[Ochrobactrum] quorumnocens strain A44 plasmid unnamed2, complete sequence.
type: Entry
definition: [Ochrobactrum] quorumnocens strain A44 plasmid unnamed2, complete sequence.
sequence version: NZ_CP022602.1
sequence date: 2023-04-28
sequence: sequence
division: CON
label: NZ_CP022602.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07259827
keyword: RefSeq
source: [Ochrobactrum] quorumnocens
organism: [Ochrobactrum] quorumnocens
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group; Brucella.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP022602.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: ABySS v. 1.5.1\nGenome Coverage :: 147.12x\nSequencing Technology :: Illumina; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 02:40:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,334\nCDSs (total) :: 5,265\nGenes (coding) :: 5,115\nCDSs (with protein) :: 5,115\nGenes (RNA) :: 69\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 4\nPseudo Genes (total) :: 150\nCDSs (without protein) :: 150\nPseudo Genes (ambiguous residues) :: 0 of 150\nPseudo Genes (frameshifted) :: 68 of 150\nPseudo Genes (incomplete) :: 101 of 150\nPseudo Genes (internal stop) :: 37 of 150\nPseudo Genes (multiple problems) :: 49 of 150\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 19701
topology: circular
so has quality: SO_0000988
location: 1..19701
location: region:1-19701:1
RO_0002162: 271865

NZ_CP022602
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07259827
type: BioSample
SIO_000068: biosample

1
title: Phylogenetic study on the rhizospheric bacterium Ochrobactrum sp. A44
author: Krzyzanowska, D.M.
author: Ossowicki, A.
author: Rajewska, M.
author: Maciag, T.
author: Kaczynski, Z.
author: Czerwicka, M.
author: Jafra, S.
journal: Unpublished

2
title: Direct Submission
author: Krzyzanowska, D.M.
author: Ossowicki, A.
author: Rajewska, M.
author: Maciag, T.
author: Kaczynski, Z.
author: Czerwicka, M.
author: Jafra, S.
journal: Submitted (19-JUL-2017) Department of Biotechnology, Intercollegiate Faculty of Biotechnology UG and MUG, Abrahama 58, Gdansk 80-307, Poland

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19701:1
position: 19701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19701:1:source
so part of: sequence
organism: [Ochrobactrum] quorumnocens
mol type: genomic DNA
strain: A44
isolation source: rhizosphere of potato
type material: type strain of Ochrobactrum quorumnocens
plasmid: unnamed2
country: Netherlands: Bennekom area
collection date: 2002

271865
type: Taxonomy
SIO_000068: taxonomy

CES85_RS00005
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
locus tag: CES85_RS00005
old locus tag: CES85_5838
so part of: sequence
location: complement(442..744)
location: region:442-744:-1
so has part: feature:442-744:-1:exon
subclass of: SO_0000010

position:442:-1
position: 442
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:744:-1
position: 744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:442-744:-1:exon

CES85_RS00005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
locus tag: CES85_RS00005
old locus tag: CES85_5838
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010661709.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF982 domain-containing protein
translation: MNDRLFDRPVFVKDGPYLVREITSIGDALDFLYEWPERDRDLIYETAWKACCDSHDGVKPVEAAENAIRGFAKKRGILEEPEVPIPWMSNPKTGGGRVQV
SIO_010081: CES85_RS00005
subclass of: SO_0000673
so part of: CES85_RS00005
location: complement(442..744)
location: region:442-744:-1
so has part: feature:442-744:-1:exon

WP_095444054.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:442-744:-1:exon

CES85_RS00015
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
locus tag: CES85_RS00015
old locus tag: CES85_5841
so part of: sequence
location: 1813..1998
location: region:1813-1998:1
so has part: feature:1813-1998:1:exon
subclass of: SO_0000010

position:1813:1
position: 1813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1998:1
position: 1998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1813-1998:1:exon

