Pusillibacter faecalis strain MM59 plasmid pMM59_02.
type: Entry
definition: Pusillibacter faecalis strain MM59 plasmid pMM59_02.
sequence version: NZ_AP023422.1
sequence date: 2023-05-19
sequence: sequence
division: CON
label: NZ_AP023422.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00239552
keyword: RefSeq
source: Pusillibacter faecalis
organism: Pusillibacter faecalis
taxonomy: Bacteria; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Pusillibacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP023422.1.\nAnnotated at DFAST https://dfast.nig.ac.jp/\n\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Flye v. 2.6\nGenome Coverage :: 1814X\nSequencing Technology :: Oxford Nanopore Technologies MinION;\n Illumina Miseq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/19/2023 02:20:35\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,459\nCDSs (total) :: 3,385\nGenes (coding) :: 3,338\nCDSs (with protein) :: 3,338\nGenes (RNA) :: 74\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 4\nPseudo Genes (total) :: 47\nCDSs (without protein) :: 47\nPseudo Genes (ambiguous residues) :: 0 of 47\nPseudo Genes (frameshifted) :: 21 of 47\nPseudo Genes (incomplete) :: 24 of 47\nPseudo Genes (internal stop) :: 7 of 47\nPseudo Genes (multiple problems) :: 5 of 47\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 12107
topology: linear
so has quality: SO_0000987
location: 1..12107
location: region:1-12107:1
RO_0002162: 2714358

NZ_AP023422
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00239552
type: BioSample
SIO_000068: biosample

1
title: Vescimonas gen. nov., Vescimonas coprocola sp. nov., Vescimonas fastidiosa sp. nov., Pusillimonas gen. nov. and Pusillimonas faecalis sp. nov. isolated from human faeces
author: Kitahara, M.
author: Shigeno, Y.
author: Shime, M.
author: Matsumoto, Y.
author: Nakamura, S.
author: Motooka, D.
author: Fukuoka, S.
author: Nishikawa, H.
author: Benno, Y.
journal: Int. J. Syst. Evol. Microbiol. 71 (2021) In press
comments: DOI:10.1099/ijsem.0.005066

2
title: Direct Submission
author: Shigeno, Y.
author: Kitahara, M.
author: Matsumoto, Y.
author: Nakamura, S.
author: Motooka, D.
journal: Submitted (03-SEP-2020) Contact:Yuko Shigeno RIKEN, Center for Brain Science; 2-1 Hirosawa, Wako-shi, Saitama 351-0198, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

position:12107:1
position: 12107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12107:1:source
so part of: sequence
organism: Pusillibacter faecalis
mol type: genomic DNA
strain: MM59
isolation source: feces
host: Homo sapiens
type material: type strain of Pusillibacter faecalis
plasmid: pMM59_02
country: Japan
lat lon: 35.90 N 139.94 E
collection date: 2019-03-12

2714358
type: Taxonomy
SIO_000068: taxonomy

KJS55_RS17185
type: Gene
subclass of: SO_0000704
RO_0002162: 2714358
locus tag: KJS55_RS17185
so part of: sequence
location: <1..214
location: region:1-214:1
so has part: feature:1-214:1:exon
subclass of: SO_0000010

position:214:1
position: 214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-214:1:exon

KJS55_RS17185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2714358
locus tag: KJS55_RS17185
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 2
transl table: 11
product: hypothetical protein
translation: LLCRILPCPIMPEMVVPIPLTRPFFCTVFPYFILLPFYHTATDKATSLLLSGEKVTQKHFHTAALYGLAV
SIO_010081: KJS55_RS17185
subclass of: SO_0000673
so part of: KJS55_RS17185
location: <1..214
location: region:1-214:1
so has part: feature:1-214:1:exon

WP_213543945.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-214:1:exon

KJS55_RS17190
type: Gene
subclass of: SO_0000704
RO_0002162: 2714358
locus tag: KJS55_RS17190
old locus tag: MM59RIKEN_34750
so part of: sequence
location: 477..1436
location: region:477-1436:1
so has part: feature:477-1436:1:exon
subclass of: SO_0000010

position:477:1
position: 477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1436:1
position: 1436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:477-1436:1:exon

