Synchiropus splendidus mitochondrion, complete genome.
type: Entry
definition: Synchiropus splendidus mitochondrion, complete genome.
sequence version: NC_024195.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_024195.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Synchiropus splendidus (mandarinfish)
organism: Synchiropus splendidus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Callionymoidei; Callionymidae; Synchiropus.
reference: 1
references: 24680775
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence is identical to AP012317.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16430
topology: circular
so has quality: SO_0000988
location: 1..16430
location: region:1-16430:1
RO_0002162: 270530

NC_024195
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Mitogenomic circumscription of a novel percomorph fish clade mainly comprising 'Syngnathoidei' (Teleostei)
author: Song, H.Y.
author: Mabuchi, K.
author: Satoh, T.P.
author: Moore, J.A.
author: Yamanoue, Y.
author: Miya, M.
author: Nishida, M.
journal: Gene
volume: 542
issue: 2
pages: 146-155
year: 2014
pubmed: 24680775

24680775
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (29-MAY-2014) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Song, H.Y.
author: Mabuchi, K.
journal: Submitted (14-FEB-2012) The University of Tokyo, Atmosphere and Ocean Research Institute; Kashiwanoha 5-1-5, Kashiwa, Chiba 277-8564, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16430:1
position: 16430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16430:1:source
so part of: sequence
organism: Synchiropus splendidus
organelle: mitochondrion
mol type: genomic DNA

270530
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 270530
product: tRNA-Phe
anticodon: (pos:31..33,aa:Phe,seq:gaa)
so part of: sequence
location: 1..68
location: region:1-68:1
so has part: feature:1-68:1:region

position:68:1
position: 68
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-68:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 270530
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 69..1014
location: region:69-1014:1
so has part: feature:69-1014:1:region

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1014:1
position: 1014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69-1014:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 270530
product: tRNA-Val
anticodon: (pos:1047..1049,aa:Val,seq:tac)
so part of: sequence
location: 1015..1085
location: region:1015-1085:1
so has part: feature:1015-1085:1:region

position:1015:1
position: 1015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1085:1
position: 1085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1015-1085:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 270530
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 1086..2759
location: region:1086-2759:1
so has part: feature:1086-2759:1:region

position:1086:1
position: 1086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2759:1
position: 2759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1086-2759:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 270530
product: tRNA-Leu
anticodon: (pos:2794..2796,aa:Leu,seq:taa)
so part of: sequence
location: 2760..2832
location: region:2760-2832:1
so has part: feature:2760-2832:1:region

position:2760:1
position: 2760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2832:1
position: 2832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2760-2832:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 270530
gene: ND1
so part of: sequence
location: 2833..3804
location: region:2833-3804:1
so has part: feature:2833-3804:1:exon
subclass of: SO_0000010

19524489
type: Gene
SIO_000068: ncbigene

position:2833:1
position: 2833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3804:1
position: 3804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2833-3804:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 270530
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MLSALMIYLINPLALIVPVLLAVAFLTLIERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSNSILFLAAPMLSLTLALTLWAPMPLPHATADISLSILFILALSSLTVYSILGSGWASNSKYALMGALRAIAQTISYEVSLGLIILGGVIFTGAFTLQIFSTTQEAVWLMLPAWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAVLFLGAYHIPTFPEMMSLNLMMKAVFLSILFLWXRASYPRFRYDQLMHLIWKNFLPLTLAFVIWHLAMPITFGGLPPQ
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2833..3804
location: region:2833-3804:1
so has part: feature:2833-3804:1:exon

YP_009034479.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2833-3804:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 270530
product: tRNA-Ile
anticodon: (pos:3839..3841,aa:Ile,seq:gat)
so part of: sequence
location: 3808..3878
location: region:3808-3878:1
so has part: feature:3808-3878:1:region

position:3808:1
position: 3808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3878:1
position: 3878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3808-3878:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 270530
product: tRNA-Gln
anticodon: (pos:complement(3914..3916),aa:Gln,seq:ttg)
so part of: sequence
location: complement(3878..3948)
location: region:3878-3948:-1
so has part: feature:3878-3948:-1:region

position:3878:-1
position: 3878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3948:-1
position: 3948
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3878-3948:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 270530
product: tRNA-Met
anticodon: (pos:3978..3980,aa:Met,seq:cat)
so part of: sequence
location: 3948..4017
location: region:3948-4017:1
so has part: feature:3948-4017:1:region

position:3948:1
position: 3948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4017:1
position: 4017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3948-4017:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 270530
gene: ND2
so part of: sequence
location: 4018..5063
location: region:4018-5063:1
so has part: feature:4018-5063:1:exon
subclass of: SO_0000010