CES85_RS00015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
locus tag: CES85_RS00015
old locus tag: CES85_5841
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004109775.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKSAVLMTALLTLGLLSGCATSGNYCDVARAIYASHDDTSETKRQILAENEKIEKLCGVRP
SIO_010081: CES85_RS00015
subclass of: SO_0000673
so part of: CES85_RS00015
location: 1813..1998
location: region:1813-1998:1
so has part: feature:1813-1998:1:exon

WP_095444055.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1813-1998:1:exon

CES85_RS00020
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
locus tag: CES85_RS00020
old locus tag: CES85_5842
so part of: sequence
location: 2036..2371
location: region:2036-2371:1
so has part: feature:2036-2371:1:exon
subclass of: SO_0000010

position:2036:1
position: 2036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2371:1
position: 2371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2036-2371:1:exon

CES85_RS00020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
locus tag: CES85_RS00020
old locus tag: CES85_5842
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006469201.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTGTEIMGAVGFIVMLFGFLFGLWKYVDSKINAARNETAAKADAATALAALTRQELSDYKLRAAETFATKAGMQEQTSQIMRAIESVANRIDGLTERMDRVFEQKTTRARS
SIO_010081: CES85_RS00020
subclass of: SO_0000673
so part of: CES85_RS00020
location: 2036..2371
location: region:2036-2371:1
so has part: feature:2036-2371:1:exon

WP_095444056.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2036-2371:1:exon

CES85_RS00025
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
gene: rpsU
locus tag: CES85_RS00025
old locus tag: CES85_5843
so part of: sequence
location: complement(2412..2693)
location: region:2412-2693:-1
so has part: feature:2412-2693:-1:exon
subclass of: SO_0000010

position:2412:-1
position: 2412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2693:-1
position: 2693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2412-2693:-1:exon

CES85_RS00025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
gene: rpsU
locus tag: CES85_RS00025
old locus tag: CES85_5843
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016921310.1
GO component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 30S ribosomal protein S21
translation: MQVLVRDNNIDQALRVLKKKLQREGVFREMKARRAFEKPSEKRIREKEAAIGRARKEAKKKAQREGLLPKPKRKPFSGPNRSPAHGVNALTTA
SIO_010081: CES85_RS00025
subclass of: SO_0000673
so part of: CES85_RS00025
location: complement(2412..2693)
location: region:2412-2693:-1
so has part: feature:2412-2693:-1:exon

WP_095444057.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2412-2693:-1:exon

CES85_RS00035
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
locus tag: CES85_RS00035
old locus tag: CES85_5845
so part of: sequence
location: complement(3250..3459)
location: region:3250-3459:-1
so has part: feature:3250-3459:-1:exon
subclass of: SO_0000010

position:3250:-1
position: 3250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3459:-1
position: 3459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3250-3459:-1:exon

CES85_RS00035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
locus tag: CES85_RS00035
old locus tag: CES85_5845
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018066164.1
GO component: GO:0005829 - cytosol [Evidence IEA]
GO function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 - transcription antitermination factor activity, RNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cold-shock protein
translation: MTTGTVKWFNSTKGFGFIQPDNGGADAFVHISAVERAGMREIVEGQKIGYDLERDMKSGKMSACNLQAA
SIO_010081: CES85_RS00035
subclass of: SO_0000673
so part of: CES85_RS00035
location: complement(3250..3459)
location: region:3250-3459:-1
so has part: feature:3250-3459:-1:exon

WP_095444059.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3250-3459:-1:exon

CES85_RS00040
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
locus tag: CES85_RS00040
so part of: sequence
location: complement(3768..3992)
location: region:3768-3992:-1
so has part: feature:3768-3992:-1:exon
subclass of: SO_0000010

position:3768:-1
position: 3768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3992:-1
position: 3992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3768-3992:-1:exon

