Companilactobacillus pabuli strain NFFJ11 plasmid pLNT-1, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Companilactobacillus.
Complete Genome Sequence of Lactobacillus sp. NFFJ11 Isolated from animal feed
Submitted (27-FEB-2020) Microbial Research Department, Nakdonggang National Institute of Biological Resources, 137, Donam 2-Gil, Sangju, Gyeongsangbuk-Do 37242, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP049367.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. HGAP.3 (in SMRT Analysis v2.3.0)\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 360.66x\nSequencing Technology :: PacBio RSII; Illumina NovaSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/10/2023 03:21:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,437\nCDSs (total) :: 2,367\nGenes (coding) :: 2,351\nCDSs (with protein) :: 2,351\nGenes (RNA) :: 70\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 3\nPseudo Genes (total) :: 16\nCDSs (without protein) :: 16\nPseudo Genes (ambiguous residues) :: 0 of 16\nPseudo Genes (frameshifted) :: 8 of 16\nPseudo Genes (incomplete) :: 6 of 16\nPseudo Genes (internal stop) :: 6 of 16\nPseudo Genes (multiple problems) :: 4 of 16\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Companilactobacillus pabuli
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF021616.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016145.2
polysaccharide pyruvyl transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002828820.1
COORDINATES: similar to AA sequence:RefSeq:WP_053338758.1
GO:0004803 - transposase activity [Evidence IEA]
IS30-like element ISLpl1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_003645670.1
COORDINATES: similar to AA sequence:RefSeq:WP_003645671.1
COORDINATES: similar to AA sequence:RefSeq:WP_011102207.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014567995.1
COORDINATES: similar to AA sequence:RefSeq:WP_002825823.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010499758.1
COORDINATES: similar to AA sequence:RefSeq:WP_010018064.1
COORDINATES: similar to AA sequence:RefSeq:WP_010018065.1
GO:0015144 - carbohydrate transmembrane transporter activity [Evidence IEA]
alpha-glucoside-specific PTS transporter subunit IIBC
COORDINATES: similar to AA sequence:RefSeq:WP_010018067.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015826164.1
COORDINATES: similar to AA sequence:RefSeq:WP_013103563.1
COORDINATES: similar to AA sequence:RefSeq:WP_010018071.1
COORDINATES: similar to AA sequence:RefSeq:WP_014293804.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013085965.1
GO:0044423 - virion component [Evidence IEA]
GO:0016032 - viral process [Evidence IEA]; GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003568375.1
GlsB/YeaQ/YmgE family stress response membrane protein
COORDINATES: protein motif:HMM:NF025623.2
COORDINATES: similar to AA sequence:RefSeq:WP_010020897.1
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
Wzz/FepE/Etk N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003677334.1
CpsD/CapB family tyrosine-protein kinase
COORDINATES: similar to AA sequence:RefSeq:WP_002829826.1
COORDINATES: similar to AA sequence:RefSeq:WP_005917513.1
COORDINATES: protein motif:HMM:NF026018.2
polysaccharide biosynthesis C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015473998.1
COORDINATES: protein motif:HMM:NF036540.2
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003706882.1
COORDINATES: similar to AA sequence:RefSeq:WP_003676441.1
COORDINATES: similar to AA sequence:RefSeq:WP_050892470.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
ISL3-like element IS1165 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_003649837.1
COORDINATES: similar to AA sequence:RefSeq:WP_003649838.1
COORDINATES: similar to AA sequence:RefSeq:WP_016527414.1
COORDINATES: similar to AA sequence:RefSeq:WP_003691009.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014567980.1
COORDINATES: similar to AA sequence:RefSeq:WP_003603789.1
COORDINATES: similar to AA sequence:RefSeq:WP_013721072.1
COORDINATES: similar to AA sequence:RefSeq:WP_003603791.1
COORDINATES: similar to AA sequence:RefSeq:WP_008212308.1
COORDINATES: similar to AA sequence:RefSeq:WP_003680239.1
COORDINATES: similar to AA sequence:RefSeq:WP_016370337.1
CagC family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_014216295.1
COORDINATES: similar to AA sequence:RefSeq:WP_016381866.1
TrsD/TraD family conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_003680243.1
COORDINATES: similar to AA sequence:RefSeq:WP_016370339.1
COORDINATES: similar to AA sequence:RefSeq:WP_003680247.1
COORDINATES: similar to AA sequence:RefSeq:WP_012552815.1
COORDINATES: similar to AA sequence:RefSeq:WP_012552816.1
COORDINATES: similar to AA sequence:RefSeq:WP_003712734.1
COORDINATES: similar to AA sequence:RefSeq:WP_007745068.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003712731.1
COORDINATES: similar to AA sequence:RefSeq:WP_003712729.1
COORDINATES: similar to AA sequence:RefSeq:WP_002825295.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015474742.1
COORDINATES: protein motif:HMM:NF040212.1
COORDINATES: similar to AA sequence:RefSeq:WP_017650132.1
GO:0016740 - transferase activity [Evidence IEA]
PssD/Cps14F family polysaccharide biosynthesis glycosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_016366257.1
GO:0016758 - hexosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017515.2
COORDINATES: protein motif:HMM:NF012745.2