KJS55_RS17190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2714358
locus tag: KJS55_RS17190
old locus tag: MM59RIKEN_34750
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKSLSIILSLAMVCTMSATAFAADSSTDLSAIADATIQVTQTTSESGAITNTFNNLDDFVNAVHTANPAISDYEIATYILDYTGQEYQDLPEEEILSFLTYDNISTSSSYVRVDDEGNTIVSNFDAIPLADWTSDDGYMKITTNYSYIKTVGREKYYSVWARGTWQEYPAIALQDAFVLGTSGTFDDSYSEYGSVSQTFTCTSGCTQKTYKNRSVSSSNTIDEDLSFDYERFIPVMHFVPISPRCDYCTGGARDYYFSAYIRYGMIADESVNIQAGYAHKTIGFGDISVGIDVNGTPSFSASVATVVPYVARAVTVTY
SIO_010081: KJS55_RS17190
subclass of: SO_0000673
so part of: KJS55_RS17190
location: 477..1436
location: region:477-1436:1
so has part: feature:477-1436:1:exon

WP_118626741.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:477-1436:1:exon

KJS55_RS17195
type: Gene
subclass of: SO_0000704
RO_0002162: 2714358
locus tag: KJS55_RS17195
old locus tag: MM59RIKEN_34760
so part of: sequence
location: complement(1488..1637)
location: region:1488-1637:-1
so has part: feature:1488-1637:-1:exon
subclass of: SO_0000010

position:1488:-1
position: 1488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1637:-1
position: 1637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1488-1637:-1:exon

KJS55_RS17195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2714358
locus tag: KJS55_RS17195
old locus tag: MM59RIKEN_34760
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEFIAAIITFIAGYLGATMGAVMNWPDAGAIVAITVMGFFILKRMKKDE
SIO_010081: KJS55_RS17195
subclass of: SO_0000673
so part of: KJS55_RS17195
location: complement(1488..1637)
location: region:1488-1637:-1
so has part: feature:1488-1637:-1:exon

WP_177610831.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1488-1637:-1:exon

KJS55_RS17200
type: Gene
subclass of: SO_0000704
RO_0002162: 2714358
locus tag: KJS55_RS17200
old locus tag: MM59RIKEN_34770
so part of: sequence
location: complement(1654..2148)
location: region:1654-2148:-1
so has part: feature:1654-2148:-1:exon
subclass of: SO_0000010

position:1654:-1
position: 1654
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2148:-1
position: 2148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1654-2148:-1:exon

KJS55_RS17200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2714358
locus tag: KJS55_RS17200
old locus tag: MM59RIKEN_34770
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005948231.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKTIRQIADEIGVSKTAVSKQIANLGLRSGLRKNGNQFAIDEQQEALIKQAFFEKTKTEIENQSQTKTQTENHEVGDLVCVLRATIDTLQGQLEVKDRQIEQQAKTITRLTDALTAAQQTVQAAQALHAGTMHQQRLSSEVGCAVASVELERPKSFWSKIFRK
SIO_010081: KJS55_RS17200
subclass of: SO_0000673
so part of: KJS55_RS17200
location: complement(1654..2148)
location: region:1654-2148:-1
so has part: feature:1654-2148:-1:exon

WP_118626742.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1654-2148:-1:exon

KJS55_RS17205
type: Gene
subclass of: SO_0000704
RO_0002162: 2714358
locus tag: KJS55_RS17205
old locus tag: MM59RIKEN_34780
so part of: sequence
location: complement(2177..2449)
location: region:2177-2449:-1
so has part: feature:2177-2449:-1:exon
subclass of: SO_0000010

position:2177:-1
position: 2177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2449:-1
position: 2449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2177-2449:-1:exon

KJS55_RS17205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2714358
locus tag: KJS55_RS17205
old locus tag: MM59RIKEN_34780
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007048762.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MLTIKYQTAFKKDYKRIVRRGYDVRLLEEVISILAEQKPLPEIYRDHNLSGDYIGCRECHITPDWLLIYEIKNDELVLCLTRTGTHSDLF
SIO_010081: KJS55_RS17205
subclass of: SO_0000673
so part of: KJS55_RS17205
location: complement(2177..2449)
location: region:2177-2449:-1
so has part: feature:2177-2449:-1:exon

WP_118626743.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2177-2449:-1:exon

KJS55_RS17210
type: Gene
subclass of: SO_0000704
RO_0002162: 2714358
locus tag: KJS55_RS17210
old locus tag: MM59RIKEN_34790
so part of: sequence
location: complement(2436..2708)
location: region:2436-2708:-1
so has part: feature:2436-2708:-1:exon
subclass of: SO_0000010

position:2436:-1
position: 2436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2708:-1
position: 2708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2436-2708:-1:exon

