIGDVKDTVASLKALRSTLEEYDTNNQNKTAITA
SIO_010081: GDIA_RS17930
subclass of: SO_0000673
so part of: GDIA_RS17930
location: 5103..5522
location: region:5103-5522:1
so has part: feature:5103-5522:1:exon

WP_012555429.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5103-5522:1:exon

GDIA_RS18130
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS18130
old locus tag: Gdia_3560
so part of: sequence
location: complement(5559..6146)
location: region:5559-6146:-1
so has part: feature:5559-6146:-1:exon
subclass of: SO_0000010

position:5559:-1
position: 5559
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6146:-1
position: 6146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5559-6146:-1:exon

GDIA_RS18130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS18130
old locus tag: Gdia_3560
inference: COORDINATES: protein motif:HMM:NF027544.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4879 domain-containing protein
translation: MKSVFLKSFAAILSVSVLAGAPVGSAFAQATKTAPKTAGVFKRKLSFPAPAGMSQSATGAIQPREPAPNISAERVIFIISTNTAPNGESIAEGQTTTALDEGGAQMETYVMETGYGSGYPKITMAGQTISPGALEERDLYCVENGLVTVPCDPGYTAVGYIYIINLSGYQSGQFTFYNTSQNNPNVTGSTFLNVL
SIO_010081: GDIA_RS18130
subclass of: SO_0000673
so part of: GDIA_RS18130
location: complement(5559..6146)
location: region:5559-6146:-1
so has part: feature:5559-6146:-1:exon

WP_012555430.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5559-6146:-1:exon

GDIA_RS17940
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS17940
so part of: sequence
location: 6649..6879
location: region:6649-6879:1
so has part: feature:6649-6879:1:exon
subclass of: SO_0000010

position:6649:1
position: 6649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6879:1
position: 6879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6649-6879:1:exon

GDIA_RS17940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS17940
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAIRKDDDISRNISAADMADALIRSCGWSQARKKAHTHVMRCIETDQPEEAAFWATVRNALDHLVSAEPKANEMIH
SIO_010081: GDIA_RS17940
subclass of: SO_0000673
so part of: GDIA_RS17940
location: 6649..6879
location: region:6649-6879:1
so has part: feature:6649-6879:1:exon

WP_144880451.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6649-6879:1:exon

GDIA_RS17945
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS17945
old locus tag: Gdia_3561
so part of: sequence
location: 7136..7999
location: region:7136-7999:1
so has part: feature:7136-7999:1:exon
subclass of: SO_0000010

position:7136:1
position: 7136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7999:1
position: 7999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7136-7999:1:exon

GDIA_RS17945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS17945
old locus tag: Gdia_3561
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYVSVAKAGTIVDSLSTREKSKEGGGTLLTSDQPDSAETGHAETESVSITLSQAAVDALNGTASQNTPASMQLAMSRMDQIIRSGNSAAKADAGARVANLQAQMRQLMETKDLMSPKALAAALALMARELAAAVSEYVQCGGSAANAAIGTVVLSASADTSADPSTAAPATSVTADQPVASVPQDATQEQSAQGQTAPGQSGQQTQEGNAVDHSSDETEQTAGAANTQPKESGDDLFAKAVKSLAEEMKSILNELKNKKKKDDASEDHDLQSTQGSLDRIDQMIGGI
SIO_010081: GDIA_RS17945
subclass of: SO_0000673
so part of: GDIA_RS17945
location: 7136..7999
location: region:7136-7999:1
so has part: feature:7136-7999:1:exon

WP_012555431.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7136-7999:1:exon

GDIA_RS18895
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS18895
old locus tag: Gdia_3562
so part of: sequence
location: 8400..9458
location: region:8400-9458:1
so has part: feature:8400-9458:1:exon
subclass of: SO_0000010

position:8400:1
position: 8400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9458:1
position: 9458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8400-9458:1:exon

