Corynebacterium qintianiae strain MC1420 plasmid unnamed, complete sequence.
type: Entry
definition: Corynebacterium qintianiae strain MC1420 plasmid unnamed, complete sequence.
sequence version: NZ_CP064956.1
sequence date: 2023-05-23
sequence: sequence
division: CON
label: NZ_CP064956.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN14086271
keyword: RefSeq
source: Corynebacterium qintianiae
organism: Corynebacterium qintianiae
taxonomy: Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium.
reference: 1
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP064956.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1566.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/22/2023 17:43:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,164\nCDSs (total) :: 2,098\nGenes (coding) :: 2,069\nCDSs (with protein) :: 2,069\nGenes (RNA) :: 66\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 3\nPseudo Genes (total) :: 29\nCDSs (without protein) :: 29\nPseudo Genes (ambiguous residues) :: 0 of 29\nPseudo Genes (frameshifted) :: 9 of 29\nPseudo Genes (incomplete) :: 18 of 29\nPseudo Genes (internal stop) :: 9 of 29\nPseudo Genes (multiple problems) :: 7 of 29\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 15795
topology: circular
so has quality: SO_0000988
location: 1..15795
location: region:1-15795:1
RO_0002162: 2709392

NZ_CP064956
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN14086271
type: BioSample
SIO_000068: biosample

1
title: Corynebacterium sp. MC1420
author: Zhou, J.
journal: Unpublished

2
title: Direct Submission
author: Zhou, J.
journal: Submitted (15-NOV-2020) National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, No.155 ChangBai Road, Changping District, beijing 102206, China

3
title: Direct Submission
author: Zhou, J.
journal: Submitted (13-FEB-2020) National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, No. 155 Changbai Road, Changping District, Beijing 102206, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15795:1
position: 15795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15795:1:source
so part of: sequence
organism: Corynebacterium qintianiae
mol type: genomic DNA
strain: MC1420
host: blue sheep
type material: type strain of Corynebacterium qintianiae
plasmid: unnamed
country: China
collection date: 2019-10-13

2709392
type: Taxonomy
SIO_000068: taxonomy

G7Y29_RS10670
type: Gene
subclass of: SO_0000704
RO_0002162: 2709392
locus tag: G7Y29_RS10670
old locus tag: G7Y29_10670
so part of: sequence
location: 256..840
location: region:256-840:1
so has part: feature:256-840:1:exon
subclass of: SO_0000010

position:256:1
position: 256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:840:1
position: 840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:256-840:1:exon

G7Y29_RS10670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2709392
locus tag: G7Y29_RS10670
old locus tag: G7Y29_10670
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770511.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MRISFVHTKGGVGKTTNSIMLAAAAQRRGIKVEVFDTDPQGSATRWAEVAEANGDPLDFPVEHLNAKQLLSRPTSDGWQIVDTPPGQASEIQAAIDTADLVIVPTHPAPLDIDRVWPTLKTVTHRMAGVLLIGVHERRLLYQDTRDIFEEQGVPTFYNFVPDREDIKNLFGTNPDNLYTFDDICTEILGIGEDD
SIO_010081: G7Y29_RS10670
subclass of: SO_0000673
so part of: G7Y29_RS10670
location: 256..840
location: region:256-840:1
so has part: feature:256-840:1:exon

WP_165005132.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:256-840:1:exon

G7Y29_RS10675
type: Gene
subclass of: SO_0000704
RO_0002162: 2709392
locus tag: G7Y29_RS10675
old locus tag: G7Y29_10675
so part of: sequence
location: 841..1083
location: region:841-1083:1
so has part: feature:841-1083:1:exon
subclass of: SO_0000010

position:841:1
position: 841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1083:1
position: 1083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:841-1083:1:exon

G7Y29_RS10675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2709392
locus tag: G7Y29_RS10675
old locus tag: G7Y29_10675
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAPKRPNRLASTLPQGTENRTPPKKVAETLRDANEPQLDRRTTIYLSSETWREAKIAALDEGTNISQIIEKLLKDYLTSK
SIO_010081: G7Y29_RS10675
subclass of: SO_0000673
so part of: G7Y29_RS10675
location: 841..1083
location: region:841-1083:1
so has part: feature:841-1083:1:exon

WP_165005134.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:841-1083:1:exon