KJS55_RS17210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2714358
locus tag: KJS55_RS17210
old locus tag: MM59RIKEN_34790
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005948237.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MASTNINIRMDTDLKMQFEAFCADMGMTMTTAFNVFAKKAVREYRIPFEISGEVPNAVTRKAIEDVENGIGMSRAFSSVKELMEDLNADD
SIO_010081: KJS55_RS17210
subclass of: SO_0000673
so part of: KJS55_RS17210
location: complement(2436..2708)
location: region:2436-2708:-1
so has part: feature:2436-2708:-1:exon

WP_118626744.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2436-2708:-1:exon

KJS55_RS17215
type: Gene
subclass of: SO_0000704
RO_0002162: 2714358
locus tag: KJS55_RS17215
old locus tag: MM59RIKEN_34800
so part of: sequence
location: complement(2942..4444)
location: region:2942-4444:-1
so has part: feature:2942-4444:-1:exon
subclass of: SO_0000010

position:2942:-1
position: 2942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4444:-1
position: 4444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2942-4444:-1:exon

KJS55_RS17215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2714358
locus tag: KJS55_RS17215
old locus tag: MM59RIKEN_34800
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016324509.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTMNQQAALERQRALYREKNAHLGKYLEPVEPFEFYREIFPEGSFERRGHFEDAKGNGIALVVPPKNGVALEIQGDGKAHRHVITDELKELEDIKDTEFTIMSPISYFGRKRNGKNARYLYAMVFDLDGVGMPQLRDTLHQMNKDIIPKATFVVNSGTGLHLYYVLTEPIPMYPHNQKILKELKYALTRQIWNRFTSSIREPQMQGILQGFRVVGTGTKLGKEYPVVAYRYGGAVELEKLFDYIPDSNGEQQRIQALMRKSRLSLAEAKEKYPDWYERRVVKKERRGRWTVKRDLYDWWLHRIADEIRVGHRFYGIMTLAIYAKKCGIDEEELRHDAFALIKPYDDMSVEDINRFTKDDVVCALEMFNEDYVTFPRDDIAKISGLTMPVNKRNWRKQKDHLEIARAIRDIGVRQKGKKDWRDGNGRHNAEWEVYRWRQQHPEGRKADCIRDTGLSKPTVYKWWDSEPPAVWQEDGHMVARVRPSQALSDLLVEALKKDGD
SIO_010081: KJS55_RS17215
subclass of: SO_0000673
so part of: KJS55_RS17215
location: complement(2942..4444)
location: region:2942-4444:-1
so has part: feature:2942-4444:-1:exon

WP_177610833.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2942-4444:-1:exon

KJS55_RS17220
type: Gene
subclass of: SO_0000704
RO_0002162: 2714358
locus tag: KJS55_RS17220
old locus tag: MM59RIKEN_34810
so part of: sequence
location: complement(4830..6134)
location: region:4830-6134:-1
so has part: feature:4830-6134:-1:exon
subclass of: SO_0000010

position:4830:-1
position: 4830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6134:-1
position: 6134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4830-6134:-1:exon

KJS55_RS17220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2714358
locus tag: KJS55_RS17220
old locus tag: MM59RIKEN_34810
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007596194.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid recombination protein
translation: MQKKGRVSGIGTTISGMMGQGSIRHNNREFTAANVDRDRSGQNIVFVNEDLKQVYHELFDAALEIYNAGKKKTRDKIPDYYEHIRQSKQEKLFHEAIFQIGNLSDCGCGSEGGRRAAEALTEFAKTFQERNPHLRVFNMVLHMDEATPHLHVDYIPVATEQTRGLSTRVSMKQALKQQGFTGLGRKQTEWKAWMDREKDMLTEIAQQHEFEIISLGSNRRHMDLPEYRAAIQEAEAVQEQTVASTQELTDLQEQRTELKREIKSLSGASAALKAAERVRVDFDAIRPEKTLTGAVKGVTVEQIRELKAAAMSGAASKQENVELKKENAALRKDKAELQKKVPSIMDRMEAAAKQNQLERLRYENMELKEALEEERSFSDRLLEGIDRVLDMLERHLPKQLLDLVDKARDLLPEHQSYRQEQQREKGHSWGDMSL
SIO_010081: KJS55_RS17220
subclass of: SO_0000673
so part of: KJS55_RS17220
location: complement(4830..6134)
location: region:4830-6134:-1
so has part: feature:4830-6134:-1:exon

WP_228300620.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4830-6134:-1:exon

KJS55_RS17225
type: Gene
subclass of: SO_0000704
RO_0002162: 2714358
locus tag: KJS55_RS17225
old locus tag: MM59RIKEN_34820
so part of: sequence
location: 6530..7489
location: region:6530-7489:1
so has part: feature:6530-7489:1:exon
subclass of: SO_0000010

position:6530:1
position: 6530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7489:1
position: 7489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6530-7489:1:exon