GDIA_RS18895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS18895
old locus tag: Gdia_3562
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012553782.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTVTATYTENADFYNSPALPANLGLTMFNANGYSGIISLAATDSTYIGGDYNVGGSRYWLGSLWLGGISNPSSSQQVAIDITTDNTDVGLFEFSPSAGSAANFIFFGGNNDSISISNQVETGETMDLSKTTFEQWSSTAGWQTSNVNVIIHGTAGNDYFTGSNQNNYLFEGIGNSIFNQSAGNDIISTNASDGTSNTYYAKDALTSYEGGYVDENNNSYMNNGDDWLLQDTANGKIISLTNVGSVVIGGVTYSASVENSALPWTNASSSSASAADAHTLLASIATGSGLQASTLAESALNALADNSVGTSPVSAQSENLSYSIGGAAALIGAHDSSIGTIVPDDKSSTAALA
SIO_010081: GDIA_RS18895
subclass of: SO_0000673
so part of: GDIA_RS18895
location: 8400..9458
location: region:8400-9458:1
so has part: feature:8400-9458:1:exon

WP_012555432.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8400-9458:1:exon

GDIA_RS17950
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS17950
old locus tag: Gdia_3563
so part of: sequence
location: 9588..10631
location: region:9588-10631:1
so has part: feature:9588-10631:1:exon
subclass of: SO_0000010

position:9588:1
position: 9588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10631:1
position: 10631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9588-10631:1:exon

GDIA_RS17950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS17950
old locus tag: Gdia_3563
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLLTISDAAAFDLTTMVLLSSVSSGSPVSLSPAGLGITASNGVATMSHTEASAASRSLESKLTASDGTENGVNQIAALFSTAAATINSSTTSDAEKIDAFKTVASISTAARYSDLPETVKDASQIADLEKAFYTSTGNSTFIQTAVSMADATSLPNGATSLETELYDAIQELRDPANFATTSYSGTEKIAGGASSATAMTLTGSAALMTSASTSAIGVSFTYGISRQEIENAQIMPGDVDPASVGRAHVVTSTGSETINQSAAIASGESIALPQSNEIVGAKISTAAVQTTTSASTSGTSIPAGVFTFTAPNASTDSHLSLLQEIADMLGSTSSKKEPSKQNASALS
SIO_010081: GDIA_RS17950
subclass of: SO_0000673
so part of: GDIA_RS17950
location: 9588..10631
location: region:9588-10631:1
so has part: feature:9588-10631:1:exon

WP_012555433.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9588-10631:1:exon

GDIA_RS17955
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS17955
old locus tag: Gdia_3564
so part of: sequence
location: complement(10685..11521)
location: region:10685-11521:-1
so has part: feature:10685-11521:-1:exon
subclass of: SO_0000010

position:10685:-1
position: 10685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11521:-1
position: 11521
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10685-11521:-1:exon

GDIA_RS17955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS17955
old locus tag: Gdia_3564
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012222260.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5-like element ISGdi1 family transposase
translation: MVTWTGIARREHSREGLRYPSDMTDGEWALIMPFVPPAKRGGRPRTTDMREVVNAMLYIASAGCAWRLLPKCFPPVSTVRRYFYAWRGAGVFEVMNTVLVMSLREIEGREASPSAGVIDSQSVKTTESGGLSGYDAGKKVKGRKRHIVTDTCGFLIFLLVHAADIQDRDGAVDVLAAIRRRFPWLRHIFADGGYAGDKLRSALASMGKWTLEIIRRSDTAKGFQILPRRWVVERTFAWLGRCRRLAKDWEQSIASSTAWTLIASIRMLTRRTARHCHG
SIO_010081: GDIA_RS17955
subclass of: SO_0000673
so part of: GDIA_RS17955
location: complement(10685..11521)
location: region:10685-11521:-1
so has part: feature:10685-11521:-1:exon

WP_012222260.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10685-11521:-1:exon

GDIA_RS18905
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS18905
old locus tag: Gdia_3565
so part of: sequence
location: complement(11661..13184)
location: region:11661-13184:-1
so has part: feature:11661-13184:-1:exon
subclass of: SO_0000010

position:11661:-1
position: 11661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13184:-1
position: 13184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11661-13184:-1:exon