19524495
type: Gene
SIO_000068: ncbigene

position:4018:1
position: 4018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5063:1
position: 5063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4018-5063:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 270530
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5062..5063,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MTPFILPVMAFSLLLGTLITVTSSNWLLAWMGIEINTLAIIPLMIHNHHPRATEATTKYFIVQAAAAAMILFSAVVKAWTTGEWIINPFSEPLSTSLLILALALKLGLAPLHSWLPDVLQGLDFNTGMILSTWQKIAPMTLLLQAGKTEMPLMLALGILSVLMGGLGGLNQVQTRKIMAYSSIAHLGWMTAALPLAPHLTLMALTLYILTTYCMFSILLLTGGKTINTLAISWAKNNAILVSTPILLFSLGGLPPTLGFVPKWFILKELTAHNLTIVALMIAMFSLLSLYFYIRLSYALTLTKAPNAVTGMPMWRLQLKSQDALLMAVVVLVLIFLPASPAALALFLT
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4018..5063
location: region:4018-5063:1
so has part: feature:4018-5063:1:exon

YP_009034480.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4018-5063:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 270530
product: tRNA-Trp
anticodon: (pos:5096..5098,aa:Trp,seq:tca)
so part of: sequence
location: 5064..5134
location: region:5064-5134:1
so has part: feature:5064-5134:1:region

position:5064:1
position: 5064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5134:1
position: 5134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5064-5134:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 270530
product: tRNA-Ala
anticodon: (pos:complement(5171..5173),aa:Ala,seq:tgc)
so part of: sequence
location: complement(5135..5203)
location: region:5135-5203:-1
so has part: feature:5135-5203:-1:region

position:5135:-1
position: 5135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5203:-1
position: 5203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5135-5203:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 270530
product: tRNA-Asn
anticodon: (pos:complement(5242..5244),aa:Asn,seq:gtt)
so part of: sequence
location: complement(5205..5277)
location: region:5205-5277:-1
so has part: feature:5205-5277:-1:region

position:5205:-1
position: 5205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5277:-1
position: 5277
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5205-5277:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 270530
product: tRNA-Cys
anticodon: (pos:complement(5347..5349),aa:Cys,seq:gca)
so part of: sequence
location: complement(5312..5375)
location: region:5312-5375:-1
so has part: feature:5312-5375:-1:region

position:5312:-1
position: 5312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5375:-1
position: 5375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5312-5375:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 270530
product: tRNA-Tyr
anticodon: (pos:complement(5412..5414),aa:Tyr,seq:gta)
so part of: sequence
location: complement(5376..5442)
location: region:5376-5442:-1
so has part: feature:5376-5442:-1:region

position:5376:-1
position: 5376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5442:-1
position: 5442
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5376-5442:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 270530
alternative label: COI
gene: COX1
gene synonym: COI
so part of: sequence
location: 5444..6988
location: region:5444-6988:1
so has part: feature:5444-6988:1:exon
subclass of: SO_0000010

19524496
type: Gene
SIO_000068: ncbigene

position:5444:1
position: 5444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6988:1
position: 6988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5444-6988:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 270530
alternative label: COI
gene: COX1
gene synonym: COI
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MTVTRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELNQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPMMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLSSNLAHAGASVDLTIFSLHLAGISSILGAINFITTITNMKPPALTQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYAGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGAIKWETPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLHDLWTKIHFGVMFVGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTISSIGSLVSLVAVIMFLFIIWEAFAAKREVQSVELTSTNVEWLYGCPPPYHTFEEPAFVQVQ
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5444..6988
location: region:5444-6988:1
so has part: feature:5444-6988:1:exon

YP_009034481.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5444-6988:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 270530
product: tRNA-Ser
anticodon: (pos:complement(7032..7034),aa:Ser,seq:tga)
so part of: sequence
location: complement(6996..7066)
location: region:6996-7066:-1
so has part: feature:6996-7066:-1:region

position:6996:-1
position: 6996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7066:-1
position: 7066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6996-7066:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 270530
product: tRNA-Asp
anticodon: (pos:7099..7101,aa:Asp,seq:gtc)
so part of: sequence
location: 7070..7137
location: region:7070-7137:1
so has part: feature:7070-7137:1:region

position:7070:1
position: 7070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7137:1
position: 7137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7070-7137:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 270530
alternative label: COII
gene: COX2
gene synonym: COII
so part of: sequence
location: 7140..7829
location: region:7140-7829:1
so has part: feature:7140-7829:1:exon
subclass of: SO_0000010

