Anabaena cylindrica PCC 7122 plasmid pANACY.03, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Nostocaceae; Anabaena.
Finished plasmid 3 of genome of Anabaena cylindrica PCC 7122
Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP003662.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4087082\nSource DNA and Organism available from Cheryl A. Kerfeld\n(CKerfeld@lbl.gov)\n Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov)\nWhole genome sequencing and draft assembly at JGI-PGF\nAnnotation by JGI-ORNL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Anabaena cylindrica PCC 7122\ncollection_date :: 1939\nlat_lon :: 52.202 0.131\ndepth :: Missing\nalt_elev :: Missing\ncountry :: United Kingdom\nenvironment :: Ponds\nnum_replicons :: 7\nref_biomaterial :: PCC 7122, ATCC 27899\nbiotic_relationship :: Free living\ntrophic_level :: Autotroph\nrel_to_oxygen :: Aerobe\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release), VELVET v.\n 1.0.13, Parallel phrap v. 4.24 SPS\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi04305\nType Strain :: No\nFunding Program :: DOE-GEBA 2009\nIsolation Site :: Water, most likely pond, Cambridge, UK, 1939\nMotility :: Motile\nTemperature Range :: Mesophile\nGram Staining :: Gram-\nDiseases :: None\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3 (pre-release), VELVET v.\n 1.0.13, Parallel phrap v. 4.24 SPS\nGenome Coverage :: 30x\nSequencing Technology :: 454/Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/27/2023 03:07:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,179\nCDSs (total) :: 6,096\nGenes (coding) :: 5,917\nCDSs (with protein) :: 5,917\nGenes (RNA) :: 83\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 4\nPseudo Genes (total) :: 179\nCDSs (without protein) :: 179\nPseudo Genes (ambiguous residues) :: 0 of 179\nPseudo Genes (frameshifted) :: 60 of 179\nPseudo Genes (incomplete) :: 124 of 179\nPseudo Genes (internal stop) :: 39 of 179\nPseudo Genes (multiple problems) :: 38 of 179\nCRISPR Arrays :: 13\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007313307.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015186286.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010999582.1
COORDINATES: similar to AA sequence:RefSeq:WP_015210481.1
COORDINATES: similar to AA sequence:RefSeq:WP_011317714.1
COORDINATES: similar to AA sequence:RefSeq:WP_009342669.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016370.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611448.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF038283.1
viperin family antiviral radical SAM protein
COORDINATES: protein motif:HMM:NF013843.2
COORDINATES: similar to AA sequence:RefSeq:WP_007303735.1
COORDINATES: similar to AA sequence:RefSeq:WP_017305581.1
COORDINATES: similar to AA sequence:RefSeq:WP_015142334.1
MotA/TolQ/ExbB proton channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015116149.1
COORDINATES: similar to AA sequence:RefSeq:WP_015116148.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
type III-B CRISPR module RAMP protein Cmr6
COORDINATES: similar to AA sequence:RefSeq:WP_016874568.1
COORDINATES: similar to AA sequence:RefSeq:WP_009341757.1
type III-B CRISPR module RAMP protein Cmr4
COORDINATES: similar to AA sequence:RefSeq:WP_015116145.1
type III-B CRISPR module-associated Cmr3 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015116144.1
type III-B CRISPR-associated protein Cas10/Cmr2
COORDINATES: similar to AA sequence:RefSeq:WP_002741946.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015116142.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009341764.1
COORDINATES: similar to AA sequence:RefSeq:WP_016874575.1
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015081685.1
COORDINATES: similar to AA sequence:RefSeq:WP_015130019.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611177.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010999907.1
COORDINATES: similar to AA sequence:RefSeq:WP_015140594.1
COORDINATES: similar to AA sequence:RefSeq:WP_015081603.1
COORDINATES: similar to AA sequence:RefSeq:WP_006194604.1
COORDINATES: similar to AA sequence:RefSeq:WP_015213423.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008273819.1
COORDINATES: similar to AA sequence:RefSeq:WP_007354279.1
COORDINATES: protein motif:HMM:NF024180.2
COORDINATES: similar to AA sequence:RefSeq:WP_011613105.1
COORDINATES: similar to AA sequence:RefSeq:WP_011613106.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011613107.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413083.1
formylglycine-generating enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008181669.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_015137267.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033590.1
COORDINATES: protein motif:HMM:NF026057.2
transposase DNA-binding-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012411193.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015214271.1
COORDINATES: similar to AA sequence:RefSeq:WP_006196326.1
COORDINATES: similar to AA sequence:RefSeq:WP_010997645.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948769.1
COORDINATES: protein motif:HMM:NF020835.2
COORDINATES: similar to AA sequence:RefSeq:WP_017741147.1
COORDINATES: similar to AA sequence:RefSeq:WP_017313867.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496513.1
COORDINATES: protein motif:HMM:NF024986.2
COORDINATES: similar to AA sequence:RefSeq:WP_015210473.1
COORDINATES: similar to AA sequence:RefSeq:WP_015116166.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015116177.1
COORDINATES: similar to AA sequence:RefSeq:WP_015116180.1
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: similar to AA sequence:RefSeq:WP_015116184.1
COORDINATES: protein motif:HMM:NF016800.2
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015116186.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307462.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015213537.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_001262004.1
COORDINATES: protein motif:HMM:TIGR00041.1
GO:0004798 - thymidylate kinase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017313614.1
COORDINATES: similar to AA sequence:RefSeq:WP_012407872.1
COORDINATES: similar to AA sequence:RefSeq:WP_011153637.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_015083740.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217786.1
COORDINATES: similar to AA sequence:RefSeq:WP_015083742.1
COORDINATES: similar to AA sequence:RefSeq:WP_015083743.1
COORDINATES: similar to AA sequence:RefSeq:WP_015083744.1
COORDINATES: similar to AA sequence:RefSeq:WP_016952441.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948699.1
COORDINATES: similar to AA sequence:RefSeq:WP_015113515.1
COORDINATES: protein motif:HMM:NF024872.2
COORDINATES: similar to AA sequence:RefSeq:WP_008309067.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
class I SAM-dependent DNA methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_006513043.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018395907.1
COORDINATES: similar to AA sequence:RefSeq:WP_007354812.1
COORDINATES: similar to AA sequence:RefSeq:WP_006521200.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0009035 - type I site-specific deoxyribonuclease activity [Evidence IEA]
type I restriction endonuclease subunit R
COORDINATES: similar to AA sequence:RefSeq:WP_017292317.1
COORDINATES: similar to AA sequence:RefSeq:WP_017292326.1
COORDINATES: similar to AA sequence:RefSeq:WP_015205635.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948717.1
COORDINATES: similar to AA sequence:RefSeq:WP_009787766.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
group II intron maturase-specific domain-containing protein
COORDINATES: protein motif:HMM:NF012862.2
COORDINATES: similar to AA sequence:RefSeq:WP_015081713.1
COORDINATES: similar to AA sequence:RefSeq:WP_010467570.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015081695.1
COORDINATES: similar to AA sequence:RefSeq:WP_011153824.1
COORDINATES: similar to AA sequence:RefSeq:WP_015081693.1
COORDINATES: similar to AA sequence:RefSeq:WP_015210501.1
COORDINATES: similar to AA sequence:RefSeq:WP_015210500.1