GDIA_RS18905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS18905
old locus tag: Gdia_3565
inference: COORDINATES: protein motif:HMM:NF019843.2
GO function: GO:0005515 - protein binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tetratricopeptide repeat protein
translation: MISIRRIFDGNTYRSAKKLYKNGKYYLESKDGADPIKAAKLFFLAASKGVAEAHYYLGLCYLEGKGVPRNRTLAIRELTVAAKAGLGEAMVHLSFQYLEGFPSFEGASHFAHLVKDERKCANIFDVKASEYWAKKAIEAGAAEGHVCLGYIYSSVDPDRRNIDLAIEHYETAMQAGNRKAGLGLGQILLQYRSAEAESIRKAEKSLLFAIEEKNPTAAYLLGGLYEVGSGVEKDLSRSRQFYQIAAEGGVVKAMVRLSQLLFDGEGGSPDQIKGETWLRQAAIKGDGAACRLLAGIYSTRARDDEARRWYETGAKLGDPIAAFRLAEAIEKLQGSGAMPVEAMEWYIRALKSGYEPAAIKLCTMLFNKEMREFGNNILMRIEELSNQGNPLAHLVLAAHIRSSPNGDMHHARCLLINASEAGVVTAHSAAGEMIMKGLGGRADIGLAIGFFRKAADAGHLDAMYALATLYKNRRSLYYNHTKAEFWTRRAAAGGHVAANNMLKEFNI
SIO_010081: GDIA_RS18905
subclass of: SO_0000673
so part of: GDIA_RS18905
location: complement(11661..13184)
location: region:11661-13184:-1
so has part: feature:11661-13184:-1:exon

WP_081434772.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11661-13184:-1:exon

GDIA_RS17965
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS17965
old locus tag: Gdia_3566
so part of: sequence
location: complement(13228..14619)
location: region:13228-14619:-1
so has part: feature:13228-14619:-1:exon
subclass of: SO_0000010

position:13228:-1
position: 13228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14619:-1
position: 14619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13228-14619:-1:exon

GDIA_RS17965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS17965
old locus tag: Gdia_3566
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012553779.1
GO process: GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HlyD family type I secretion periplasmic adaptor subunit
translation: METDSFDYADLPPALLEFHSPTAALVNMPATPSARYISWIIGALTASSIVFMMVFPLTRVVSTEGKIVSIQRPLVVQPFETSIIRSVDVREGDLVHKGQVLSRLDPTVNDADIANLKSQTQSYTAEVARLSAEAQGRDYLSDPDDPASIQQAATFLRRKAEFAAKIENYQEQLASQAADLQGALANATIYAKRLEVATNVHRMRTRLQEEQVGSRLSTLGAQNDMMEVQRSEVLAQHDAASAKAKLQALVAERQEYIETWRADIYRDLSEAQHKLSTTDADYQKAKLRKSMTILTAQEDAVVLTIARLSPGSVLTTGAELMRLVPVDSGLEVEVHLSSKDAGFVQPGNKAIIKFAAFPYSQYGGAEALVREISADTFDGNTSQDAVSNGGIGQRASNDPAAAAQSYYRARLHIEDYRLHGVPSSFHPRPGMPITADIQVGTRTIMQFLLNNLIPLMTDGMREP
SIO_010081: GDIA_RS17965
subclass of: SO_0000673
so part of: GDIA_RS17965
location: complement(13228..14619)
location: region:13228-14619:-1
so has part: feature:13228-14619:-1:exon

WP_012555435.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13228-14619:-1:exon

GDIA_RS17970
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS17970
old locus tag: Gdia_3567
so part of: sequence
location: complement(14697..16826)
location: region:14697-16826:-1
so has part: feature:14697-16826:-1:exon
subclass of: SO_0000010

position:14697:-1
position: 14697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16826:-1
position: 16826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14697-16826:-1:exon

GDIA_RS17970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS17970
old locus tag: Gdia_3567
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008854254.1
GO component: GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO function: GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: peptidase domain-containing ABC transporter
translation: MDFRPEPNETSPSPASLARWLNDSGAVAKGMRIEWRHLVKMRNSPPIVLMFRDGSAALMVNAEPIRGVVLLRDPMAEETEAPVSVDEMRLSEIWNGDILLVKRQQDQSEADAPINMAWLARMVLREKKSLRDITFASLTLSVLQIFPPLAVMQVIDRVVNNRSMATLVSIAAIVLMLSIYEILLSFGRRELTLILTTRIDARISLHIFNRLLALPLEYFEQQQAGNIIGRVMAIYKVRDFMTGRLMSTFLDMFTLVVILPFLFYLSSTLAWMTVATAGMIGVVIAVFMRPVGRIYGWLVKAEAERSSVMYETVAGIRTVKTLALEPARKQEWDRRTADVVRWKLSVGRMANWPTTLTMPMEMFINRGIILVGAYLALTNASTVGVGALVAFMMLGGRVATPLVGVARLLDDLNEVMTSLAEAGSVLNQATETKALTEGMRPRIKGALSFNAVNFTYPGSTTKALNDVSFSIPAGTMLGLVGRSGSGKSTITRLLQGVSRSYEGYLKLDGIDLREINLTHLRRSLGVVLQDNFLFRGSIRDNIIAGRPGLTIDDVVRAARLAGAEEFIERLPAGYDTWIEEGSTNISGGQRQRLAIARALISDPKLLILDEATSALDPESEALVSANIEQMGKGRTMIIVSHRLSSLVNCDRILVMEHGRVADIGPHEVLLERCATYRALWMQQNRHMERHAHKNRIDEPGLKSSDSQGG
SIO_010081: GDIA_RS17970
subclass of: SO_0000673
so part of: GDIA_RS17970
location: complement(14697..16826)
location: region:14697-16826:-1
so has part: feature:14697-16826:-1:exon

