Pusillibacter faecalis strain MM59 plasmid pMM59_01.
Bacteria; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Pusillibacter.
Vescimonas gen. nov., Vescimonas coprocola sp. nov., Vescimonas fastidiosa sp. nov., Pusillimonas gen. nov. and Pusillimonas faecalis sp. nov. isolated from human faeces
Int. J. Syst. Evol. Microbiol. 71 (2021) In press
Submitted (03-SEP-2020) Contact:Yuko Shigeno RIKEN, Center for Brain Science; 2-1 Hirosawa, Wako-shi, Saitama 351-0198, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP023421.1.\nAnnotated at DFAST https://dfast.nig.ac.jp/\n\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Flye v. 2.6\nGenome Coverage :: 1814X\nSequencing Technology :: Oxford Nanopore Technologies MinION;\n Illumina Miseq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/19/2023 02:20:35\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,459\nCDSs (total) :: 3,385\nGenes (coding) :: 3,338\nCDSs (with protein) :: 3,338\nGenes (RNA) :: 74\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 4\nPseudo Genes (total) :: 47\nCDSs (without protein) :: 47\nPseudo Genes (ambiguous residues) :: 0 of 47\nPseudo Genes (frameshifted) :: 21 of 47\nPseudo Genes (incomplete) :: 24 of 47\nPseudo Genes (internal stop) :: 7 of 47\nPseudo Genes (multiple problems) :: 5 of 47\n##Genome-Annotation-Data-END##
COORDINATES: protein motif:HMM:NF039696.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013485554.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF024565.2
COORDINATES: protein motif:HMM:NF022062.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013703.2
COORDINATES: similar to AA sequence:RefSeq:WP_004163504.1
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0032775 - DNA methylation on adenine [Evidence IEA]
COORDINATES: protein motif:HMM:NF024783.2
GO:0004519 - endonuclease activity [Evidence IEA]
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016291851.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF014567.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
HAMP domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF015378.2
COORDINATES: protein motif:HMM:NF019450.2
COORDINATES: similar to AA sequence:RefSeq:WP_015565515.1
GO:0004632 - phosphopantothenate--cysteine ligase activity [Evidence IEA]; GO:0004633 - phosphopantothenoylcysteine decarboxylase activity [Evidence IEA]
GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]; GO:0015939 - pantothenate metabolic process [Evidence IEA]
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC
COORDINATES: protein motif:HMM:TIGR00671.1
GO:0004594 - pantothenate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF023166.2
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007488459.1
COORDINATES: similar to AA sequence:RefSeq:WP_007488458.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012739.2
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_016322859.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016295472.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003532366.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
polysaccharide deacetylase family protein
COORDINATES: protein motif:HMM:NF024811.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014117600.1
GO:0046872 - metal ion binding [Evidence IEA]
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002604293.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002583351.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF040786.1
selenium metabolism-associated LysR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018593666.1
GO:0004756 - selenide, water dikinase activity [Evidence IEA]
GO:0001887 - selenium compound metabolic process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:TIGR00475.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0001514 - selenocysteine incorporation [Evidence IEA]; GO:0006414 - translational elongation [Evidence IEA]
selenocysteine-specific translation elongation factor
COORDINATES: similar to AA sequence:RefSeq:WP_013162457.1
GO:0004125 - L-seryl-tRNASec selenium transferase activity [Evidence IEA]
GO:0016260 - selenocysteine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009214028.1
COORDINATES: similar to AA sequence:RefSeq:WP_009146013.1
COORDINATES: similar to AA sequence:RefSeq:WP_014268798.1
YedE family putative selenium transporter
COORDINATES: similar to AA sequence:RefSeq:WP_006575209.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_013498965.1
metal-dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014119801.1
COORDINATES: protein motif:HMM:NF025001.2
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005347471.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006183.0
GO:0017113 - dihydropyrimidine dehydrogenase (NADP+) activity [Evidence IEA]
GO:0006210 - thymine catabolic process [Evidence IEA]; GO:0006212 - uracil catabolic process [Evidence IEA]
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA
COORDINATES: protein motif:HMM:NF014081.2
