Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Nostocaceae; Anabaena.
Finished plasmid 1 of genome of Anabaena cylindrica PCC 7122
Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP003660.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4087082\nSource DNA and Organism available from Cheryl A. Kerfeld\n(CKerfeld@lbl.gov)\n Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov)\nWhole genome sequencing and draft assembly at JGI-PGF\nAnnotation by JGI-ORNL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Anabaena cylindrica PCC 7122\ncollection_date :: 1939\nlat_lon :: 52.202 0.131\ndepth :: Missing\nalt_elev :: Missing\ncountry :: United Kingdom\nenvironment :: Ponds\nnum_replicons :: 7\nref_biomaterial :: PCC 7122, ATCC 27899\nbiotic_relationship :: Free living\ntrophic_level :: Autotroph\nrel_to_oxygen :: Aerobe\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release), VELVET v.\n 1.0.13, Parallel phrap v. 4.24 SPS\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi04305\nType Strain :: No\nFunding Program :: DOE-GEBA 2009\nIsolation Site :: Water, most likely pond, Cambridge, UK, 1939\nMotility :: Motile\nTemperature Range :: Mesophile\nGram Staining :: Gram-\nDiseases :: None\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3 (pre-release), VELVET v.\n 1.0.13, Parallel phrap v. 4.24 SPS\nGenome Coverage :: 30x\nSequencing Technology :: 454/Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/27/2023 03:07:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,179\nCDSs (total) :: 6,096\nGenes (coding) :: 5,917\nCDSs (with protein) :: 5,917\nGenes (RNA) :: 83\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 4\nPseudo Genes (total) :: 179\nCDSs (without protein) :: 179\nPseudo Genes (ambiguous residues) :: 0 of 179\nPseudo Genes (frameshifted) :: 60 of 179\nPseudo Genes (incomplete) :: 124 of 179\nPseudo Genes (internal stop) :: 39 of 179\nPseudo Genes (multiple problems) :: 38 of 179\nCRISPR Arrays :: 13\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_016948744.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016948745.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948746.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948747.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948751.1
COORDINATES: similar to AA sequence:RefSeq:WP_015081601.1
COORDINATES: similar to AA sequence:RefSeq:WP_015201537.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016877667.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_016948752.1
COORDINATES: similar to AA sequence:RefSeq:WP_016878843.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_015213514.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_016948755.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016948756.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186147.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186146.1
phospholipase D-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015213411.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015213412.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211013.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016948764.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948768.1
COORDINATES: similar to AA sequence:RefSeq:WP_015122476.1
GO:0016829 - lyase activity [Evidence IEA]
acetoacetate decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015127475.1
COORDINATES: similar to AA sequence:RefSeq:WP_015216193.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03985.1
TIGR03985 family CRISPR-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_016870768.1
COORDINATES: protein motif:HMM:NF020571.2
COORDINATES: similar to AA sequence:RefSeq:WP_016870770.1
COORDINATES: similar to AA sequence:RefSeq:WP_009455315.1
COORDINATES: similar to AA sequence:RefSeq:WP_009455314.1
type III-B CRISPR module-associated Cmr3 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009455313.1
RAMP superfamily CRISPR-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_016870772.1
COORDINATES: similar to AA sequence:RefSeq:WP_009455311.1
TIGR03986 family CRISPR-associated RAMP protein
COORDINATES: protein motif:HMM:NF016724.2
COORDINATES: similar to AA sequence:RefSeq:WP_020479980.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010993984.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307700.1
COORDINATES: similar to AA sequence:RefSeq:WP_017747903.1
GO:0003674 - molecular_function [Evidence IEA]
DevR family CRISPR-associated autoregulator
COORDINATES: similar to AA sequence:RefSeq:WP_006508681.1
COORDINATES: similar to AA sequence:RefSeq:WP_012597924.1
CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6
COORDINATES: similar to AA sequence:RefSeq:WP_015186250.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011153685.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
type I-D CRISPR-associated endonuclease Cas1d
COORDINATES: similar to AA sequence:RefSeq:WP_017750008.1
COORDINATES: similar to AA sequence:RefSeq:WP_015955087.1
COORDINATES: protein motif:HMM:NF015077.2
GO:0010038 - response to metal ion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611687.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010994062.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364359.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364360.1
COORDINATES: protein motif:HMM:NF024835.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016953752.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948784.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611097.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948785.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948786.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948787.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948788.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948789.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948791.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948792.1