WP_169307529.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14697-16826:-1:exon

GDIA_RS17975
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS17975
old locus tag: Gdia_3568
so part of: sequence
location: complement(17231..17893)
location: region:17231-17893:-1
so has part: feature:17231-17893:-1:exon
subclass of: SO_0000010

position:17231:-1
position: 17231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17893:-1
position: 17893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17231-17893:-1:exon

GDIA_RS17975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS17975
old locus tag: Gdia_3568
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003630665.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6118 family protein
translation: MSEIDPAARAFDDLRAEVSVLRRAVESLPAAWHENRPPDYSPDLGRIVNALRAVGEGLKAVEATPMLKSEPSAYRYAVEQAGMAASQRMQNTFDGAIREVQAERKRLAGIIGEARDRERQRWWVLGAAGLAFLCGLGVAAPLFREIPWEGDLRIASFIVGGDGGWDSGRTMMSAANPDAWKNLLWEERVVQSNYEKVKACQDEANKSKATEGCIIGVKPD
SIO_010081: GDIA_RS17975
subclass of: SO_0000673
so part of: GDIA_RS17975
location: complement(17231..17893)
location: region:17231-17893:-1
so has part: feature:17231-17893:-1:exon

WP_012555437.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17231-17893:-1:exon

GDIA_RS17980
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS17980
old locus tag: Gdia_3569
so part of: sequence
location: complement(17893..18315)
location: region:17893-18315:-1
so has part: feature:17893-18315:-1:exon
subclass of: SO_0000010

position:18315:-1
position: 18315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17893-18315:-1:exon

GDIA_RS17980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS17980
old locus tag: Gdia_3569
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019087205.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapC family toxin
translation: MILLDTNVISEPWKPAPEPGVLAWIDAQAIKTLFLSAVTVAELRFGIGVMPAGRRRAVLHERLEQEVLPLFEGRVLPFDLAASQAYAELMVRARSEGRAIGKADGYIAATAASRGYAVASRDVSPFEAAGVRVLNPWENV
SIO_010081: GDIA_RS17980
subclass of: SO_0000673
so part of: GDIA_RS17980
location: complement(17893..18315)
location: region:17893-18315:-1
so has part: feature:17893-18315:-1:exon

WP_012555438.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17893-18315:-1:exon

GDIA_RS17985
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS17985
old locus tag: Gdia_3570
so part of: sequence
location: complement(18312..18563)
location: region:18312-18563:-1
so has part: feature:18312-18563:-1:exon
subclass of: SO_0000010

position:18312:-1
position: 18312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18563:-1
position: 18563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18312-18563:-1:exon

GDIA_RS17985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS17985
old locus tag: Gdia_3570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019087318.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid stabilization protein
translation: MSSVVIRNLPEETHRALKAQAMLHGRSTEAEIRTILEAAVRPSQRVRLGSLLASIGREAGVREQDVAALQARDQTPAEPISFE
SIO_010081: GDIA_RS17985
subclass of: SO_0000673
so part of: GDIA_RS17985
location: complement(18312..18563)
location: region:18312-18563:-1
so has part: feature:18312-18563:-1:exon

WP_012555439.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18312-18563:-1:exon

GDIA_RS17990
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
gene: traA
locus tag: GDIA_RS17990
old locus tag: Gdia_3571
so part of: sequence
location: complement(18630..21686)
location: region:18630-21686:-1
so has part: feature:18630-21686:-1:exon
subclass of: SO_0000010

position:18630:-1
position: 18630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21686:-1
position: 21686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18630-21686:-1:exon