COORDINATES: protein motif:HMM:NF012412.2
COORDINATES: protein motif:HMM:NF033504.1
GO:0050043 - lactate racemase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012686.2
COORDINATES: protein motif:HMM:NF014218.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012993.2
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
nitrilase-related carbon-nitrogen hydrolase
COORDINATES: protein motif:HMM:NF016999.2
GO:0010468 - regulation of gene expression [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004079570.1
GO:0008804 - carbamate kinase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014653.2
COORDINATES: protein motif:HMM:NF012385.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
sigma 54-interacting transcriptional regulator
COORDINATES: protein motif:HMM:NF005591.0
GO:0016805 - dipeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010293944.1
COORDINATES: protein motif:HMM:TIGR01893.1
COORDINATES: similar to AA sequence:RefSeq:WP_008521133.1
GO:0003864 - 3-methyl-2-oxobutanoate hydroxymethyltransferase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
3-methyl-2-oxobutanoate hydroxymethyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013379444.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008394561.1
COORDINATES: similar to AA sequence:RefSeq:WP_009729239.1
COORDINATES: similar to AA sequence:RefSeq:WP_002599894.1
COORDINATES: similar to AA sequence:RefSeq:WP_009289445.1
COORDINATES: similar to AA sequence:RefSeq:WP_003513132.1
GO:0005948 - acetolactate synthase complex [Evidence IEA]
GO:0003984 - acetolactate synthase activity [Evidence IEA]
GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO:0009099 - valine biosynthetic process [Evidence IEA]
biosynthetic-type acetolactate synthase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008981945.1
GO:1990610 - acetolactate synthase regulator activity [Evidence IEA]
GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009259283.1
COORDINATES: similar to AA sequence:RefSeq:WP_008981943.1
COORDINATES: similar to AA sequence:RefSeq:WP_009259285.1
COORDINATES: similar to AA sequence:RefSeq:WP_016282759.1
COORDINATES: similar to AA sequence:RefSeq:WP_003535736.1
COORDINATES: similar to AA sequence:RefSeq:WP_006575025.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: protein motif:HMM:NF024850.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF014684.2
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_020675038.1
COORDINATES: similar to AA sequence:RefSeq:WP_012525486.1
COORDINATES: protein motif:HMM:NF012766.2
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024950.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007492132.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0009374 - biotin binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004736 - pyruvate carboxylase activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0006090 - pyruvate metabolic process [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014405177.1
isocitrate/isopropylmalate dehydrogenase family protein
COORDINATES: protein motif:HMM:NF015563.2
GO:0015558 - secondary active p-aminobenzoyl-glutamate transmembrane transporter activity [Evidence IEA]
GO:1902604 - p-aminobenzoyl-glutamate transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013696.2
COORDINATES: protein motif:HMM:NF025608.2
GO:0009976 - tocopherol cyclase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009165093.1
COORDINATES: protein motif:HMM:NF019474.2
COORDINATES: similar to AA sequence:RefSeq:WP_015560721.1
COORDINATES: similar to AA sequence:RefSeq:WP_006860162.1
COORDINATES: similar to AA sequence:RefSeq:WP_006574012.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015541689.1
COORDINATES: similar to AA sequence:RefSeq:WP_014118531.1
alpha/beta-type small acid-soluble spore protein
COORDINATES: similar to AA sequence:RefSeq:WP_006428356.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015536668.1
GO:0008966 - phosphoglucosamine mutase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012742.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009321858.1
COORDINATES: similar to AA sequence:RefSeq:WP_005938991.1
COORDINATES: similar to AA sequence:RefSeq:WP_006235865.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013252334.1
GO:0004134 - 4-alpha-glucanotransferase activity [Evidence IEA]
GO:0005980 - glycogen catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002571639.1
COORDINATES: similar to AA sequence:RefSeq:WP_014117774.1
COORDINATES: similar to AA sequence:RefSeq:WP_009268329.1
COORDINATES: similar to AA sequence:RefSeq:WP_016322809.1
GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]
GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF025422.2
COORDINATES: similar to AA sequence:RefSeq:WP_011591025.1
histidine triad nucleotide-binding protein
COORDINATES: protein motif:HMM:NF012613.2
S-layer homology domain-containing protein