CES85_RS00040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
locus tag: CES85_RS00040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010661716.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSSSIHLVDFHISNRILNRMMTKAGYVTLRMKPLSGPLFHQSKLVLQNFMTGVMRDHRADVAPLPESTSAYGAP
SIO_010081: CES85_RS00040
subclass of: SO_0000673
so part of: CES85_RS00040
location: complement(3768..3992)
location: region:3768-3992:-1
so has part: feature:3768-3992:-1:exon

WP_095444060.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3768-3992:-1:exon

CES85_RS00045
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
locus tag: CES85_RS00045
old locus tag: CES85_5848
so part of: sequence
location: 4873..5262
location: region:4873-5262:1
so has part: feature:4873-5262:1:exon
subclass of: SO_0000010

position:4873:1
position: 4873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5262:1
position: 5262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4873-5262:1:exon

CES85_RS00045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
locus tag: CES85_RS00045
old locus tag: CES85_5848
inference: COORDINATES: protein motif:HMM:NF024736.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MCTKMTESDYELALEVFRACLPAVGAKAKNDRLFLEALHYFTLHNISWRALPERYGNWNSIWKRFDRLGKAGIFEDYFSILAGLDESAHLIAMFDSTVIRAHVSAAGAKGGRKAKRSGIRVEGLEPKSI
SIO_010081: CES85_RS00045
subclass of: SO_0000673
so part of: CES85_RS00045
location: 4873..5262
location: region:4873-5262:1
so has part: feature:4873-5262:1:exon

WP_095444061.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4873-5262:1:exon

CES85_RS00050
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
locus tag: CES85_RS00050
old locus tag: CES85_5849
so part of: sequence
location: 5253..5654
location: region:5253-5654:1
so has part: feature:5253-5654:1:exon
subclass of: SO_0000010

position:5253:1
position: 5253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5654:1
position: 5654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5253-5654:1:exon

CES85_RS00050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
locus tag: CES85_RS00050
old locus tag: CES85_5849
inference: COORDINATES: protein motif:HMM:NF033580.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5 family transposase
translation: MHLKTDRNGQPLGFELTGGEASDSKQFKSLMETGPQITHRAIIADKGYDSDDNRKTARMAGAIPVIPYRSNRRNIPKHFAVALYRGRARIEQMMGKLKRFKRVALRCEKTARNFRSIVAIAAVFILIKSVHTA
SIO_010081: CES85_RS00050
subclass of: SO_0000673
so part of: CES85_RS00050
location: 5253..5654
location: region:5253-5654:1
so has part: feature:5253-5654:1:exon

WP_095444062.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5253-5654:1:exon

CES85_RS27595
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
locus tag: CES85_RS27595
old locus tag: CES85_5850
so part of: sequence
location: 6008..6370
location: region:6008-6370:1
so has part: feature:6008-6370:1:exon
subclass of: SO_0000010

position:6008:1
position: 6008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6370:1
position: 6370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6008-6370:1:exon

CES85_RS27595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
locus tag: CES85_RS27595
old locus tag: CES85_5850
inference: COORDINATES: protein motif:HMM:NF039802.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6511 domain-containing protein
translation: MRLSKSKSKDSSTVTINALLKLLRCADQQQHAYHCRDGRYLGWLCKECADIAEHIRSRRRLDPYELRALDTGVEAVGAFLGSIGKTDLADCDELEARMLVKAAWGGCGRGMREALKDAPF
SIO_010081: CES85_RS27595
subclass of: SO_0000673
so part of: CES85_RS27595
location: 6008..6370
location: region:6008-6370:1
so has part: feature:6008-6370:1:exon

WP_244923146.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6008-6370:1:exon

CES85_RS00060
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
locus tag: CES85_RS00060
so part of: sequence
location: complement(6410..6619)
location: region:6410-6619:-1
so has part: feature:6410-6619:-1:exon
subclass of: SO_0000010

position:6410:-1
position: 6410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6619:-1
position: 6619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6410-6619:-1:exon