GDIA_RS17990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
gene: traA
locus tag: GDIA_RS17990
old locus tag: Gdia_3571
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019088721.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Ti-type conjugative transfer relaxase TraA
translation: MAIYHLHAKLISRATGRSAVAAAAYRSASRLHDDRLDRAHDFTNKSGVVHSEILLPDGAPKRLADRSTLWNEVEAIEKRKDAQLSREVEFSIPREMTQEQGIGLARDFVREQFVDRGMVADLNVHWDIGEDGLAKPHAHVMLSTRTVDETGFGAKGREWNSKALLAEWRERWASLANERLVEIGLDVRIDHRSFAEQGIDLEPQNKIGPAGMRREERGEDAERAADHEEIARRNGERLIAEPSLALEALTRQQSTFTRQDLARFVDRQTADAEQFAAAMAKVEASPELVALGKDGRGRARYSTRAMVAVERRLEEASLELGGRTSHGVPLAVRRAAMTREGLGEEQALAVGEVTRSRDLSVVIGYAGTGKSTMLGVAREAWEEAGYRVRGAALSGIAAEGLEAGSGIESRTLASLERGWEKGFDLLECGDVLVVDEAGMVGSRQLERVLSAARDAGAKVVLVGDPEQLQAIEAGGAFRAVAERVGSVEITAVRRQRAGWQQEATKELATGRTEAALDRYEAAGMVHGHDTLEEARAGVVAEWDAARRAAPGERSIMLAHRRVDVQALNEAARAIRLEVGELEAGVEVTVATAQGDRQFAIEERVYFLRNDRGLGVKNGTLGTVRGLYGMDEEKVLLSVQLDGPAGPGTGQIVSVRTWEYDALDHGYAATIHKSQGVTVDRVHALGTGSMDRHGAYVVLSRHRDRVDLHWARDDVGSREGLVAKLSRERLKDTTLDYGPGRGAERDATAAYARRRGFRVPESEIGVERAAAREEPDRSAGADAAPVRGRGMFDGLVLNARPVSGRDAAAGKEKEAGREAPASPFAGLKLNPDRRERLPAVVGMTPGDDPLVKAVNRYARAWMDAGRMMEQGLPVLEHQKRTLHEAGVGLDQVRRGAVEDLASALKHEPAIRDAMREMEGLARARTLIEGIEREETIRRSPDLRAARFVREWDGLSREQRGDALKELKRDAQLESLMREKKRALGIAPGSDLDQALRRQREQSITRTISRSRGRGMDMGM
SIO_010081: GDIA_RS17990
subclass of: SO_0000673
so part of: GDIA_RS17990
location: complement(18630..21686)
location: region:18630-21686:-1
so has part: feature:18630-21686:-1:exon

WP_043459676.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18630-21686:-1:exon

GDIA_RS17995
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS17995
old locus tag: Gdia_3572
so part of: sequence
location: 21848..22177
location: region:21848-22177:1
so has part: feature:21848-22177:1:exon
subclass of: SO_0000010

position:21848:1
position: 21848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22177:1
position: 22177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21848-22177:1:exon

GDIA_RS17995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS17995
old locus tag: Gdia_3572
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011995934.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraD
translation: MRKPRDIDGELKALQERARALKAQRTVQLGELVEATGADVLDLETLAGVLLAAVEQAHGKPEAVARWTERGAAFFQAGGKKSARKGKAGAASEPHRSGSPDRQAGGSLI
SIO_010081: GDIA_RS17995
subclass of: SO_0000673
so part of: GDIA_RS17995
location: 21848..22177
location: region:21848-22177:1
so has part: feature:21848-22177:1:exon

WP_049763054.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21848-22177:1:exon

GDIA_RS18000
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS18000
old locus tag: Gdia_3573
so part of: sequence
location: 22206..22478
location: region:22206-22478:1
so has part: feature:22206-22478:1:exon
subclass of: SO_0000010

position:22206:1
position: 22206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22478:1
position: 22478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22206-22478:1:exon

GDIA_RS18000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS18000
old locus tag: Gdia_3573
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012813363.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraD
translation: MRDWARARRERTRHLIELGGLVQKAGLVELTDDDRATMLGAFLDLANQIRGYGDTPSDSLKIRWRRAGLRAFDAEKDAPGKEEETDREKR
SIO_010081: GDIA_RS18000
subclass of: SO_0000673
so part of: GDIA_RS18000
location: 22206..22478
location: region:22206-22478:1
so has part: feature:22206-22478:1:exon