G7Y29_RS10680
type: Gene
subclass of: SO_0000704
RO_0002162: 2709392
locus tag: G7Y29_RS10680
old locus tag: G7Y29_10680
so part of: sequence
location: 1326..2789
location: region:1326-2789:1
so has part: feature:1326-2789:1:exon
subclass of: SO_0000010

position:1326:1
position: 1326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2789:1
position: 2789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1326-2789:1:exon

G7Y29_RS10680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2709392
locus tag: G7Y29_RS10680
old locus tag: G7Y29_10680
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018022970.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MTLPHSEHGWAQPAPTSVDVAAFTREQLGGLEDTPAGATDRDALISHLGRDVLHVSRDRNFAKAYRRTKDGVTVPLMWRTDSEELGKFQYAMLTNKQYAAVLVVDIDQPGTQGGHPINLAEELRVKLFQLVSRGLGPAWVGINRLSGKAQCLWLIDPVYADESGKSPHMALLAATSRTLGGFLDHDPNFAHRFSRSPFYTGDSPDRYIWYRQHHRIDRLSDFIREVREVTDEPQHVSPRQEFSSGRELIETVKARREQAQAFRAIADEIEVEMGEETDRYNPDLIDGVLVRWIVPGRAARDETAFRHALKTAHRLRAAGERMTDAAIIDAYERAYNIAQREGADGRAVEMPPMRDRQTMARRVRGYVTQGKTDSYGTPTARYATTSQRKALATMGRRGGKKAAKRWETDPEGEYAQNELKKLQSANKRRRLRGQSTRARVLNVAMDTVAQTGKLPSGREIAEELGVTKRTVNLHLKALREAGLLEID
SIO_010081: G7Y29_RS10680
subclass of: SO_0000673
so part of: G7Y29_RS10680
location: 1326..2789
location: region:1326-2789:1
so has part: feature:1326-2789:1:exon

WP_165005136.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1326-2789:1:exon

G7Y29_RS10685
type: Gene
subclass of: SO_0000704
RO_0002162: 2709392
locus tag: G7Y29_RS10685
old locus tag: G7Y29_10685
so part of: sequence
location: 2958..3239
location: region:2958-3239:1
so has part: feature:2958-3239:1:exon
subclass of: SO_0000010

position:2958:1
position: 2958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3239:1
position: 3239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2958-3239:1:exon

G7Y29_RS10685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2709392
locus tag: G7Y29_RS10685
old locus tag: G7Y29_10685
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018016574.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix domain-containing protein
translation: MPVNITEKQLNAWVAEAEDGYNVDALKKRGRGRPGRGPEASQVVTVRLTPEELESLDRIAAEKHLSRSEMMRQAITALTAAEGGGIRHQARHQ
SIO_010081: G7Y29_RS10685
subclass of: SO_0000673
so part of: G7Y29_RS10685
location: 2958..3239
location: region:2958-3239:1
so has part: feature:2958-3239:1:exon

WP_165005112.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2958-3239:1:exon

G7Y29_RS10910
type: Gene
subclass of: SO_0000704
RO_0002162: 2709392
locus tag: G7Y29_RS10910
so part of: sequence
location: 3199..3441
location: region:3199-3441:1
so has part: feature:3199-3441:1:exon
subclass of: SO_0000010

position:3199:1
position: 3199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3441:1
position: 3441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3199-3441:1:exon

G7Y29_RS10910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2709392
locus tag: G7Y29_RS10910
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006839752.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: toxin
translation: MRVAASATKHGISEEDGIHAVSLPTWVALLDDDPAQWRELRLGFDTHARLLETVVVVASDGDELLIHAMKARSKYVDLLK
SIO_010081: G7Y29_RS10910
subclass of: SO_0000673
so part of: G7Y29_RS10910
location: 3199..3441
location: region:3199-3441:1
so has part: feature:3199-3441:1:exon

WP_165005140.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3199-3441:1:exon

G7Y29_RS10690
type: Gene
subclass of: SO_0000704
RO_0002162: 2709392
locus tag: G7Y29_RS10690
old locus tag: G7Y29_10690
so part of: sequence
location: complement(4110..4352)
location: region:4110-4352:-1
so has part: feature:4110-4352:-1:exon
subclass of: SO_0000010

position:4110:-1
position: 4110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4352:-1
position: 4352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4110-4352:-1:exon