COORDINATES: similar to AA sequence:RefSeq:WP_013705620.1
COORDINATES: similar to AA sequence:RefSeq:WP_017288918.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496574.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948797.1
COORDINATES: similar to AA sequence:RefSeq:WP_017655423.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948801.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217612.1
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016948809.1
GO:0016901 - oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor [Evidence IEA]; GO:0070968 - pyrroloquinoline quinone binding [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011319972.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211553.1
COORDINATES: similar to AA sequence:RefSeq:WP_017314085.1
COORDINATES: similar to AA sequence:RefSeq:WP_015212004.1
COORDINATES: similar to AA sequence:RefSeq:WP_017288377.1
hybrid sensor histidine kinase/response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016948823.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016948824.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217620.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948826.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013625.2
GO:0042834 - peptidoglycan binding [Evidence IEA]
peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012407678.1
COORDINATES: similar to AA sequence:RefSeq:WP_015080764.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002739714.1
COORDINATES: similar to AA sequence:RefSeq:WP_002745983.1
COORDINATES: similar to AA sequence:RefSeq:WP_015184305.1
GO:0003729 - mRNA binding [Evidence IEA]
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_002783541.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_015080028.1
GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
putative toxin-antitoxin system toxin component, PIN family
COORDINATES: similar to AA sequence:RefSeq:WP_006669832.1
COORDINATES: similar to AA sequence:RefSeq:WP_006198219.1
COORDINATES: similar to AA sequence:RefSeq:WP_012626905.1
COORDINATES: similar to AA sequence:RefSeq:WP_015207484.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948833.1
GO:0004370 - glycerol kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013193283.1
GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013193282.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948834.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016948835.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_015328646.1
GO:0000166 - nucleotide binding [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015328648.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948728.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948729.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948730.1
COORDINATES: similar to AA sequence:RefSeq:WP_009343016.1
COORDINATES: similar to AA sequence:RefSeq:WP_009343017.1
COORDINATES: similar to AA sequence:RefSeq:WP_017287366.1
COORDINATES: similar to AA sequence:RefSeq:WP_015127598.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211048.1
COORDINATES: similar to AA sequence:RefSeq:WP_015180267.1
GO:0004519 - endonuclease activity [Evidence IEA]
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015083201.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012264372.1
COORDINATES: similar to AA sequence:RefSeq:WP_015198745.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948733.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017653111.1
COORDINATES: similar to AA sequence:RefSeq:WP_017653110.1
COORDINATES: similar to AA sequence:RefSeq:WP_017653107.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012413304.1
COORDINATES: similar to AA sequence:RefSeq:WP_017653105.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948774.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948773.1
COORDINATES: similar to AA sequence:RefSeq:WP_009629512.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016948771.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186467.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016869290.1
COORDINATES: similar to AA sequence:RefSeq:WP_017743768.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741215.1
COORDINATES: similar to AA sequence:RefSeq:WP_015196022.1
COORDINATES: similar to AA sequence:RefSeq:WP_015153043.1
COORDINATES: similar to AA sequence:RefSeq:WP_015113650.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741223.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186221.1
COORDINATES: similar to AA sequence:RefSeq:WP_015196026.1
COORDINATES: similar to AA sequence:RefSeq:WP_009628459.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_006618685.1
type III-B CRISPR-associated protein Cas10/Cmr2
COORDINATES: similar to AA sequence:RefSeq:WP_006669912.1
COORDINATES: similar to AA sequence:RefSeq:WP_015221262.1
COORDINATES: similar to AA sequence:RefSeq:WP_017303837.1
COORDINATES: similar to AA sequence:RefSeq:WP_009546847.1
COORDINATES: similar to AA sequence:RefSeq:WP_017749288.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211705.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334495.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217864.1
COORDINATES: similar to AA sequence:RefSeq:WP_015081546.1
reverse transcriptase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015078275.1
COORDINATES: similar to AA sequence:RefSeq:WP_015136521.1
COORDINATES: similar to AA sequence:RefSeq:WP_015196011.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012413313.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948734.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948740.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948741.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007355627.1