WP_012555442.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22206-22478:1:exon

GDIA_RS18005
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS18005
old locus tag: Gdia_3574
so part of: sequence
location: 22541..23098
location: region:22541-23098:1
so has part: feature:22541-23098:1:exon
subclass of: SO_0000010

position:22541:1
position: 22541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23098:1
position: 23098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22541-23098:1:exon

GDIA_RS18005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS18005
old locus tag: Gdia_3574
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014106730.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MucR family transcriptional regulator
translation: MTTDVPHAPDQKSAADQTGLLALTAAIVSAYAARNPLPAIELPGLIRTVYDALSSLGQVTTSPAAPEPIPAVPPKKSVFPDHIICLEDGKPFKALKRHLRAAYGMTPEDYRAKWKLPPDYPMVAPNYAAYRSSQARAIGLGGSMAASTSLADTDQPDATSAKDLPAEPPITRLPERRRGRRPKSA
SIO_010081: GDIA_RS18005
subclass of: SO_0000673
so part of: GDIA_RS18005
location: 22541..23098
location: region:22541-23098:1
so has part: feature:22541-23098:1:exon

WP_012555443.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22541-23098:1:exon

GDIA_RS19340
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS19340
so part of: sequence
location: complement(23215..23649)
location: region:23215-23649:-1
so has part: feature:23215-23649:-1:exon
subclass of: SO_0000010

position:23215:-1
position: 23215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23649:-1
position: 23649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23215-23649:-1:exon

GDIA_RS19340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS19340
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MALLDEAPVAIVCTMAVRMVGSVNHQRQSTSALSVRVEWVGRAVRTAKNDGSSSGDRRGEARRDAALNKKAGRNVPAFLLFRRLSSSWGEDYSCVVLAFILPLSGRPVQWKPAVLRKISRICAGFGREIQMQPVRWDVRPFPAF
SIO_010081: GDIA_RS19340
subclass of: SO_0000673
so part of: GDIA_RS19340
location: complement(23215..23649)
location: region:23215-23649:-1
so has part: feature:23215-23649:-1:exon

WP_144880454.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23215-23649:-1:exon

GDIA_RS18015
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS18015
old locus tag: Gdia_3575
so part of: sequence
location: complement(23734..24156)
location: region:23734-24156:-1
so has part: feature:23734-24156:-1:exon
subclass of: SO_0000010

position:23734:-1
position: 23734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24156:-1
position: 24156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23734-24156:-1:exon

GDIA_RS18015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS18015
old locus tag: Gdia_3575
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006053134.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapC family toxin
translation: MIVLDTNILSELMRSEPDQSVLAWMSSQPLTTLFTTSITQAEILYGLALLPEGRRRDMLVAAARAMFEEDFSGRILSFDGEAAQAYADIASRRRQDGEPISQFDAQIAAVTRSRGAALATRNTRDFIRCGITLLNPWGDA
SIO_010081: GDIA_RS18015
subclass of: SO_0000673
so part of: GDIA_RS18015
location: complement(23734..24156)
location: region:23734-24156:-1
so has part: feature:23734-24156:-1:exon

WP_012555444.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23734-24156:-1:exon

GDIA_RS18020
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS18020
old locus tag: Gdia_3576
so part of: sequence
location: complement(24153..24398)
location: region:24153-24398:-1
so has part: feature:24153-24398:-1:exon
subclass of: SO_0000010

position:24153:-1
position: 24153
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24398:-1
position: 24398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24153-24398:-1:exon

GDIA_RS18020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS18020
old locus tag: Gdia_3576
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019088716.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid stabilization protein
translation: MAVMTIRNIDDNLKQRLRLRAAVHGRSMEEEARVILRTALSVEVSLSVDAGQTIHQRFARLGGVDLPAVPREAIRNVDFGG
SIO_010081: GDIA_RS18020
subclass of: SO_0000673
so part of: GDIA_RS18020
location: complement(24153..24398)
location: region:24153-24398:-1
so has part: feature:24153-24398:-1:exon

WP_012555445.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24153-24398:-1:exon

GDIA_RS18025
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS18025
old locus tag: Gdia_3577
so part of: sequence
location: complement(24494..25249)
location: region:24494-25249:-1
so has part: feature:24494-25249:-1:exon
subclass of: SO_0000010

position:24494:-1
position: 24494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25249:-1
position: 25249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24494-25249:-1:exon