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: similar to AA sequence:RefSeq:WP_016323695.1
GO:0009290 - DNA import into cell involved in transformation [Evidence IEA]
DNA internalization-related competence protein ComEC/Rec2
COORDINATES: similar to AA sequence:RefSeq:WP_014118305.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016146604.1
COORDINATES: protein motif:HMM:NF039477.1
COORDINATES: similar to AA sequence:RefSeq:WP_016321523.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004819 - glutamine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006425 - glutaminyl-tRNA aminoacylation [Evidence IEA]
glutamine--tRNA ligase/YqeY domain fusion protein
COORDINATES: protein motif:HMM:TIGR00369.1
GO:0047617 - acyl-CoA hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025620.2
carbohydrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016324290.1
RNA polymerase sporulation sigma factor SigG
COORDINATES: similar to AA sequence:RefSeq:WP_014118297.1
COORDINATES: similar to AA sequence:RefSeq:WP_009260812.1
COORDINATES: similar to AA sequence:RefSeq:WP_016324288.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016324287.1
GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004034156.1
GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002578899.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014118213.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323444.1
COORDINATES: similar to AA sequence:RefSeq:WP_014118211.1
GO:0005515 - protein binding [Evidence IEA]
GO:0007059 - chromosome segregation [Evidence IEA]
COORDINATES: protein motif:HMM:NF022615.2
COORDINATES: similar to AA sequence:RefSeq:WP_014118209.1
spore germination protein GerW family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016323448.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
D-alanyl-D-alanine carboxypeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006572477.1
GO:0009982 - pseudouridine synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016323568.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008980589.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323566.1
GO:0004127 - cytidylate kinase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014118202.1
lysophospholipid acyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008980592.1
GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity [Evidence IEA]
GO:0050992 - dimethylallyl diphosphate biosynthetic process [Evidence IEA]; GO:0019288 - isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [Evidence IEA]
bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1
COORDINATES: similar to AA sequence:RefSeq:WP_015574744.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
GO:0046358 - butyrate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016323562.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323561.1
GO:0050518 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity [Evidence IEA]
GO:0019288 - isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [Evidence IEA]
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_015573678.1
GO:0008685 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity [Evidence IEA]
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
COORDINATES: protein motif:HMM:NF023251.2
COORDINATES: similar to AA sequence:RefSeq:WP_014118194.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323557.1
GO:0004016 - adenylate cyclase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019561.2
COORDINATES: similar to AA sequence:RefSeq:WP_016323555.1
SoxR reducing system RseC family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014118189.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323553.1
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016323552.1
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016323551.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323550.1
GO:0004385 - guanylate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016323549.1
GO:0000345 - cytosolic DNA-directed RNA polymerase complex [Evidence IEA]
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
DNA-directed RNA polymerase subunit omega
COORDINATES: similar to AA sequence:RefSeq:WP_009256882.1
GO:0005658 - alpha DNA polymerase:primase complex [Evidence IEA]
GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0003688 - DNA replication origin binding [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016323547.1
GO:0042586 - peptide deformylase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016323546.1
GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IEA]
GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014118180.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323544.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]; GO:0001510 - RNA methylation [Evidence IEA]
16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB
COORDINATES: similar to AA sequence:RefSeq:WP_014118178.1