G7Y29_RS10690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2709392
locus tag: G7Y29_RS10690
old locus tag: G7Y29_10690
inference: COORDINATES: protein motif:HMM:NF024788.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PLDc N-terminal domain-containing protein
translation: MYQPLCISLETAQLQHIWIVVAALAALLVAFWLAAVVSIVGSPISGGEKLLFILASLGFPFLGPLVWFVFIAGKYRHSAW
SIO_010081: G7Y29_RS10690
subclass of: SO_0000673
so part of: G7Y29_RS10690
location: complement(4110..4352)
location: region:4110-4352:-1
so has part: feature:4110-4352:-1:exon

WP_165005114.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4110-4352:-1:exon

G7Y29_RS10695
type: Gene
subclass of: SO_0000704
RO_0002162: 2709392
locus tag: G7Y29_RS10695
old locus tag: G7Y29_10695
so part of: sequence
location: complement(4413..5849)
location: region:4413-5849:-1
so has part: feature:4413-5849:-1:exon
subclass of: SO_0000010

position:4413:-1
position: 4413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5849:-1
position: 5849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4413-5849:-1:exon

G7Y29_RS10695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2709392
locus tag: G7Y29_RS10695
old locus tag: G7Y29_10695
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDTRGIGLRWISAASRLLVARLNTQRGELLLFGAGIVAAAVCSTILFTLAGGTWMFYRRYTNPTGLLEELSQDPFFHMVLAFYVGLASCACALVLPSVFTVAIAGAQLGARGREQRLAALRLLGLSSRDVTRMALLDTLLQAVVGVGVGFVVYRATLPLWSGLTFQAVPVRPGEMSLPWDWAGAVAVTLVAVNCLAAAWGLRRVRITPLGVARRTRGPRASLWRLAAFPAILLGCYVFVNTVRVEQNTSVLLVVAAVMVFFLIAVDLIGPWLLQLVTRPVARHAPGAALRLAARRIVNDPRATWRRASNIAVLAFIASSLACAPFSYDLAKNPTRTEQTFMDRAQPDLVSGGIIALGAGFFLTAAHLLITQASATIDRAHQSRALQRMGAPRTFALRTMWLETLLPLMGSATMGGLMGVALAWPMRQQLIASGMNVTGTPWYLLAVLLLGLAIAAGAVAASTPLHYQLLQNDRRSND
SIO_010081: G7Y29_RS10695
subclass of: SO_0000673
so part of: G7Y29_RS10695
location: complement(4413..5849)
location: region:4413-5849:-1
so has part: feature:4413-5849:-1:exon

WP_196820224.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4413-5849:-1:exon

G7Y29_RS10700
type: Gene
subclass of: SO_0000704
RO_0002162: 2709392
locus tag: G7Y29_RS10700
old locus tag: G7Y29_10700
so part of: sequence
location: complement(5861..6547)
location: region:5861-6547:-1
so has part: feature:5861-6547:-1:exon
subclass of: SO_0000010

position:5861:-1
position: 5861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6547:-1
position: 6547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5861-6547:-1:exon

G7Y29_RS10700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2709392
locus tag: G7Y29_RS10700
old locus tag: G7Y29_10700
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009760604.1
GO function: GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MNSLLSTHDITKAFGSVQALSGVSLTISEGETVAIMGPSGSGKSTLLHCLSGILDPDHGRVLFDGTDLAALDDHQRSHLRLRNFGFVFQDGQLLPELPARENVALPLTLMGTPHAEALRSADHRLEQLGLVEMRHRLPGEMSGGQAQRVAIARALTGDPKVIFADEPSGALDQSTGHEMMQVLTNSARIAGAALVVVTHDVSVARWCGRVVEIRDGLVHSDNVTEAGR
SIO_010081: G7Y29_RS10700
subclass of: SO_0000673
so part of: G7Y29_RS10700
location: complement(5861..6547)
location: region:5861-6547:-1
so has part: feature:5861-6547:-1:exon

WP_165005118.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5861-6547:-1:exon

G7Y29_RS10705
type: Gene
subclass of: SO_0000704
RO_0002162: 2709392
locus tag: G7Y29_RS10705
old locus tag: G7Y29_10705
so part of: sequence
location: 6656..7381
location: region:6656-7381:1
so has part: feature:6656-7381:1:exon
subclass of: SO_0000010

position:6656:1
position: 6656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7381:1
position: 7381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6656-7381:1:exon

