Pusillibacter faecalis strain MM59 plasmid pMM59_02.
Bacteria; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Pusillibacter.
Vescimonas gen. nov., Vescimonas coprocola sp. nov., Vescimonas fastidiosa sp. nov., Pusillimonas gen. nov. and Pusillimonas faecalis sp. nov. isolated from human faeces
Int. J. Syst. Evol. Microbiol. 71 (2021) In press
Submitted (03-SEP-2020) Contact:Yuko Shigeno RIKEN, Center for Brain Science; 2-1 Hirosawa, Wako-shi, Saitama 351-0198, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP023422.1.\nAnnotated at DFAST https://dfast.nig.ac.jp/\n\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Flye v. 2.6\nGenome Coverage :: 1814X\nSequencing Technology :: Oxford Nanopore Technologies MinION;\n Illumina Miseq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/19/2023 02:20:35\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,459\nCDSs (total) :: 3,385\nGenes (coding) :: 3,338\nCDSs (with protein) :: 3,338\nGenes (RNA) :: 74\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 4\nPseudo Genes (total) :: 47\nCDSs (without protein) :: 47\nPseudo Genes (ambiguous residues) :: 0 of 47\nPseudo Genes (frameshifted) :: 21 of 47\nPseudo Genes (incomplete) :: 24 of 47\nPseudo Genes (internal stop) :: 7 of 47\nPseudo Genes (multiple problems) :: 5 of 47\n##Genome-Annotation-Data-END##
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005948231.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007048762.1
type II toxin-antitoxin system YafQ family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_005948237.1
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_016324509.1
COORDINATES: similar to AA sequence:RefSeq:WP_007596194.1
GO:0006310 - DNA recombination [Evidence IEA]