GDIA_RS18025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS18025
old locus tag: Gdia_3577
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010505343.1
GO function: GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metallophosphoesterase
translation: MARLWVLSDLHLETAPFPDAYDPPRPAFDVLVVAGDIWEGEPEKAVATIARLAEARPSVLVGGNHEAWGMTPARCLDRLKRAAKGVNVTVQDGDAAVIAGVRFIGATLWADGLLSGLHLRPHEATGEGVCRPDGQGPITHGDEIALHAVQRARIASLLDEAPADDLPIVVVTHHAPLVDRVPAALRVHPGADLFASDLSALMTRHRIALWVHGHIHAREDRLHDSGTRIVANPAGPLFTTTGFEDDCVVIV
SIO_010081: GDIA_RS18025
subclass of: SO_0000673
so part of: GDIA_RS18025
location: complement(24494..25249)
location: region:24494-25249:-1
so has part: feature:24494-25249:-1:exon

WP_012555446.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24494-25249:-1:exon

GDIA_RS18030
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS18030
old locus tag: Gdia_3578
so part of: sequence
location: complement(25282..26163)
location: region:25282-26163:-1
so has part: feature:25282-26163:-1:exon
subclass of: SO_0000010

position:25282:-1
position: 25282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26163:-1
position: 26163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25282-26163:-1:exon

GDIA_RS18030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS18030
old locus tag: Gdia_3578
inference: COORDINATES: protein motif:HMM:NF023168.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MNETLISAETVMQAAEALVGRGEKPSVRKVRDELGGGSPNAILPLLNAWKDSQRGRPVEAPKEEPRSEAGDLVSAEMDNAAERMKQGFLAMLTGFVDAERQKGQSVQQAIQAAADQKVALAREAADQQIADIQAQAGAELADARGEAMELAEALAGATAEAEGLTRRLEALQREVDRLTVELTAERQAHQAARAMAERQTGEIDALRQAVSEAQARAQAAEKAQDIAERRASTAATALENAEKSRDAAEARAESRVQAAEARAIRAEERADASVAAIKELAASVTIEREGKKS
SIO_010081: GDIA_RS18030
subclass of: SO_0000673
so part of: GDIA_RS18030
location: complement(25282..26163)
location: region:25282-26163:-1
so has part: feature:25282-26163:-1:exon

WP_012555447.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25282-26163:-1:exon

GDIA_RS18035
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS18035
old locus tag: Gdia_3580
so part of: sequence
location: complement(26331..26585)
location: region:26331-26585:-1
so has part: feature:26331-26585:-1:exon
subclass of: SO_0000010

position:26331:-1
position: 26331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26585:-1
position: 26585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26331-26585:-1:exon

GDIA_RS18035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS18035
old locus tag: Gdia_3580
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007396253.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRTYHHSRKYGRDHRWANRVDRSGYGGSREASEAPNWYSHLHDIRPGRHQDQHIARLIVKGQRDPVEAIFPYTGTRRPHEYYW
SIO_010081: GDIA_RS18035
subclass of: SO_0000673
so part of: GDIA_RS18035
location: complement(26331..26585)
location: region:26331-26585:-1
so has part: feature:26331-26585:-1:exon

WP_012555449.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26331-26585:-1:exon

GDIA_RS18040
type: Gene
subclass of: SO_0000704
RO_0002162: 272568
locus tag: GDIA_RS18040
old locus tag: Gdia_3581
so part of: sequence
location: complement(26681..27208)
location: region:26681-27208:-1
so has part: feature:26681-27208:-1:exon
subclass of: SO_0000010

position:26681:-1
position: 26681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27208:-1
position: 27208
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26681-27208:-1:exon

GDIA_RS18040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 272568
locus tag: GDIA_RS18040
old locus tag: Gdia_3581
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019087448.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKSSLKEEFARLGPVRAVSRVHSGSRARFSLILERKDWPHLNVIAATMALARRGMTMLAAKRAIEALIAESKDQGAGHAAILLPHTDTVEAVIADLGRAGIRAVHNDHRAEVDVAAIRKRLKLSRRQFALWYGLEEETIKGWESGERTPDTAARSYLRAIANQPEAVREAYAHAG
SIO_010081: GDIA_RS18040
subclass of: SO_0000673
so part of: GDIA_RS18040
location: complement(26681..27208)
location: region:26681-27208:-1
so has part: feature:26681-27208:-1:exon

WP_012555450.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26681-27208:-1:exon