G7Y29_RS10705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2709392
locus tag: G7Y29_RS10705
old locus tag: G7Y29_10705
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018117592.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
GO process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: histidine kinase
translation: MRRSAPRDSRAREQEAATRIAELTTARRQIVEAYEVERRRIERDLHDGSQQYLVAAAMKIGEAQLSEAIQYDLQASELIAEAKQDVLNALTSLRKTVRGIPPDALTHDGLENALRAVAANAPVSVTITCPHPLPRIPPAVLASAYFFATEAITNAVKHAPHASVNVLLTAGDSLRVSIVDDGPGGATLTPGHGLTGVRERLQAFGGDVTVTSPDGGPTHLIATIPLLLHRGESGINPTGTP
SIO_010081: G7Y29_RS10705
subclass of: SO_0000673
so part of: G7Y29_RS10705
location: 6656..7381
location: region:6656-7381:1
so has part: feature:6656-7381:1:exon

WP_165005120.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6656-7381:1:exon

G7Y29_RS10710
type: Gene
subclass of: SO_0000704
RO_0002162: 2709392
locus tag: G7Y29_RS10710
old locus tag: G7Y29_10710
so part of: sequence
location: 7378..8055
location: region:7378-8055:1
so has part: feature:7378-8055:1:exon
subclass of: SO_0000010

position:7378:1
position: 7378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8055:1
position: 8055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7378-8055:1:exon

G7Y29_RS10710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2709392
locus tag: G7Y29_RS10710
old locus tag: G7Y29_10710
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014847260.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: response regulator transcription factor
translation: MNLITVAIADDSALIREGLAAMLQRYGFVVVCQEGRADSLRQSIDHLAHQQQLPQLLITDVRMPPTMSNDGLVAALELRQRHPELSLVVLSQYILPTYAQQLFGTASASGTGYLLKDKISEVREFIHSLHVIADGGVVIDPEAAKAMVTTGRSRMAELTEREHEVLELMATGMSNNDIAQQLFISPAAVSKHVANIFAKLGLSPSQENRRVRAILRYLSEVRPWT
SIO_010081: G7Y29_RS10710
subclass of: SO_0000673
so part of: G7Y29_RS10710
location: 7378..8055
location: region:7378-8055:1
so has part: feature:7378-8055:1:exon

WP_283248428.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7378-8055:1:exon

G7Y29_RS10715
type: Gene
subclass of: SO_0000704
RO_0002162: 2709392
locus tag: G7Y29_RS10715
old locus tag: G7Y29_10715
so part of: sequence
location: complement(8156..8386)
location: region:8156-8386:-1
so has part: feature:8156-8386:-1:exon
subclass of: SO_0000010

position:8156:-1
position: 8156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8386:-1
position: 8386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8156-8386:-1:exon

G7Y29_RS10715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2709392
locus tag: G7Y29_RS10715
old locus tag: G7Y29_10715
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGRQQERVAARRAIYEAPVARLQQHRARESAVTDLVVPVQVKLCSGTEALADAEVHASALIEKRVPVHGLTAMQAA
SIO_010081: G7Y29_RS10715
subclass of: SO_0000673
so part of: G7Y29_RS10715
location: complement(8156..8386)
location: region:8156-8386:-1
so has part: feature:8156-8386:-1:exon

WP_165005122.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8156-8386:-1:exon

G7Y29_RS10915
type: Gene
subclass of: SO_0000704
RO_0002162: 2709392
locus tag: G7Y29_RS10915
old locus tag: G7Y29_10720
pseudo: true
so part of: sequence
location: <8478..8597
location: region:8478-8597:1
so has part: feature:8478-8597:1:exon
subclass of: SO_0000010

position:8478:1
position: 8478
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:8597:1
position: 8597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8478-8597:1:exon

G7Y29_RS10915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2709392
locus tag: G7Y29_RS10915
old locus tag: G7Y29_10720
inference: COORDINATES: protein motif:HMM:NF012422.2
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: LuxR C-terminal-related transcriptional regulator
SIO_010081: G7Y29_RS10915
subclass of: SO_0000673
so part of: G7Y29_RS10915
location: <8478..8597
location: region:8478-8597:1
so has part: feature:8478-8597:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8478-8597:1:exon