GO:0016433 - rRNA (adenine) methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0031167 - rRNA methylation [Evidence IEA]
23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
COORDINATES: similar to AA sequence:RefSeq:WP_014118177.1
GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA]
GO:0006470 - protein dephosphorylation [Evidence IEA]
Stp1/IreP family PP2C-type Ser/Thr phosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_016323541.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
Stk1 family PASTA domain-containing Ser/Thr kinase
COORDINATES: similar to AA sequence:RefSeq:WP_014118175.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome small subunit-dependent GTPase A
COORDINATES: similar to AA sequence:RefSeq:WP_014118173.1
COORDINATES: similar to AA sequence:RefSeq:WP_007492764.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007492762.1
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007492760.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014118160.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0030436 - asexual sporulation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016323465.1
COORDINATES: protein motif:HMM:NF021090.2
COORDINATES: similar to AA sequence:RefSeq:WP_003518775.1
COORDINATES: similar to AA sequence:RefSeq:WP_014118231.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323469.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323470.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323472.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323473.1
Asp23/Gls24 family envelope stress response protein
COORDINATES: similar to AA sequence:RefSeq:WP_008980556.1
transcription antitermination factor NusB
COORDINATES: similar to AA sequence:RefSeq:WP_016323476.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016323477.1
COORDINATES: similar to AA sequence:RefSeq:WP_016146829.1
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012669.2
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014254731.1
GO:0006206 - pyrimidine nucleobase metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF005559.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014647.2
GO:0005886 - plasma membrane [Evidence IEA]
BMP family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004103770.1
COORDINATES: protein motif:HMM:NF017936.2
COORDINATES: similar to AA sequence:RefSeq:WP_016323479.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323480.1
GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity [Evidence IEA]
GO:0009240 - isopentenyl diphosphate biosynthetic process [Evidence IEA]; GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]; GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016323481.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016323482.1
COORDINATES: similar to AA sequence:RefSeq:WP_014118216.1
GO:0006525 - arginine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008980566.1
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002694964.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006858194.1
GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: nucleotide motif:Rfam:14.4:RF00230
T-box leader; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_007489385.1
GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA]
GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006353823.1
COORDINATES: similar to AA sequence:RefSeq:WP_017212136.1
GO:0008840 - 4-hydroxy-tetrahydrodipicolinate synthase activity [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
4-hydroxy-tetrahydrodipicolinate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_007489380.1
GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02669.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323492.1
GO:0016853 - isomerase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
COORDINATES: similar to AA sequence:RefSeq:WP_007489366.1
GO:0008479 - queuine tRNA-ribosyltransferase activity [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016323496.1
GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016323498.1
COORDINATES: similar to AA sequence:RefSeq:WP_020814690.1
GO:0009009 - site-specific recombinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016323500.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF037393.2
COORDINATES: similar to AA sequence:RefSeq:WP_018591979.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323502.1
GO:0008821 - crossover junction DNA endonuclease activity [Evidence IEA]
crossover junction endodeoxyribonuclease RuvC
COORDINATES: similar to AA sequence:RefSeq:WP_016323503.1
GO:0009379 - Holliday junction helicase complex [Evidence IEA]
GO:0009378 - four-way junction helicase activity [Evidence IEA]
Holliday junction branch migration protein RuvA
COORDINATES: similar to AA sequence:RefSeq:WP_007487905.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0009378 - four-way junction helicase activity [Evidence IEA]
Holliday junction branch migration DNA helicase RuvB
COORDINATES: similar to AA sequence:RefSeq:WP_016323507.1