CES85_RS00060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
locus tag: CES85_RS00060
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRSTLTGGRYIGGRYKTSNGVNDTWSVFDQKAQRPVEMGARQAVGLNYRDAKELSDLLNSLEAKRQAS
SIO_010081: CES85_RS00060
subclass of: SO_0000673
so part of: CES85_RS00060
location: complement(6410..6619)
location: region:6410-6619:-1
so has part: feature:6410-6619:-1:exon

WP_095444063.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6410-6619:-1:exon

CES85_RS00065
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
locus tag: CES85_RS00065
old locus tag: CES85_5852
so part of: sequence
location: 6667..7566
location: region:6667-7566:1
so has part: feature:6667-7566:1:exon
subclass of: SO_0000010

position:6667:1
position: 6667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7566:1
position: 7566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6667-7566:1:exon

CES85_RS00065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
locus tag: CES85_RS00065
old locus tag: CES85_5852
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006469241.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: bifunctional DNA primase/polymerase
translation: MVNSAQPLVNDAAPMLDVALSYQAQSWPVFPCRHRDEEIIDPQTGEIEILATKTPLTSNGFRGATLNERIVREYWRRNPSAMIGVPTGAPIGAWVLDIDPKHGGDETLAALEAQHGALPATLTAETTSGGRHYFFRHRQGVRNRGALGSGVDVRGDGGYVIAAGSVPDNLAPLSHRVDWRKLESVALGNGQGLTKPQDHTPVVISWVWPTSEEVAETITEDEREAIRGVVNGGMYKPAPQAKDWVGRAVAYALQLDIDEDTDKKRVSMITKALFAEGFLMKVEDRDPVQRRATTFVRAM
SIO_010081: CES85_RS00065
subclass of: SO_0000673
so part of: CES85_RS00065
location: 6667..7566
location: region:6667-7566:1
so has part: feature:6667-7566:1:exon

WP_244923147.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6667-7566:1:exon

CES85_RS00070
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
locus tag: CES85_RS00070
old locus tag: CES85_5853
so part of: sequence
location: 7747..8445
location: region:7747-8445:1
so has part: feature:7747-8445:1:exon
subclass of: SO_0000010

position:7747:1
position: 7747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8445:1
position: 8445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7747-8445:1:exon

CES85_RS00070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
locus tag: CES85_RS00070
old locus tag: CES85_5853
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006195522.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: porin family protein
translation: MNIKTILLASTVAFAGMSGANAADAVVYEEPAPVIVAPVFSWTGGYLGGQIGYGWGKSRFSDDFVVNLKPDGFLGGLYAGYNFDMGNNFVLGVDGDVTYNNLKDSYSALAPDGLTDSIESKLRWSGAVRARAGVAMDRFMPYIAGGVAFGSVKNTLSISDGINELSASQSKTHTGWTAGAGIDYAATDNVIVRLEYRYTDYGHKDYDFDLGTGSARNKFKTNDVRLGVAYKF
SIO_010081: CES85_RS00070
subclass of: SO_0000673
so part of: CES85_RS00070
location: 7747..8445
location: region:7747-8445:1
so has part: feature:7747-8445:1:exon

WP_095444064.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7747-8445:1:exon

CES85_RS00075
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
locus tag: CES85_RS00075
old locus tag: CES85_5855
so part of: sequence
location: 8805..10130
location: region:8805-10130:1
so has part: feature:8805-10130:1:exon
subclass of: SO_0000010

position:8805:1
position: 8805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10130:1
position: 10130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8805-10130:1:exon