KJS55_RS17225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2714358
locus tag: KJS55_RS17225
old locus tag: MM59RIKEN_34820
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKSLSIILSLAMVCTMSATAFAADSSTDLSAIADATIQVTQTTSESGAITNTFNNLDDFVNAVHTANPAISDYEIATYILDYTGQEYQDLPEEEILSFLTYDNISTSSSYVRVDDEGNTIVSNFDAIPLADWTSDDGYMKITTNYSYIKTVGREKYYSVWARGTWQEYPAIALQDAFVLGTSGTFDDSYSEYGSVSQTFTCTSGCTQKTYKNRSVSSSNTIDEDLSFDYERFIPVMHFVPISPRCDYCTGGARDYYFSAYIRYGMIADESVNIQAGYAHKTIGFGDISVGIDVNGTPSFSASVATVVPYVARAVTVTY
SIO_010081: KJS55_RS17225
subclass of: SO_0000673
so part of: KJS55_RS17225
location: 6530..7489
location: region:6530-7489:1
so has part: feature:6530-7489:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6530-7489:1:exon

KJS55_RS17230
type: Gene
subclass of: SO_0000704
RO_0002162: 2714358
locus tag: KJS55_RS17230
old locus tag: MM59RIKEN_34830
so part of: sequence
location: complement(7541..7690)
location: region:7541-7690:-1
so has part: feature:7541-7690:-1:exon
subclass of: SO_0000010

position:7541:-1
position: 7541
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7690:-1
position: 7690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7541-7690:-1:exon

KJS55_RS17230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2714358
locus tag: KJS55_RS17230
old locus tag: MM59RIKEN_34830
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEFIAAIITFIAGYLGATMGAVMNWPDAGAIVAITVMGFFILKRMKKDE
SIO_010081: KJS55_RS17230
subclass of: SO_0000673
so part of: KJS55_RS17230
location: complement(7541..7690)
location: region:7541-7690:-1
so has part: feature:7541-7690:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7541-7690:-1:exon

KJS55_RS17235
type: Gene
subclass of: SO_0000704
RO_0002162: 2714358
locus tag: KJS55_RS17235
old locus tag: MM59RIKEN_34840
so part of: sequence
location: complement(7707..8201)
location: region:7707-8201:-1
so has part: feature:7707-8201:-1:exon
subclass of: SO_0000010

position:7707:-1
position: 7707
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8201:-1
position: 8201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7707-8201:-1:exon

KJS55_RS17235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2714358
locus tag: KJS55_RS17235
old locus tag: MM59RIKEN_34840
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005948231.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKTIRQIADEIGVSKTAVSKQIANLGLRSGLRKNGNQFAIDEQQEALIKQAFFEKTKTEIENQSQTKTQTENHEVGDLVCVLRATIDTLQGQLEVKDRQIEQQAKTITRLTDALTAAQQTVQAAQALHAGTMHQQRLSSEVGCAVASVELERPKSFWSKIFRK
SIO_010081: KJS55_RS17235
subclass of: SO_0000673
so part of: KJS55_RS17235
location: complement(7707..8201)
location: region:7707-8201:-1
so has part: feature:7707-8201:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7707-8201:-1:exon

KJS55_RS17240
type: Gene
subclass of: SO_0000704
RO_0002162: 2714358
locus tag: KJS55_RS17240
old locus tag: MM59RIKEN_34850
so part of: sequence
location: complement(8230..8502)
location: region:8230-8502:-1
so has part: feature:8230-8502:-1:exon
subclass of: SO_0000010

position:8230:-1
position: 8230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8502:-1
position: 8502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8230-8502:-1:exon

KJS55_RS17240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2714358
locus tag: KJS55_RS17240
old locus tag: MM59RIKEN_34850
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007048762.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MLTIKYQTAFKKDYKRIVRRGYDVRLLEEVISILAEQKPLPEIYRDHNLSGDYIGCRECHITPDWLLIYEIKNDELVLCLTRTGTHSDLF
SIO_010081: KJS55_RS17240
subclass of: SO_0000673
so part of: KJS55_RS17240
location: complement(8230..8502)
location: region:8230-8502:-1
so has part: feature:8230-8502:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8230-8502:-1:exon