COORDINATES: similar to AA sequence:RefSeq:WP_007487901.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323509.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323510.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016323511.1
GO:0051540 - metal cluster binding [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
Nif3-like dinuclear metal center hexameric protein
COORDINATES: similar to AA sequence:RefSeq:WP_007487893.1
YebC/PmpR family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016323527.1
COORDINATES: similar to AA sequence:RefSeq:WP_013485305.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0009037 - tyrosine-based site-specific recombinase activity [Evidence IEA]
GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007059 - chromosome segregation [Evidence IEA]; GO:0006313 - DNA transposition [Evidence IEA]
COORDINATES: protein motif:HMM:NF014371.2
GO:0005198 - structural molecule activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014118037.1
COORDINATES: protein motif:HMM:NF013670.2
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016323520.1
COORDINATES: similar to AA sequence:RefSeq:WP_011837827.1
COORDINATES: protein motif:HMM:NF012464.2
GO:0000150 - DNA strand exchange activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018163845.1
COORDINATES: similar to AA sequence:RefSeq:WP_005216256.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008980680.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024863.2
GDSL-type esterase/lipase family protein
COORDINATES: protein motif:HMM:NF025854.2
COORDINATES: protein motif:HMM:NF012722.2
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
histidine kinase dimerization/phospho-acceptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006574871.1
COORDINATES: similar to AA sequence:RefSeq:WP_006908639.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0071586 - CAAX-box protein processing [Evidence IEA]
CPBP family intramembrane metalloprotease
GO:0015297 - antiporter activity [Evidence IEA]; GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024804.2
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005951722.1
COORDINATES: similar to AA sequence:RefSeq:WP_002564992.1
COORDINATES: similar to AA sequence:RefSeq:WP_008980399.1
COORDINATES: similar to AA sequence:RefSeq:WP_006574972.1
(deoxy)nucleoside triphosphate pyrophosphohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_016148562.1
COORDINATES: similar to AA sequence:RefSeq:WP_014471064.1
COORDINATES: similar to AA sequence:RefSeq:WP_018884850.1
COORDINATES: similar to AA sequence:RefSeq:WP_009261409.1
N-terminal region resembles flavodoxins. C-terminal ferrodoxin region binds two 4Fe-4S clusters; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008980452.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006575335.1
GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014256713.1
GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003826566.1
COORDINATES: similar to AA sequence:RefSeq:WP_006781353.1
COORDINATES: similar to AA sequence:RefSeq:WP_008981851.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006875829.1
class I SAM-dependent DNA methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_002567455.1
COORDINATES: similar to AA sequence:RefSeq:WP_002567454.1
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002567451.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
type I restriction-modification enzyme R subunit C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009323462.1
COORDINATES: protein motif:HMM:NF017524.2
plasmid mobilization relaxosome protein MobC
COORDINATES: protein motif:HMM:NF018653.2
COORDINATES: similar to AA sequence:RefSeq:WP_004845313.1
COORDINATES: similar to AA sequence:RefSeq:WP_015527049.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_007488978.1
COORDINATES: similar to AA sequence:RefSeq:WP_003515625.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]
GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014118052.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323516.1
GO:0008764 - UDP-N-acetylmuramoylalanine-D-glutamate ligase activity [Evidence IEA]
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
COORDINATES: nucleotide motif:Rfam:14.4:RF00010
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_004616789.1
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
class II fructose-1,6-bisphosphate aldolase
COORDINATES: similar to AA sequence:RefSeq:WP_016323529.1
COORDINATES: protein motif:HMM:NF013672.2
COORDINATES: similar to AA sequence:RefSeq:WP_007488995.1
COORDINATES: similar to AA sequence:RefSeq:WP_003526032.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003908 - methylated-DNA-[protein]-cysteine S-methyltransferase activity [Evidence IEA]
methylated-DNA--[protein]-cysteine S-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014078308.1
manganese efflux pump MntP family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014117829.1