CES85_RS00075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
locus tag: CES85_RS00075
old locus tag: CES85_5855
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNCSATNRTPTEAYPLGPDENKASRATADPYILQRKAENEAAAEYERNALRKAQLSKDQFALENKIAEVRKRSESENAKLTAEQIKRIAEAELAGDKSRTSEGKKPKKEKKTPDDKFDGDLQSITDRTSALIAETEAQRQINPLIDDYGFAVERARTEQELLNAAQKAGVEVTPALRAEIKATADQWALATVEANQLSEAQAEIQQKSEEWRSTEVGAFKGLVSDLASGKNAAEAFADALQKVLDKLLDILAQSLFDGLFGKTGSFLGDALGGLLGRKDGGPIPGYASGGRVRGPGGPRDDKVLMWGSNGEFMMNANATQKFLPILEAMNAGRLPEFSNGGKIGIPAPMSPRASIPVPVIPSAAQLVAGSSNTDNSRTDNSVNSSPVINVNVSGATGNAEIASMVQQGVAQGIKTWRGSVDFTAAVAGGIKQGNRRGMLNR
SIO_010081: CES85_RS00075
subclass of: SO_0000673
so part of: CES85_RS00075
location: 8805..10130
location: region:8805-10130:1
so has part: feature:8805-10130:1:exon

WP_095444065.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8805-10130:1:exon

CES85_RS00080
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
locus tag: CES85_RS00080
old locus tag: CES85_5856
so part of: sequence
location: 10172..10393
location: region:10172-10393:1
so has part: feature:10172-10393:1:exon
subclass of: SO_0000010

position:10172:1
position: 10172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10393:1
position: 10393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10172-10393:1:exon

CES85_RS00080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
locus tag: CES85_RS00080
old locus tag: CES85_5856
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKLFFVAREPLNWSDGDLRIVDPEAVAYSNTLDAANEAERLARIYPGESFIVFEGIAKHSFKCEPVPVVRTRL
SIO_010081: CES85_RS00080
subclass of: SO_0000673
so part of: CES85_RS00080
location: 10172..10393
location: region:10172-10393:1
so has part: feature:10172-10393:1:exon

WP_095444066.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10172-10393:1:exon

CES85_RS00085
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
locus tag: CES85_RS00085
so part of: sequence
location: complement(10574..10852)
location: region:10574-10852:-1
so has part: feature:10574-10852:-1:exon
subclass of: SO_0000010

position:10574:-1
position: 10574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10852:-1
position: 10852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10574-10852:-1:exon

CES85_RS00085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
locus tag: CES85_RS00085
inference: COORDINATES: protein motif:HMM:NF025569.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CPCC family cysteine-rich protein
translation: MPFRNIIEPHVEGQAYRCPCCHFATLSERGGYEICPVCFWEDDGQDDHDADLVRGGPNGPLSQVQARLNFAESGACNFHHRKNVRPPTEAER
SIO_010081: CES85_RS00085
subclass of: SO_0000673
so part of: CES85_RS00085
location: complement(10574..10852)
location: region:10574-10852:-1
so has part: feature:10574-10852:-1:exon

WP_095444067.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10574-10852:-1:exon

CES85_RS00090
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
locus tag: CES85_RS00090
old locus tag: CES85_5859
so part of: sequence
location: 10939..11550
location: region:10939-11550:1
so has part: feature:10939-11550:1:exon
subclass of: SO_0000010

position:10939:1
position: 10939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11550:1
position: 11550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10939-11550:1:exon

CES85_RS00090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
locus tag: CES85_RS00090
old locus tag: CES85_5859
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIELPESIGFQPSYPQLTIPTSQTKYGGRTISTVEYADSNRTVDMETVPLTAGQAVQLQSFIAAARGGAETIIYRPTHICIPQAYWGDADNPHIGGTATRGAVTGGYTVQLTNVVPGLILKPGDMFSLQSGDYRQMLQVVIGGVAASTTLTVKVDQPVSSYAGAGATVRYKRPEMNTRLVKDSFQMASGHFPTASFQLIEVPR
SIO_010081: CES85_RS00090
subclass of: SO_0000673
so part of: CES85_RS00090
location: 10939..11550
location: region:10939-11550:1
so has part: feature:10939-11550:1:exon

WP_095444068.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10939-11550:1:exon

