Anabaena cylindrica PCC 7122 plasmid pANACY.02, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Nostocaceae; Anabaena.
Finished plasmid 2 of genome of Anabaena cylindrica PCC 7122
Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP003661.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4087082\nSource DNA and Organism available from Cheryl A. Kerfeld\n(CKerfeld@lbl.gov)\n Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov)\nWhole genome sequencing and draft assembly at JGI-PGF\nAnnotation by JGI-ORNL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Anabaena cylindrica PCC 7122\ncollection_date :: 1939\nlat_lon :: 52.202 0.131\ndepth :: Missing\nalt_elev :: Missing\ncountry :: United Kingdom\nenvironment :: Ponds\nnum_replicons :: 7\nref_biomaterial :: PCC 7122, ATCC 27899\nbiotic_relationship :: Free living\ntrophic_level :: Autotroph\nrel_to_oxygen :: Aerobe\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release), VELVET v.\n 1.0.13, Parallel phrap v. 4.24 SPS\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi04305\nType Strain :: No\nFunding Program :: DOE-GEBA 2009\nIsolation Site :: Water, most likely pond, Cambridge, UK, 1939\nMotility :: Motile\nTemperature Range :: Mesophile\nGram Staining :: Gram-\nDiseases :: None\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3 (pre-release), VELVET v.\n 1.0.13, Parallel phrap v. 4.24 SPS\nGenome Coverage :: 30x\nSequencing Technology :: 454/Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/27/2023 03:07:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,179\nCDSs (total) :: 6,096\nGenes (coding) :: 5,917\nCDSs (with protein) :: 5,917\nGenes (RNA) :: 83\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 4\nPseudo Genes (total) :: 179\nCDSs (without protein) :: 179\nPseudo Genes (ambiguous residues) :: 0 of 179\nPseudo Genes (frameshifted) :: 60 of 179\nPseudo Genes (incomplete) :: 124 of 179\nPseudo Genes (internal stop) :: 39 of 179\nPseudo Genes (multiple problems) :: 38 of 179\nCRISPR Arrays :: 13\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_013193274.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016953642.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413169.1
COORDINATES: similar to AA sequence:RefSeq:WP_017320607.1
two-component system sensor histidine kinase RppB
COORDINATES: similar to AA sequence:RefSeq:WP_010993912.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
two-component system response regulator RppA
COORDINATES: similar to AA sequence:RefSeq:WP_017307540.1
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010995341.1
COORDINATES: similar to AA sequence:RefSeq:WP_017655374.1
COORDINATES: similar to AA sequence:RefSeq:WP_017655366.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186439.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186438.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211786.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017307556.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412434.1
COORDINATES: similar to AA sequence:RefSeq:WP_010993932.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741020.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364254.1
COORDINATES: similar to AA sequence:RefSeq:WP_010993934.1
COORDINATES: similar to AA sequence:RefSeq:WP_017656200.1
RpoD/SigA family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_017741053.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307563.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_016877590.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307564.1
COORDINATES: similar to AA sequence:RefSeq:WP_017656196.1
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_017307566.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307567.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186426.1
GO:0016020 - membrane [Evidence IEA]; GO:0046930 - pore complex [Evidence IEA]
GO:0015093 - ferrous iron transmembrane transporter activity [Evidence IEA]
GO:0033212 - iron import into cell [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010993943.1
sigma-70 family RNA polymerase sigma factor SigB
COORDINATES: similar to AA sequence:RefSeq:WP_010993944.1
COORDINATES: similar to AA sequence:RefSeq:WP_017656191.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017656190.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_017656170.1
COORDINATES: similar to AA sequence:RefSeq:WP_017656165.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364270.1
COORDINATES: similar to AA sequence:RefSeq:WP_016871571.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364272.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017656161.1
GO:0016993 - precorrin-8X methylmutase activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017656160.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0015662 - P-type ion transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017656159.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307605.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307607.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016953841.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186419.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186418.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953838.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953837.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016953836.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953835.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015079337.1
COORDINATES: similar to AA sequence:RefSeq:WP_006518768.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953831.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364291.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016953829.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953828.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413342.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953826.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016953824.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016953822.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364298.1
GO:0000166 - nucleotide binding [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016953820.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953819.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953818.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953817.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015186396.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186395.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015186394.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186393.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186392.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611375.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364308.1
COORDINATES: similar to AA sequence:RefSeq:WP_017655731.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019501296.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741017.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_015186429.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015186391.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_015186390.1
COORDINATES: similar to AA sequence:RefSeq:WP_006196493.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364316.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006196492.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016953801.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953800.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364320.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015364324.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953793.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364327.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953791.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186494.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953789.1
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016953787.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953786.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364333.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953784.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364335.1
COORDINATES: similar to AA sequence:RefSeq:WP_017654851.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186487.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
type III-B CRISPR module RAMP protein Cmr1
COORDINATES: similar to AA sequence:RefSeq:WP_017307142.1
COORDINATES: similar to AA sequence:RefSeq:WP_009768126.1
GO:0005575 - cellular_component [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009768127.1
type III-B CRISPR module RAMP protein Cmr4
COORDINATES: similar to AA sequence:RefSeq:WP_017307147.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186482.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953751.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953749.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016953748.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953747.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953746.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364347.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364348.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186473.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953742.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186471.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953740.1
COORDINATES: protein motif:HMM:NF013300.2
GO:0004560 - alpha-L-fucosidase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025643.2
COORDINATES: similar to AA sequence:RefSeq:WP_015115319.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413159.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217593.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217594.1
COORDINATES: similar to AA sequence:RefSeq:WP_017655433.1
COORDINATES: protein motif:HMM:NF040699.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186464.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741182.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186467.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007303603.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016877593.1
COORDINATES: similar to AA sequence:RefSeq:WP_017308363.1
COORDINATES: similar to AA sequence:RefSeq:WP_016863707.1
COORDINATES: similar to AA sequence:RefSeq:WP_016859945.1
COORDINATES: similar to AA sequence:RefSeq:WP_016863702.1
COORDINATES: similar to AA sequence:RefSeq:WP_010993966.1
GO:0046872 - metal ion binding [Evidence IEA]
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016863700.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016863699.1
heavy metal-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015190380.1
FMN-binding negative transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019497206.1
COORDINATES: similar to AA sequence:RefSeq:WP_016863698.1
COORDINATES: similar to AA sequence:RefSeq:WP_015141620.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]