Legionella antarctica strain TUM19329 plasmid pTUM19329-1.
Bacteria; Pseudomonadota; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.
Characterization of the First Cultured Psychrotolerant Representative of Legionella from Antarctica Reveals Its Unique Genome Structure
Complete Genome Sequence of Novel Psychrotolerant Legionella Strain TUM19329, Isolated from Antarctic Lake Sediment
Microbiol Resour Announc 9 (16), e00253-20 (2020)
DOI:10.1128/MRA.00253-20 Publication Status: Online-Only
Submitted (04-MAR-2020) Contact:Sho Shimada Toho University; 5-21-16 Omori-nishi, Ota-ku 143-8540, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP022840.1.\nAnnotated at DFAST https://dfast.nig.ac.jp/\n\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.0\nGenome Coverage :: 345x\nSequencing Technology :: illumina MiSeq; Nanopore MinIon\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/19/2023 17:48:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,715\nCDSs (total) :: 3,660\nGenes (coding) :: 3,541\nCDSs (with protein) :: 3,541\nGenes (RNA) :: 55\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 42\nncRNAs :: 4\nPseudo Genes (total) :: 119\nCDSs (without protein) :: 119\nPseudo Genes (ambiguous residues) :: 0 of 119\nPseudo Genes (frameshifted) :: 60 of 119\nPseudo Genes (incomplete) :: 70 of 119\nPseudo Genes (internal stop) :: 7 of 119\nPseudo Genes (multiple problems) :: 15 of 119\n##Genome-Annotation-Data-END##
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF020704.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015445040.1
COORDINATES: protein motif:HMM:NF019984.2
group II intron maturase-specific domain-containing protein
COORDINATES: protein motif:HMM:NF033527.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006871686.1
COORDINATES: similar to AA sequence:RefSeq:WP_012744604.1
COORDINATES: protein motif:HMM:NF014825.2
GO:0046872 - metal ion binding [Evidence IEA]
SEC-C metal-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_086558247.1
COORDINATES: similar to AA sequence:RefSeq:WP_001100279.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_006871897.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002769067.1
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_019963358.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: protein motif:HMM:NF013094.2
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: similar to AA sequence:RefSeq:WP_016914289.1
COORDINATES: protein motif:HMM:NF033546.1
COORDINATES: protein motif:HMM:NF013828.2
COORDINATES: protein motif:HMM:NF013676.2
COORDINATES: similar to AA sequence:RefSeq:WP_020853122.1
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_011114071.1
type II toxin-antitoxin system YafQ family toxin
COORDINATES: protein motif:HMM:NF024106.2
COORDINATES: protein motif:HMM:NF025001.2
COORDINATES: similar to AA sequence:RefSeq:WP_013032751.1
COORDINATES: similar to AA sequence:RefSeq:WP_014842360.1
COORDINATES: protein motif:HMM:NF025079.2
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014841806.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_015444683.1
COORDINATES: protein motif:HMM:NF027544.2
COORDINATES: similar to AA sequence:RefSeq:WP_003637183.1
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006871705.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006871706.1
ribbon-helix-helix domain-containing protein
COORDINATES: protein motif:HMM:NF033538.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_006871708.1
COORDINATES: similar to AA sequence:RefSeq:WP_014844323.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: protein motif:HMM:NF016876.2
COORDINATES: protein motif:HMM:NF024547.2
COORDINATES: similar to AA sequence:RefSeq:WP_010947781.1
MazG nucleotide pyrophosphohydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011212518.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655360.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655359.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212515.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655350.1
COORDINATES: similar to AA sequence:RefSeq:WP_002708456.1
COORDINATES: similar to AA sequence:RefSeq:WP_018280877.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014845131.1
COORDINATES: protein motif:HMM:NF014633.2
COORDINATES: similar to AA sequence:RefSeq:WP_014845132.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845133.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845134.1
conjugative transfer relaxase/helicase TraI
COORDINATES: similar to AA sequence:RefSeq:WP_014845135.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_014845136.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845137.1
conjugal transfer mating-pair stabilization protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_014845138.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845139.1
type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
COORDINATES: similar to AA sequence:RefSeq:WP_014845140.1
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: similar to AA sequence:RefSeq:WP_010655336.1
type-F conjugative transfer system mating-pair stabilization protein TraN
COORDINATES: similar to AA sequence:RefSeq:WP_014845142.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_005322002.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_014845144.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_014845145.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845146.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845147.1
type IV conjugative transfer system protein TraV
COORDINATES: similar to AA sequence:RefSeq:WP_014845148.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845149.1
type-F conjugative transfer system secretin TraK
COORDINATES: protein motif:HMM:NF017152.2
type IV conjugative transfer system protein TraE
COORDINATES: protein motif:HMM:TIGR02762.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_019235609.1
GO:0005576 - extracellular region [Evidence IEA]
type IV conjugative transfer system pilin TraA
COORDINATES: similar to AA sequence:RefSeq:WP_010655323.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845154.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845155.1
COORDINATES: protein motif:HMM:NF014638.2
COORDINATES: protein motif:HMM:NF022188.2
Rossmann-like and DUF2520 domain-containing protein
COORDINATES: protein motif:HMM:NF014631.2
COORDINATES: protein motif:HMM:NF012920.2
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004152392.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015497729.1
COORDINATES: similar to AA sequence:RefSeq:WP_007509002.1
COORDINATES: similar to AA sequence:RefSeq:WP_010304095.1
COORDINATES: protein motif:HMM:NF013939.2
GO:0046417 - chorismate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018575853.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006770492.1
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: protein motif:HMM:NF033517.1
COORDINATES: protein motif:HMM:NF012403.2
COORDINATES: protein motif:HMM:NF001464.0
COORDINATES: similar to AA sequence:RefSeq:WP_005771486.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004450534.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655443.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845120.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010655390.1
COORDINATES: similar to AA sequence:RefSeq:WP_004073218.1