CES85_RS00095
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
locus tag: CES85_RS00095
old locus tag: CES85_5860
so part of: sequence
location: 11639..12727
location: region:11639-12727:1
so has part: feature:11639-12727:1:exon
subclass of: SO_0000010

position:11639:1
position: 11639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12727:1
position: 12727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11639-12727:1:exon

CES85_RS00095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
locus tag: CES85_RS00095
old locus tag: CES85_5860
inference: COORDINATES: protein motif:HMM:NF016159.2
GO component: GO:0009295 - nucleoid [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: nucleoid-associated protein
translation: MILENLRVNRVIMHEIFKRNNDRELVTPSYSDSIEILDAEAKATFQMRVTDALSAQSKSMEMRITELDDLSVVASAEKIIFEVGATGDQKFIDVSKSLAFKLAKAQTSRRYLGGVVIVFDGKFGVPERHFVGVIKAETQSGFRRLRDKEKILTQFLNDIFLTPAQRLYKIGFLIPGKQSDGRSGWSCFIFDSNITSNQRESAAQYFYESFMGCTFPSNGAYETSKFFDLTKKFVRNSDLEPEKKRDINDALFTFVKVEQSPTFTSQEFAEKYLPLEVRDGFSSFLQSNKFPERAVVRDVSDMGTRLKRRKFKFGSDAEFSASPEALRNKKVEIKTVEAKKLGGDDDEPWTQIIVRQQMTDQL
SIO_010081: CES85_RS00095
subclass of: SO_0000673
so part of: CES85_RS00095
location: 11639..12727
location: region:11639-12727:1
so has part: feature:11639-12727:1:exon

WP_095444069.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11639-12727:1:exon

CES85_RS00100
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
locus tag: CES85_RS00100
old locus tag: CES85_5861
so part of: sequence
location: 12724..13722
location: region:12724-13722:1
so has part: feature:12724-13722:1:exon
subclass of: SO_0000010

position:12724:1
position: 12724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13722:1
position: 13722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12724-13722:1:exon

CES85_RS00100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
locus tag: CES85_RS00100
old locus tag: CES85_5861
inference: COORDINATES: protein motif:HMM:NF016488.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RelA/SpoT domain-containing protein
translation: MTSEEEFLRKWKEEEPLYIAWGRFIYSKMTSLIDSKINPRNVDAFLRLPVKPRVKEADSLLQKAFYRQKNYIDPYSEIEDKIGLRFVVLLARDVRVIEDAILEGGCYWNYEKARDYEDERAAKPEEFGYQSVHYVLKSKFGFRDESTDIPEGLPCEVQVRTLLQHAYSELTHDTIYKPSIKATPQMKRAAAKSMALIEATDDYFTEVSRLIDNVVESSSRIEETLFSVYKDKVSDEGVSQITPLNSLITDRYGKLIKEGFSSELEVFFKEKPYIFDRIKERRESAQLYRVPAIILVYYCVAKFPTAAKYDTPLDDSELAMIYSDLGLSLAIN
SIO_010081: CES85_RS00100
subclass of: SO_0000673
so part of: CES85_RS00100
location: 12724..13722
location: region:12724-13722:1
so has part: feature:12724-13722:1:exon

WP_095444070.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12724-13722:1:exon

CES85_RS00110
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
locus tag: CES85_RS00110
so part of: sequence
location: 14061..14447
location: region:14061-14447:1
so has part: feature:14061-14447:1:exon
subclass of: SO_0000010

position:14061:1
position: 14061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14447:1
position: 14447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14061-14447:1:exon

CES85_RS00110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
locus tag: CES85_RS00110
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009820057.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: METTLEFLTTRKPRREVHRHWPDEVKAKIVSESLRPGTKVNEVAQRYGLRANSLSTWRTMARQGKLILPAPEDAVEFAAVIVDPPVSEPPPKTVGRPEIVFGSVIIRLEEGASAARIAAIVRALAAAT
SIO_010081: CES85_RS00110
subclass of: SO_0000673
so part of: CES85_RS00110
location: 14061..14447
location: region:14061-14447:1
so has part: feature:14061-14447:1:exon