19524492
type: Gene
SIO_000068: ncbigene

position:7140:1
position: 7140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7829:1
position: 7829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7140-7829:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 270530
alternative label: COII
gene: COX2
gene synonym: COII
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPSQLGFQDAASPVMEELLHFHDHALMIVFLISAFVLYIIVAMVMTKLTDKFILDSQEVEIIWTVLPAVILILIAMPSLRILYLMDEVNDPHLTIKAVGHQWYWSYEYTDYNELCFDSYMIPTQDLTPGQFRLLEVDHRVVLPVESPVRVLVSAEDVLHSWAVPSLGVKMDAVPGRLNQTALIAAHPGVFYGQCSEICGANHSFMPIVVEAVPLEHFENWSLLMLDL
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7140..7829
location: region:7140-7829:1
so has part: feature:7140-7829:1:exon

YP_009034482.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7140-7829:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 270530
product: tRNA-Lys
anticodon: (pos:7866..7868,aa:Lys,seq:ttt)
so part of: sequence
location: 7831..7905
location: region:7831-7905:1
so has part: feature:7831-7905:1:region

position:7831:1
position: 7831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7905:1
position: 7905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7831-7905:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 270530
gene: ATP8
so part of: sequence
location: 7907..8071
location: region:7907-8071:1
so has part: feature:7907-8071:1:exon
subclass of: SO_0000010

19524493
type: Gene
SIO_000068: ncbigene

position:7907:1
position: 7907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8071:1
position: 8071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7907-8071:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 270530
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPSPWFMILIFSWLVFLAFLPTKIMSHTYPNKLTPETKEASSNNPWTWPW
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7907..8071
location: region:7907-8071:1
so has part: feature:7907-8071:1:exon

YP_009034483.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7907-8071:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 270530
gene: ATP6
so part of: sequence
location: 8065..8747
location: region:8065-8747:1
so has part: feature:8065-8747:1:exon
subclass of: SO_0000010

19524491
type: Gene
SIO_000068: ncbigene

position:8065:1
position: 8065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8747:1
position: 8747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8065-8747:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 270530
gene: ATP6
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:8746..8747,aa:TERM)
transl table: 2
product: ATP synthase F0 subunit 6
translation: MMASFFDQFASPSFAGVPLIAIALTFPWILFPSASSKWLSNRVETLQNWFIGRFTNQLLLPLNQEAHKWALLYASLMIFLISLNMLGLLPYTFTPTTQLSLNMGLAVPFWLATVIIGLRNRPTHALGHLLPEGTPTPLIPMLIIIETISLFIRPIALGVRLTANLTAGHLLIQLIGTATFVLFPMMTTVSILTGLVLFLLTMLEVAVAMIQAYVFVLLLSLYLQENV
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8065..8747
location: region:8065-8747:1
so has part: feature:8065-8747:1:exon

YP_009034484.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8065-8747:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 270530
alternative label: COIII
gene: COX3
gene synonym: COIII
so part of: sequence
location: 8748..9532
location: region:8748-9532:1
so has part: feature:8748-9532:1:exon
subclass of: SO_0000010

19524490
type: Gene
SIO_000068: ncbigene

position:8748:1
position: 8748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9532:1
position: 9532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8748-9532:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 270530
alternative label: COIII
gene: COX3
gene synonym: COIII
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9531..9532,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHAYHMVNPSPWPLTGAIAALLMTAGLAIWFHFHLTTLMNLGLILLLLTMYQWWRDIVREGTFQGHHTPPVQKGLRCGMALFITSEVFFFLGFFWAFYHSSLAPTPDLGGCWPPTGISPIDPFGVPLLNTAVLLASGATITWCHHSIIEGGRSPAIQALALTILLGVYFTFLQAMEYYEAPFTIADGVYGSTFFVTTGFHGLHVIIGSTFLAVCLIRLIQFHFTSEHHFGLEAAAWYWHFVDVVWLLLYVSLYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8748..9532
location: region:8748-9532:1
so has part: feature:8748-9532:1:exon