GO:0000023 - maltose metabolic process [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
COORDINATES: similar to AA sequence:RefSeq:WP_016321882.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF028234.2
COORDINATES: similar to AA sequence:RefSeq:WP_003497706.1
COORDINATES: similar to AA sequence:RefSeq:WP_015565089.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005940175.1
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009221771.1
COORDINATES: similar to AA sequence:RefSeq:WP_005916773.1
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: protein motif:HMM:NF001080.0
GO:0008176 - tRNA (guanine-N7-)-methyltransferase activity [Evidence IEA]
tRNA (guanosine(46)-N7)-methyltransferase TrmB
COORDINATES: similar to AA sequence:RefSeq:WP_015523788.1
GO:0019843 - rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003518898.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016323577.1
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016323582.1
COORDINATES: similar to AA sequence:RefSeq:WP_006575187.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_016323588.1
COORDINATES: similar to AA sequence:RefSeq:WP_014117817.1
COORDINATES: similar to AA sequence:RefSeq:WP_014117785.1
GO:0140110 - transcription regulator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007489832.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0004521 - RNA endonuclease activity [Evidence IEA]
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_016323594.1
GO:0008784 - alanine racemase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016323595.1
COORDINATES: similar to AA sequence:RefSeq:WP_006574662.1
GO:0052855 - ADP-dependent NAD(P)H-hydrate dehydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024252.2
COORDINATES: similar to AA sequence:RefSeq:WP_005947084.1
COORDINATES: similar to AA sequence:RefSeq:WP_008981674.1
GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IEA]
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]
GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]
phenylalanine--tRNA ligase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_009256992.1
COORDINATES: similar to AA sequence:RefSeq:WP_015520053.1
COORDINATES: similar to AA sequence:RefSeq:WP_002578728.1
COORDINATES: similar to AA sequence:RefSeq:WP_002569775.1
COORDINATES: similar to AA sequence:RefSeq:WP_009296947.1
COORDINATES: similar to AA sequence:RefSeq:WP_002578725.1
cysteine-rich VLP domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002584986.1
COORDINATES: similar to AA sequence:RefSeq:WP_002584987.1
COORDINATES: similar to AA sequence:RefSeq:WP_001255868.1
aminoglycoside 6-adenylyltransferase AadE
COORDINATES: similar to AA sequence:RefSeq:WP_004845208.1
COORDINATES: similar to AA sequence:RefSeq:WP_015538795.1
COORDINATES: similar to AA sequence:RefSeq:WP_016324298.1
COORDINATES: similar to AA sequence:RefSeq:WP_016324299.1
COORDINATES: similar to AA sequence:RefSeq:WP_016324300.1
GO:0008932 - lytic endotransglycosylase activity [Evidence IEA]
GO:0071555 - cell wall organization [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007495787.1
COORDINATES: similar to AA sequence:RefSeq:WP_014118002.1
WecB/TagA/CpsF family glycosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_016324304.1
COORDINATES: similar to AA sequence:RefSeq:WP_008980323.1
COORDINATES: similar to AA sequence:RefSeq:WP_016324306.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024986.2
COORDINATES: similar to AA sequence:RefSeq:WP_010010482.1
COORDINATES: similar to AA sequence:RefSeq:WP_016324308.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016324316.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
BlaI/MecI/CopY family transcriptional regulator
COORDINATES: protein motif:HMM:NF017390.2
COORDINATES: similar to AA sequence:RefSeq:WP_007493393.1
COORDINATES: similar to AA sequence:RefSeq:WP_007493394.1
COORDINATES: protein motif:HMM:NF025628.2
COORDINATES: similar to AA sequence:RefSeq:WP_009172012.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014118749.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
putative DNA modification/repair radical SAM protein
COORDINATES: similar to AA sequence:RefSeq:WP_016323685.1
GO:0005575 - cellular_component [Evidence IEA]
TIGR03915 family putative DNA repair protein
COORDINATES: similar to AA sequence:RefSeq:WP_016323686.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323687.1
GO:0004672 - protein kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016323688.1
GO:0043856 - anti-sigma factor antagonist activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016323690.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004832 - valine-tRNA ligase activity [Evidence IEA]
GO:0006438 - valyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_014118009.1
RNA polymerase sporulation sigma factor SigE
COORDINATES: protein motif:HMM:NF015384.2