KJS55_RS17245
type: Gene
subclass of: SO_0000704
RO_0002162: 2714358
locus tag: KJS55_RS17245
old locus tag: MM59RIKEN_34860
so part of: sequence
location: complement(8489..8761)
location: region:8489-8761:-1
so has part: feature:8489-8761:-1:exon
subclass of: SO_0000010

position:8489:-1
position: 8489
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8761:-1
position: 8761
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8489-8761:-1:exon

KJS55_RS17245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2714358
locus tag: KJS55_RS17245
old locus tag: MM59RIKEN_34860
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005948237.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MASTNINIRMDTDLKMQFEAFCADMGMTMTTAFNVFAKKAVREYRIPFEISGEVPNAVTRKAIEDVENGIGMSRAFSSVKELMEDLNADD
SIO_010081: KJS55_RS17245
subclass of: SO_0000673
so part of: KJS55_RS17245
location: complement(8489..8761)
location: region:8489-8761:-1
so has part: feature:8489-8761:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8489-8761:-1:exon

KJS55_RS17250
type: Gene
subclass of: SO_0000704
RO_0002162: 2714358
locus tag: KJS55_RS17250
old locus tag: MM59RIKEN_34870
so part of: sequence
location: complement(8995..10497)
location: region:8995-10497:-1
so has part: feature:8995-10497:-1:exon
subclass of: SO_0000010

position:8995:-1
position: 8995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10497:-1
position: 10497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8995-10497:-1:exon

KJS55_RS17250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2714358
locus tag: KJS55_RS17250
old locus tag: MM59RIKEN_34870
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016324509.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTMNQQAALERQRALYREKNAHLGKYLEPVEPFEFYREIFPEGSFERRGHFEDAKGNGIALVVPPKNGVALEIQGDGKAHRHVITDELKELEDIKDTEFTIMSPISYFGRKRNGKNARYLYAMVFDLDGVGMPQLRDTLHQMNKDIIPKATFVVNSGTGLHLYYVLTEPIPMYPHNQKILKELKYALTRQIWNRFTSSIREPQMQGILQGFRVVGTGTKLGKEYPVVAYRYGGAVELEKLFDYIPDSNGEQQRIQALMRKSRLSLAEAKEKYPDWYERRVVKKERRGRWTVKRDLYDWWLHRIADEIRVGHRFYGIMTLAIYAKKCGIDEEELRHDAFALIKPYDDMSVEDINRFTKDDVVCALEMFNEDYVTFPRDDIAKISGLTMPVNKRNWRKQKDHLEIARAIRDIGVRQKGKKDWRDGNGRHNAEWEVYRWRQQHPEGRKADCIRDTGLSKPTVYKWWDSEPPAVWQEDGHMVARVRPSQALSDLLVEALKKDGD
SIO_010081: KJS55_RS17250
subclass of: SO_0000673
so part of: KJS55_RS17250
location: complement(8995..10497)
location: region:8995-10497:-1
so has part: feature:8995-10497:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8995-10497:-1:exon

KJS55_RS17255
type: Gene
subclass of: SO_0000704
RO_0002162: 2714358
locus tag: KJS55_RS17255
so part of: sequence
location: complement(10884..>12107)
location: region:10884-12107:-1
so has part: feature:10884-12107:-1:exon
subclass of: SO_0000010

position:10884:-1
position: 10884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12107:-1
position: 12107
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10884-12107:-1:exon

KJS55_RS17255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2714358
locus tag: KJS55_RS17255
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007596194.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid recombination protein
translation: REFTAANVDRDRSGQNIVFVNEDLKQVYHELFDAALEIYNAGKKKTRDKIPDYYEHIRQSKQEKLFHEAIFQIGNLSDCGCGSEGGRRAAEALTEFAKTFQERNPHLRVFNMVLHMDEATPHLHVDYIPVATEQTRGLSTRVSMKQALKQQGFTGLGRKQTEWKAWMDREKDMLTEIAQQHEFEIISLGSNRRHMDLPEYRAAIQEAEAVQEQTVASTQELTDLQEQRTELKREIKSLSGASAALKAAERVRVDFDAIRPEKTLTGAVKGVTVEQIRELKAAAMSGAASKQENVELKKENAALRKDKAELQKKVPSIMDRMEAAAKQNQLERLRYENMELKEALEEERSFSDRLLEGIDRVLDMLERHLPKQLLDLVDKARDLLPEHQSYRQEQQREKGHSWGDMSL
SIO_010081: KJS55_RS17255
subclass of: SO_0000673
so part of: KJS55_RS17255
location: complement(10884..>12107)
location: region:10884-12107:-1
so has part: feature:10884-12107:-1:exon

WP_213543946.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10884-12107:-1:exon