G7Y29_RS10725
type: Gene
subclass of: SO_0000704
RO_0002162: 2709392
locus tag: G7Y29_RS10725
old locus tag: G7Y29_10725
so part of: sequence
location: 8658..9284
location: region:8658-9284:1
so has part: feature:8658-9284:1:exon
subclass of: SO_0000010

position:8658:1
position: 8658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9284:1
position: 9284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8658-9284:1:exon

G7Y29_RS10725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2709392
locus tag: G7Y29_RS10725
old locus tag: G7Y29_10725
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006821861.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MSNGTEPSLPLEIDEHQDVVVGQKVGYARVSSMEQNLDRQLDQLRAAGASQIYKEKISGSTRHRPQLEEVLRYLRKGDQLIVTSMDRLARSLVDLHTIIEDLVGRGVSVRFLREGQTYSAKADPVAKLMLGLMGSVAEFERSIIKERQAEGIARAKARGVYKGRAKALTDAQVAQARGWVADGIPKAEVARRLSIGRTTLYKYLEKER
SIO_010081: G7Y29_RS10725
subclass of: SO_0000673
so part of: G7Y29_RS10725
location: 8658..9284
location: region:8658-9284:1
so has part: feature:8658-9284:1:exon

WP_165005124.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8658-9284:1:exon

G7Y29_RS10730
type: Gene
subclass of: SO_0000704
RO_0002162: 2709392
locus tag: G7Y29_RS10730
old locus tag: G7Y29_10730
so part of: sequence
location: 9646..10479
location: region:9646-10479:1
so has part: feature:9646-10479:1:exon
subclass of: SO_0000010

position:9646:1
position: 9646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10479:1
position: 10479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9646-10479:1:exon

G7Y29_RS10730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2709392
locus tag: G7Y29_RS10730
old locus tag: G7Y29_10730
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNFITANQAARQLADGFELQAGVRPSITASKVEVLVRTGVLENVNPSGNRILLSRDQVAEFLDNTTYVPDYEAFGIQDPIFRVSVVEQRSNPVYDLSGNLLREYSGFDYANRDGLSEEEQRGGFEGAWSISDENAEFLVETNGYLLPTTKGYVRADNIRRIVDYCLIEGSPRKFFHTEALDENDPFYADAATGFIIDVAPGRESGIDFDPVVEEDIDEDIEQEGITQEDVSDSEEGADLSLENLIELKMEQIRQLDELIARKEAEEEFKGQVEDDA
SIO_010081: G7Y29_RS10730
subclass of: SO_0000673
so part of: G7Y29_RS10730
location: 9646..10479
location: region:9646-10479:1
so has part: feature:9646-10479:1:exon

WP_165005126.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9646-10479:1:exon

G7Y29_RS10735
type: Gene
subclass of: SO_0000704
RO_0002162: 2709392
locus tag: G7Y29_RS10735
old locus tag: G7Y29_10735
so part of: sequence
location: complement(10780..11016)
location: region:10780-11016:-1
so has part: feature:10780-11016:-1:exon
subclass of: SO_0000010

position:10780:-1
position: 10780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11016:-1
position: 11016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10780-11016:-1:exon

G7Y29_RS10735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2709392
locus tag: G7Y29_RS10735
old locus tag: G7Y29_10735
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006822069.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: antitoxin
translation: MTRPISDIFRDIQLPRYTPEDTSLSSGERALARIISILAEEWDSLDGSQQRRLTNALETSTQETEKAEAPARALRRKA
SIO_010081: G7Y29_RS10735
subclass of: SO_0000673
so part of: G7Y29_RS10735
location: complement(10780..11016)
location: region:10780-11016:-1
so has part: feature:10780-11016:-1:exon

WP_165005128.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10780-11016:-1:exon

G7Y29_RS10740
type: Gene
subclass of: SO_0000704
RO_0002162: 2709392
locus tag: G7Y29_RS10740
old locus tag: G7Y29_10740
so part of: sequence
location: complement(11069..11371)
location: region:11069-11371:-1
so has part: feature:11069-11371:-1:exon
subclass of: SO_0000010

position:11069:-1
position: 11069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11371:-1
position: 11371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11069-11371:-1:exon