COORDINATES: similar to AA sequence:RefSeq:WP_014118498.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323633.1
GO:0003676 - nucleic acid binding [Evidence IEA]
S1 RNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016323634.1
replication-associated recombination protein A
COORDINATES: similar to AA sequence:RefSeq:WP_016323636.1
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016323638.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323639.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323640.1
COORDINATES: similar to AA sequence:RefSeq:WP_007489707.1
COORDINATES: similar to AA sequence:RefSeq:WP_005951268.1
COORDINATES: similar to AA sequence:RefSeq:WP_005951269.1
COORDINATES: similar to AA sequence:RefSeq:WP_004604799.1
COORDINATES: similar to AA sequence:RefSeq:WP_004078299.1
COORDINATES: similar to AA sequence:RefSeq:WP_005951272.1
COORDINATES: similar to AA sequence:RefSeq:WP_004059409.1
COORDINATES: similar to AA sequence:RefSeq:WP_007489820.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007489818.1
COORDINATES: similar to AA sequence:RefSeq:WP_006355500.1
COORDINATES: similar to AA sequence:RefSeq:WP_003532362.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323641.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323642.1
GO:0008761 - UDP-N-acetylglucosamine 2-epimerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
COORDINATES: similar to AA sequence:RefSeq:WP_016323643.1
COORDINATES: similar to AA sequence:RefSeq:WP_009256730.1
GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA]
GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015513420.1
COORDINATES: similar to AA sequence:RefSeq:WP_009005580.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025622.2
glucosyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007488264.1
GO:0009332 - glutamate-tRNA ligase complex [Evidence IEA]
GO:0004818 - glutamate-tRNA ligase activity [Evidence IEA]
GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016323648.1
GO:0004071 - aspartate-ammonia ligase activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016324032.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323650.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323661.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323662.1
COORDINATES: similar to AA sequence:RefSeq:WP_009257889.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323664.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323665.1
COORDINATES: similar to AA sequence:RefSeq:WP_006571169.1
COORDINATES: similar to AA sequence:RefSeq:WP_008979917.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323668.1
COORDINATES: similar to AA sequence:RefSeq:WP_005586858.1
COORDINATES: similar to AA sequence:RefSeq:WP_012064024.1
COORDINATES: similar to AA sequence:RefSeq:WP_005659867.1
COORDINATES: similar to AA sequence:RefSeq:WP_002577219.1
COORDINATES: protein motif:HMM:NF012706.2
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
COORDINATES: protein motif:HMM:NF012596.2
enoyl-CoA hydratase/isomerase family protein
COORDINATES: protein motif:HMM:NF024938.2
COORDINATES: similar to AA sequence:RefSeq:WP_004094028.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013626279.1
COORDINATES: similar to AA sequence:RefSeq:WP_016321162.1
COORDINATES: similar to AA sequence:RefSeq:WP_016321161.1
GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
GO:0000724 - double-strand break repair via homologous recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016321160.1
COORDINATES: similar to AA sequence:RefSeq:WP_014118093.1
COORDINATES: similar to AA sequence:RefSeq:WP_014118602.1
COORDINATES: similar to AA sequence:RefSeq:WP_014118603.1
COORDINATES: similar to AA sequence:RefSeq:WP_015525494.1
COORDINATES: similar to AA sequence:RefSeq:WP_008981388.1
GO:0050515 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity [Evidence IEA]
GO:0016114 - terpenoid biosynthetic process [Evidence IEA]
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
COORDINATES: similar to AA sequence:RefSeq:WP_016321767.1
COORDINATES: similar to AA sequence:RefSeq:WP_012743726.1
bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH
COORDINATES: similar to AA sequence:RefSeq:WP_006574097.1
COORDINATES: similar to AA sequence:RefSeq:WP_009260263.1
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016323078.1
NFACT RNA binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014117977.1
GO:0004525 - ribonuclease III activity [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
ribonuclease III domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007495781.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323070.1
COORDINATES: similar to AA sequence:RefSeq:WP_016323071.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0051775 - response to redox state [Evidence IEA]
redox-sensing transcriptional repressor Rex
COORDINATES: protein motif:HMM:NF024909.2
COORDINATES: similar to AA sequence:RefSeq:WP_016296486.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008428501.1