YP_009034485.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8748-9532:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 270530
product: tRNA-Gly
anticodon: (pos:9563..9565,aa:Gly,seq:tcc)
so part of: sequence
location: 9533..9601
location: region:9533-9601:1
so has part: feature:9533-9601:1:region

position:9533:1
position: 9533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9601:1
position: 9601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9533-9601:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 270530
gene: ND3
so part of: sequence
location: 9602..9950
location: region:9602-9950:1
so has part: feature:9602-9950:1:exon
subclass of: SO_0000010

19524494
type: Gene
SIO_000068: ncbigene

position:9602:1
position: 9602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9950:1
position: 9950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9602-9950:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 270530
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9950,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNIIMAVMTISAALAMVLALVSFYLPQMTPDSEKLSPYECGFDPLGSARLPFSLRFFLIAILFLLFDLEIALLLPLPWADQLSSPSLTFTWATLVLIMLTAGLIYEWLQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9602..9950
location: region:9602-9950:1
so has part: feature:9602-9950:1:exon

YP_009034486.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9602-9950:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 270530
product: tRNA-Arg
anticodon: (pos:9982..9984,aa:Arg,seq:tcg)
so part of: sequence
location: 9951..10020
location: region:9951-10020:1
so has part: feature:9951-10020:1:region

position:9951:1
position: 9951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10020:1
position: 10020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9951-10020:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 270530
gene: ND4L
so part of: sequence
location: 10021..10317
location: region:10021-10317:1
so has part: feature:10021-10317:1:exon
subclass of: SO_0000010

19524497
type: Gene
SIO_000068: ncbigene

position:10021:1
position: 10021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10317:1
position: 10317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10021-10317:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 270530
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTLTNFSFFSAFILGLAGLSFNRTHLLSALLCLEGMMLSLYLSFSLWALTLGATNFSSAPMFLLTFSACEASTGLALLVATARTHGSDHLKALNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10021..10317
location: region:10021-10317:1
so has part: feature:10021-10317:1:exon

YP_009034487.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10021-10317:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 270530
gene: ND4
so part of: sequence
location: 10311..11684
location: region:10311-11684:1
so has part: feature:10311-11684:1:exon
subclass of: SO_0000010

19524499
type: Gene
SIO_000068: ncbigene

position:10311:1
position: 10311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11684:1
position: 11684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10311-11684:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 270530
gene: ND4
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKILIPTLVMIPTAWLTPNKWLWPSALCQSLIIALFSLSWLKNTGQPGWNFINMSMATDNLSTPLLVLTCWLLPLMILASQNHTSTNPMNQQRMYISLLVSLQFFLILAFSATELIMFYVMFEATLLPTLAIITRWGNQKDRLNAGSYFLFYTLAGSLPLLIALLYLQSSMGTLSLISLQLTPSSNIFSYSNKLWWLACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAVLLKLGGYGMMRVLPLLNPLTSSLNYPFIILALWGVIMTASICLRQTDLKSLIAYSSVSHMGLVAAGILTQTSCGFSGAMALMIAHGLTSSALFCLANTNYERTHSRTMILARGLQVVLPLMTTWWFIATLANFALPPLPNLMGELLIMTCLFGWSSWTLIFTGLGTLITAAYSLYMFLMTQRGQTPAHIILPDPSFTREHLLMALHLLPLLLLILNPALILS
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10311..11684
location: region:10311-11684:1
so has part: feature:10311-11684:1:exon

YP_009034488.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10311-11684:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 270530
product: tRNA-His
anticodon: (pos:11717..11719,aa:His,seq:gtg)
so part of: sequence
location: 11686..11755
location: region:11686-11755:1
so has part: feature:11686-11755:1:region

position:11686:1
position: 11686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11755:1
position: 11755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11686-11755:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 270530
product: tRNA-Ser
anticodon: (pos:11784..11786,aa:Ser,seq:gct)
so part of: sequence
location: 11756..11824
location: region:11756-11824:1
so has part: feature:11756-11824:1:region

position:11756:1
position: 11756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11824:1
position: 11824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11756-11824:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 270530
product: tRNA-Leu
anticodon: (pos:11858..11860,aa:Leu,seq:tag)
so part of: sequence
location: 11825..11897
location: region:11825-11897:1
so has part: feature:11825-11897:1:region

position:11825:1
position: 11825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11897:1
position: 11897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11825-11897:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 270530
gene: ND5
so part of: sequence
location: 11901..13739
location: region:11901-13739:1
so has part: feature:11901-13739:1:exon
subclass of: SO_0000010