G7Y29_RS10740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2709392
locus tag: G7Y29_RS10740
old locus tag: G7Y29_10740
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018120351.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix protein, CopG family
translation: MATRKQHGWVGRGPVVSVRLEPELIDRLDTLAERTGRSRGTYLRMALWAALPSLERMHWEQVAADFEELAIKDAFEEITLGLMEDALKNDRRKRYDKDTA
SIO_010081: G7Y29_RS10740
subclass of: SO_0000673
so part of: G7Y29_RS10740
location: complement(11069..11371)
location: region:11069-11371:-1
so has part: feature:11069-11371:-1:exon

WP_196820223.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11069-11371:-1:exon

G7Y29_RS10745
type: Gene
subclass of: SO_0000704
RO_0002162: 2709392
gene: mobF
locus tag: G7Y29_RS10745
old locus tag: G7Y29_10745
so part of: sequence
location: 11878..15540
location: region:11878-15540:1
so has part: feature:11878-15540:1:exon
subclass of: SO_0000010

position:11878:1
position: 11878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15540:1
position: 15540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11878-15540:1:exon

G7Y29_RS10745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2709392
gene: mobF
locus tag: G7Y29_RS10745
old locus tag: G7Y29_10745
inference: COORDINATES: protein motif:HMM:NF041492.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobF family relaxase
translation: MMSFRAVHAGSGYQYLLRSVATNDAHDESIEEGTLSSYYQAKGTPPGRWIGRGLAALGSETAAVGVEIEADQMESLYGLGYHPDTHRMLWEGKRLDECKLGGKFPLYTNDIPVLNELRAAEREFVADSGRLPTEDERTGMAVSVGRRHYVEATGWVDAPDKDVVDWVNQQRSQVKQAVAGFDLTFSPAKSISVLWALADESTANKIAACHHEAVAEVLAWAEENTVRTRMGAGGLAQVKTGGIIASEFTHFDTRAGDPDLHSHVLVSNKVQGPDGKWRTLDSRAMFKNHQTLSARYDAILQEILTRKLGLGFTASPRGAGVEPVWEVAGVPEDLIEAFSKRRTMARPVYDTLVRDYVALHGHQPDKRTQKRLWQSAILDTRDGKKPAESLADLRESWRAGVEQMDGGAELLESVHAVIGGAHNDDRPEFFTQGAIDDDALDVHARGVVDRMIRKRSYFADHHVTAAVASYLKAFRFADGEETQRAIAQLSERIVSSHLIEITPWGAGNLPEKLRNDNGDAVDRHLDYRKYTTPEILAQEDKVLAAVVEPVPVFAESAAIDKAVAAFEKDNGFSLNSGQVELARHLLLSGTVAACGVGPAGTGKTTSMQIVARVWADHGHNVIGCAPSAAAASVLSEELGIEANTIDSLTFTWRGRNPDKPAGDLSALPVQINPGDMLLVDESGMATTDNLAALVEIAGAAGAIVRFVGDPHQLDAVGTGGLYATMCRYNKAAELTDVMRFSHGNDTEQADASLAVRRGDTAAAEFYFARGWVTGGTREAMLADAAEAYLADTAKGRSSLVVASTNADVSVLNEMIRAHHIDTGDVDTSREVALSQGDVAGLGDVIIARHNQRLDNPDRPNQAGEKVINGQLFRVIDLTDDGGIVAGDLATGQVYHLPADYVRAHTHLGYAATVHRSQGATVDTTHLVVDSATSRSALYVGLTRGRYENRVYAVTDDALDEFEEYGHEHSAGNSPGLTDKDVFMRAIARDTRQRSAADIRAEAEAYADSKERLAKLYRYGVDVATSDFIDRHLDAWWDRLDADAAAILTDEGRMKVRTAWRDLLAAGHDPRDFMATAVFNLGQVDEAGAVIAWRLRDTLANVAGEDPGLLAPPPVTRGADAELGAWLRETYDRLAHWPEDTADEDTAGEGIVPENLTPAERLRLQAGKALAAPAAGHRGKGAVADLDPLARLAAQRAGRAPAGTADQFPPREQASENTPEL
SIO_010081: G7Y29_RS10745
subclass of: SO_0000673
so part of: G7Y29_RS10745
location: 11878..15540
location: region:11878-15540:1
so has part: feature:11878-15540:1:exon

WP_165005130.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11878-15540:1:exon