Candidatus Rhabdochlamydia oedothoracis isolate W744xW776 plasmid unnamed, complete sequence.
Bacteria; Chlamydiota; Chlamydiia; Parachlamydiales; Rhabdochlamydiaceae; Candidatus Rhabdochlamydia.
Ecology and evolution of chlamydial symbionts of arthropods
Submitted (19-MAY-2021) Division of Microbial Ecology, Centre for Microbiology and Environmental Systems Science, Althanstrasse 14, Vienna, Vienna 1090, Austria
REFSEQ INFORMATION: The reference sequence is identical to\nCP075588.1.\nBacteria and source DNA available from Frederik Hendrickx, Royal\nBelgian Institute of Natural Sciences, Brussels, Belgium.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 21-MAY-2020\nAssembly Method :: Unicycler v. v0.4.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 152.0x\nSequencing Technology :: PacBio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/01/2023 04:30:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,105\nCDSs (total) :: 2,059\nGenes (coding) :: 1,785\nCDSs (with protein) :: 1,785\nGenes (RNA) :: 46\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 37\nncRNAs :: 3\nPseudo Genes (total) :: 274\nCDSs (without protein) :: 274\nPseudo Genes (ambiguous residues) :: 0 of 274\nPseudo Genes (frameshifted) :: 101 of 274\nPseudo Genes (incomplete) :: 236 of 274\nPseudo Genes (internal stop) :: 78 of 274\nPseudo Genes (multiple problems) :: 119 of 274\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Offspring from female W744 and male W776
COORDINATES: protein motif:HMM:NF017003.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
Lpg1974 family pore-forming outer membrane protein
COORDINATES: protein motif:HMM:NF024872.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF025304.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076612132.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612040.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033545.0
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF033563.0
COORDINATES: protein motif:HMM:NF013752.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_007916848.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024139.2
COORDINATES: similar to AA sequence:RefSeq:WP_012222646.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF020943.2
COORDINATES: protein motif:HMM:NF013842.2
COORDINATES: similar to AA sequence:RefSeq:WP_013944591.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_035718769.1
COORDINATES: protein motif:HMM:NF024794.2
COORDINATES: protein motif:HMM:NF017474.2