19524498
type: Gene
SIO_000068: ncbigene

position:11901:1
position: 11901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13739:1
position: 13739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11901-13739:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 270530
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MHYASEIMTSSLLIMLIMLCSPLIWPAPLNKLLTKNHPAKVKTAVKLAFFVSLLPLALFLNTGLETLTYTWHWTDFSYLSLSLSFKFDLYTIIFTPIALYVTWSIMEFTSWYMASDPLIDRFSNFLLLFLVAMLVLVTANNMFQLFIGWEGVGIMSFLLIGWWQGRTDANTAALQAVIYNRVGDIGFILVLIWSALKVNSWEMDQIFILSKNYNTTIPAIGLILAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRMNPIIAQNANALTACLWLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSAIHSLNDEQDIRKMGGMFYLTPFTASCINLGSLALAGFPFLAGFFSKDAIIEAMNTSFLNTCALILTLIATSFTAAYSIRLIYLVSLNTTRIAPLSPIDETPTEVINPIKRLAWGSILAGLIITSNMLPNKTPIMVMTPMMKMSALIVTIMGLLIALQLATNANQHLSPSPKMTPYRFSSMLGFFPSIFHRLTPKMNLAFAHKIATQTLDLSWTETLGPKGLSLKTTHLASWVSNIQKGLIKSYMMFFILAITCAFMYALI
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11901..13739
location: region:11901-13739:1
so has part: feature:11901-13739:1:exon

YP_009034489.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11901-13739:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 270530
gene: ND6
so part of: sequence
location: complement(13736..14254)
location: region:13736-14254:-1
so has part: feature:13736-14254:-1:exon
subclass of: SO_0000010

19524500
type: Gene
SIO_000068: ncbigene

position:13736:-1
position: 13736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14254:-1
position: 14254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13736-14254:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 270530
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MIIIITLCCISIILGLVLVASHPSPYFAALGLVLVAGTGCGFLMVEGGSFLALILFLIYLGGMLVVFAYSAALAAEPYPEAWMSRSVFFNMCVYLGLVGGAFFMLSGEFTVCWGGSDVSSGAEIIRGDMGGVALMYSWGGGMLVTSAWVLLLTLLVVLELTRGMSRGVLRAV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13736..14254)
location: region:13736-14254:-1
so has part: feature:13736-14254:-1:exon

YP_009034490.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13736-14254:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 270530
product: tRNA-Glu
anticodon: (pos:complement(14291..14293),aa:Glu,seq:ttc)
so part of: sequence
location: complement(14255..14322)
location: region:14255-14322:-1
so has part: feature:14255-14322:-1:region

position:14255:-1
position: 14255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14322:-1
position: 14322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14255-14322:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 270530
gene: CYTB
so part of: sequence
location: 14327..15467
location: region:14327-15467:1
so has part: feature:14327-15467:1:exon
subclass of: SO_0000010

19524501
type: Gene
SIO_000068: ncbigene

position:14327:1
position: 14327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15467:1
position: 15467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14327-15467:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 270530
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15467,aa:TERM)
transl table: 2
product: cytochrome b
translation: MASLRKSHPLLKIANNAVVDLPAPSNISVWWNFGSLLGLCLISQLATGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYMHIGRGLYYGSYLYKITWNVGVVLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGSVVQWIWGGFSVDNATLTRFFAFHFLLPFIIAAVTMIHLLFLHETGSNNPAGLNSDSDKISFHPYFSYKDLIGFVVMLVALTSLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQRGLTYRPMTQFLFWTLIADVLILTWIGGMPVEDPFIIIGQVASVLYFTIFLILMPTAGYIENKALNWA
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14327..15467
location: region:14327-15467:1
so has part: feature:14327-15467:1:exon

YP_009034491.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14327-15467:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 270530
product: tRNA-Thr
anticodon: (pos:15499..15501,aa:Thr,seq:tgt)
so part of: sequence
location: 15468..15538
location: region:15468-15538:1
so has part: feature:15468-15538:1:region

position:15468:1
position: 15468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15538:1
position: 15538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15468-15538:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 270530
product: tRNA-Pro
anticodon: (pos:complement(15574..15576),aa:Pro,seq:tgg)
so part of: sequence
location: complement(15538..15606)
location: region:15538-15606:-1
so has part: feature:15538-15606:-1:region

position:15538:-1
position: 15538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15606:-1
position: 15606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15538-15606:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 270530
note: control region
so part of: sequence
location: 15607..16430
location: region:15607-16430:1
so has part: feature:15607-16430:1:region

position:15607:1
position: 15607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15607-16430:1:region