WP_244923145.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14061-14447:1:exon

CES85_RS00115
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
gene: tnpB
locus tag: CES85_RS00115
old locus tag: CES85_5863
so part of: sequence
location: 14444..14797
location: region:14444-14797:1
so has part: feature:14444-14797:1:exon
subclass of: SO_0000010

position:14444:1
position: 14444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14797:1
position: 14797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14444-14797:1:exon

CES85_RS00115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
gene: tnpB
locus tag: CES85_RS00115
old locus tag: CES85_5863
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011970376.1
note: TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS66 family insertion sequence element accessory protein TnpB
translation: MIFPSNRVRIMVATKPVDFRKGHDGLAALVKNELHKDPFTGTVFVFRSRKADRLKLIYWDGSGIVLAYKRLEEHTFTWPGIKDGLMTLSHPQFEALFAGLDWRRVHAVQTRTPEAIE
SIO_010081: CES85_RS00115
subclass of: SO_0000673
so part of: CES85_RS00115
location: 14444..14797
location: region:14444-14797:1
so has part: feature:14444-14797:1:exon

WP_095444071.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14444-14797:1:exon

CES85_RS00120
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
locus tag: CES85_RS00120
old locus tag: CES85_5864
so part of: sequence
location: 14866..16431
location: region:14866-16431:1
so has part: feature:14866-16431:1:exon
subclass of: SO_0000010

position:14866:1
position: 14866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16431:1
position: 16431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14866-16431:1:exon

CES85_RS00120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
locus tag: CES85_RS00120
old locus tag: CES85_5864
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076612405.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS66 family transposase
translation: MLDAADLPDDIAALKAMLLAAQAREAGKDAQIARKDERIERLEKLVAAFKQAAFGRKSEKTDADQFDLALEDLETAMAAIHAEDEADVPAGNRIAKPRAINRGSLPKHLPRIEEVIEPESLICACGGCLHCIGEDVSERLDVVPAQFRVIVTRRPKYACRACTDGVVQAPAPARLIQAGLPTEATVAHVLVSKYADHLPLYRQAQIMSRQGIDLDRSTLADWVGRAAFELRPVFDALIADLKRSTKLFMDETRAPVLDPGSRKTKTGYFWALARDDRPWGGGAPPGVAFTYAPGRGGIHAERILQGFSGILQVDGYAGYNRLIGPDRIGLDIRLAYCWAHARRKLVEIARNGSAPIAEDGVKRIGELYRIEAELRGLDPEARLAGRQERSAPLVADIQTWLLHHRARVAGKSPLGEALAYIAKYWDGLKLFLTDGRIEIDNNTVERTIRPIALNRKNALFAGHDVGAENWATIASLIETCKLNSVDPFAYLAATLTAIVNGHKQSRIDELLPWNWNKATQV
SIO_010081: CES85_RS00120
subclass of: SO_0000673
so part of: CES85_RS00120
location: 14866..16431
location: region:14866-16431:1
so has part: feature:14866-16431:1:exon

WP_095444072.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14866-16431:1:exon

CES85_RS00130
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
locus tag: CES85_RS00130
old locus tag: CES85_5865
pseudo: true
so part of: sequence
location: <16970..17536
location: region:16970-17536:1
so has part: feature:16970-17536:1:exon
subclass of: SO_0000010

position:16970:1
position: 16970
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:17536:1
position: 17536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16970-17536:1:exon

CES85_RS00130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
locus tag: CES85_RS00130
old locus tag: CES85_5865
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006699325.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: TIGR02391 family protein
SIO_010081: CES85_RS00130
subclass of: SO_0000673
so part of: CES85_RS00130
location: <16970..17536
location: region:16970-17536:1
so has part: feature:16970-17536:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16970-17536:1:exon