carbon-nitrogen hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019123001.1
COORDINATES: protein motif:HMM:NF025885.2
COORDINATES: similar to AA sequence:RefSeq:WP_002584851.1
COORDINATES: similar to AA sequence:RefSeq:WP_007047858.1
COORDINATES: similar to AA sequence:RefSeq:WP_016297224.1
NifB/NifX family molybdenum-iron cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016322913.1
class II aldolase/adducin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020549955.1
COORDINATES: similar to AA sequence:RefSeq:WP_007111316.1
COORDINATES: similar to AA sequence:RefSeq:WP_016322912.1
GO:0046523 - S-methyl-5-thioribose-1-phosphate isomerase activity [Evidence IEA]
GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]
S-methyl-5-thioribose-1-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_012200056.1
COORDINATES: similar to AA sequence:RefSeq:WP_016322911.1
GO:0004731 - purine-nucleoside phosphorylase activity [Evidence IEA]
GO:0043096 - purine nucleobase salvage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004038760.1
COORDINATES: similar to AA sequence:RefSeq:WP_013607213.1
COORDINATES: similar to AA sequence:RefSeq:WP_009535328.1
COORDINATES: similar to AA sequence:RefSeq:WP_008717665.1
COORDINATES: similar to AA sequence:RefSeq:WP_005809910.1
COORDINATES: similar to AA sequence:RefSeq:WP_019161272.1
COORDINATES: similar to AA sequence:RefSeq:WP_014116917.1
5-bromo-4-chloroindolyl phosphate hydrolysis family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008981289.1
COORDINATES: protein motif:HMM:NF025156.2
COORDINATES: similar to AA sequence:RefSeq:WP_014116915.1
COORDINATES: similar to AA sequence:RefSeq:WP_016320682.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004325706.1
COORDINATES: similar to AA sequence:RefSeq:WP_009532854.1
COORDINATES: similar to AA sequence:RefSeq:WP_007045690.1
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019161211.1
COORDINATES: similar to AA sequence:RefSeq:WP_015568823.1
COORDINATES: similar to AA sequence:RefSeq:WP_007047856.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014427.2
COORDINATES: similar to AA sequence:RefSeq:WP_015554572.1
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016321804.1
COORDINATES: similar to AA sequence:RefSeq:WP_016321803.1
GO:0004077 - biotin-[acetyl-CoA-carboxylase] ligase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009324531.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00168
Lysine riboswitch is most abundant in Firmicutes and Gammaproteobacteria where they are found upstream of a number of genes involved in lysine biosynthesis, transport and catabolism; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_006439379.1
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016321799.1
COORDINATES: protein motif:HMM:NF024060.2
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: similar to AA sequence:RefSeq:WP_006780239.1
COORDINATES: similar to AA sequence:RefSeq:WP_016148560.1
COORDINATES: similar to AA sequence:RefSeq:WP_009266087.1
COORDINATES: similar to AA sequence:RefSeq:WP_017299730.1
COORDINATES: similar to AA sequence:RefSeq:WP_004035736.1
COORDINATES: similar to AA sequence:RefSeq:WP_016147808.1
GO:0003908 - methylated-DNA-[protein]-cysteine S-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016320366.1
COORDINATES: similar to AA sequence:RefSeq:WP_004335601.1
GO:0004450 - isocitrate dehydrogenase (NADP+) activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
GO:0006102 - isocitrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004613671.1
COORDINATES: similar to AA sequence:RefSeq:WP_002569163.1
COORDINATES: similar to AA sequence:RefSeq:WP_002569164.1
COORDINATES: similar to AA sequence:RefSeq:WP_002569165.1
COORDINATES: similar to AA sequence:RefSeq:WP_008396275.1
COORDINATES: similar to AA sequence:RefSeq:WP_019161271.1
COORDINATES: protein motif:HMM:NF018897.2
COORDINATES: similar to AA sequence:RefSeq:WP_002593328.1
COORDINATES: similar to AA sequence:RefSeq:WP_015553292.1
COORDINATES: similar to AA sequence:RefSeq:WP_015559840.1
COORDINATES: similar to AA sequence:RefSeq:WP_015553294.1
COORDINATES: similar to AA sequence:RefSeq:WP_015524582.1
COORDINATES: similar to AA sequence:RefSeq:WP_007037036.1
COORDINATES: similar to AA sequence:RefSeq:WP_002569167.1
COORDINATES: similar to AA sequence:RefSeq:WP_016147847.1
COORDINATES: similar to AA sequence:RefSeq:WP_002595174.1
COORDINATES: similar to AA sequence:RefSeq:WP_004081269.1
COORDINATES: similar to AA sequence:RefSeq:WP_016289913.1
COORDINATES: similar to AA sequence:RefSeq:WP_002585097.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002585096.1
COORDINATES: similar to AA sequence:RefSeq:WP_002569175.1
COORDINATES: similar to AA sequence:RefSeq:WP_002585094.1
COORDINATES: similar to AA sequence:RefSeq:WP_002569177.1
COORDINATES: similar to AA sequence:RefSeq:WP_002569178.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]