[Ochrobactrum] quorumnocens strain A44 plasmid unnamed2, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group; Brucella.
Phylogenetic study on the rhizospheric bacterium Ochrobactrum sp. A44
Submitted (19-JUL-2017) Department of Biotechnology, Intercollegiate Faculty of Biotechnology UG and MUG, Abrahama 58, Gdansk 80-307, Poland
REFSEQ INFORMATION: The reference sequence is identical to\nCP022602.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: ABySS v. 1.5.1\nGenome Coverage :: 147.12x\nSequencing Technology :: Illumina; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 02:40:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,334\nCDSs (total) :: 5,265\nGenes (coding) :: 5,115\nCDSs (with protein) :: 5,115\nGenes (RNA) :: 69\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 4\nPseudo Genes (total) :: 150\nCDSs (without protein) :: 150\nPseudo Genes (ambiguous residues) :: 0 of 150\nPseudo Genes (frameshifted) :: 68 of 150\nPseudo Genes (incomplete) :: 101 of 150\nPseudo Genes (internal stop) :: 37 of 150\nPseudo Genes (multiple problems) :: 49 of 150\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Ochrobactrum quorumnocens
COORDINATES: similar to AA sequence:RefSeq:WP_010661709.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004109775.1
COORDINATES: similar to AA sequence:RefSeq:WP_006469201.1
COORDINATES: similar to AA sequence:RefSeq:WP_016921310.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018066164.1
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 - transcription antitermination factor activity, RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010661716.1
COORDINATES: protein motif:HMM:NF024736.2
COORDINATES: protein motif:HMM:NF033580.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF039802.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006469241.1
COORDINATES: similar to AA sequence:RefSeq:WP_006195522.1
COORDINATES: protein motif:HMM:NF025569.2
COORDINATES: protein motif:HMM:NF016159.2
COORDINATES: protein motif:HMM:NF016488.2
COORDINATES: similar to AA sequence:RefSeq:WP_009820057.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011970376.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_076612405.1
COORDINATES: similar to AA sequence:RefSeq:WP_006699325.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.