CES85_RS00140
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
locus tag: CES85_RS00140
old locus tag: CES85_5866
so part of: sequence
location: complement(17859..18098)
location: region:17859-18098:-1
so has part: feature:17859-18098:-1:exon
subclass of: SO_0000010

position:17859:-1
position: 17859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18098:-1
position: 18098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17859-18098:-1:exon

CES85_RS00140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
locus tag: CES85_RS00140
old locus tag: CES85_5866
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAANAAKLIGLFSLVAAAFLAIVGFAALDRGGVFFLVYAASALVTGVLMFCISSIVENTARSAAAQERLAEKLGKLNKD
SIO_010081: CES85_RS00140
subclass of: SO_0000673
so part of: CES85_RS00140
location: complement(17859..18098)
location: region:17859-18098:-1
so has part: feature:17859-18098:-1:exon

WP_095444076.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17859-18098:-1:exon

CES85_RS00145
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
locus tag: CES85_RS00145
so part of: sequence
location: complement(18172..18729)
location: region:18172-18729:-1
so has part: feature:18172-18729:-1:exon
subclass of: SO_0000010

position:18172:-1
position: 18172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18729:-1
position: 18729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18172-18729:-1:exon

CES85_RS00145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
locus tag: CES85_RS00145
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRKDRIYRTGEEATNNALTRIHRLTLHAPKDQSFSKDTFHDWLVALIGASRLLPQDHRIHSITHRLYLGNSHMSWTAVDFIAFYEDYVDDLWPILDSIQDVPTDTKVSPDPMLENWRQRINTVDTFSEKLQLCSEIANSDKVTPPLKNIAAEAASTLRSYRKRVRLQDHETRSIENAFYKVRMYL
SIO_010081: CES85_RS00145
subclass of: SO_0000673
so part of: CES85_RS00145
location: complement(18172..18729)
location: region:18172-18729:-1
so has part: feature:18172-18729:-1:exon

WP_095444077.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18172-18729:-1:exon

CES85_RS00155
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
locus tag: CES85_RS00155
old locus tag: CES85_5869
so part of: sequence
location: 19170..19550
location: region:19170-19550:1
so has part: feature:19170-19550:1:exon
subclass of: SO_0000010

position:19170:1
position: 19170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19550:1
position: 19550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19170-19550:1:exon

CES85_RS00155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
locus tag: CES85_RS00155
old locus tag: CES85_5869
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQHAVPAIAPARPRSGHNMRSIVHRAQSRKPRNLCAMIIDGEAVWVDINRYEGSGPAVVIEHNGRIRLIDIEAEALGYKLFGARTALGGWFPSGLSKRGMARNSVIVVGMVIDAPIRGDVIEGELA
SIO_010081: CES85_RS00155
subclass of: SO_0000673
so part of: CES85_RS00155
location: 19170..19550
location: region:19170-19550:1
so has part: feature:19170-19550:1:exon

WP_095444079.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19170-19550:1:exon

CES85_RS28050
type: Gene
subclass of: SO_0000704
RO_0002162: 271865
locus tag: CES85_RS28050
old locus tag: CES85_5870
so part of: sequence
location: 19547..19681
location: region:19547-19681:1
so has part: feature:19547-19681:1:exon
subclass of: SO_0000010

position:19547:1
position: 19547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19681:1
position: 19681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19547-19681:1:exon

CES85_RS28050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 271865
locus tag: CES85_RS28050
old locus tag: CES85_5870
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTPIETAREAFFELDDIIGRLNSAICVMDMLTENTPQNLGTIIR
SIO_010081: CES85_RS28050
subclass of: SO_0000673
so part of: CES85_RS28050
location: 19547..19681
location: region:19547-19681:1
so has part: feature:19547-19681:1:exon

WP_280523371.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19547-19681:1:exon