Paenibacillus rhizovicinus strain 14171R-81 plasmid unnamed1, complete sequence.
Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.
Paenibacillus sp. nov., isolated from rhizosphere soil of tomato
Submitted (02-FEB-2020) Agricultural Microbiology Division, National Institute of Agricultural Sciences, 166, Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP048287.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 122.36x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/24/2022 03:27:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 6,801\nCDSs (total) :: 6,632\nGenes (coding) :: 6,561\nCDSs (with protein) :: 6,561\nGenes (RNA) :: 169\nrRNAs :: 13, 13, 13 (5S, 16S, 23S)\ncomplete rRNAs :: 13, 13, 13 (5S, 16S, 23S)\ntRNAs :: 125\nncRNAs :: 5\nPseudo Genes (total) :: 71\nCDSs (without protein) :: 71\nPseudo Genes (ambiguous residues) :: 0 of 71\nPseudo Genes (frameshifted) :: 19 of 71\nPseudo Genes (incomplete) :: 51 of 71\nPseudo Genes (internal stop) :: 5 of 71\nPseudo Genes (multiple problems) :: 4 of 71\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Paenibacillus rhizovicinus
COORDINATES: protein motif:HMM:NF024758.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014950.2
COORDINATES: similar to AA sequence:RefSeq:WP_017691020.1
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010631632.1
COORDINATES: similar to AA sequence:RefSeq:WP_005832060.1
COORDINATES: protein motif:HMM:NF024515.2
COORDINATES: protein motif:HMM:NF012787.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014652135.1
sulfite exporter TauE/SafE family protein
COORDINATES: protein motif:HMM:NF024834.2
COORDINATES: similar to AA sequence:RefSeq:WP_013057945.1
COORDINATES: protein motif:HMM:NF020123.2
GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009672708.1
COORDINATES: similar to AA sequence:RefSeq:WP_009672898.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF017394.2
nitrous oxide reductase accessory protein NosL
COORDINATES: protein motif:HMM:NF016906.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: protein motif:HMM:NF012491.2
small, acid-soluble spore protein, alpha/beta type
COORDINATES: protein motif:HMM:NF017832.2
COORDINATES: similar to AA sequence:RefSeq:WP_014281001.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025388.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014600116.1
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: protein motif:HMM:NF013632.2
COORDINATES: similar to AA sequence:RefSeq:WP_009336453.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: protein motif:HMM:NF019450.2
copper amine oxidase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: similar to AA sequence:RefSeq:WP_015256736.1
COORDINATES: similar to AA sequence:RefSeq:WP_015256735.1
COORDINATES: similar to AA sequence:RefSeq:WP_015256773.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01051
cyclic di-GMP riboswitch class I; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF016296.2
LytTR family transcriptional regulator DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015256732.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611148.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015256731.1
TraM recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015256728.1
COORDINATES: similar to AA sequence:RefSeq:WP_015256727.1
COORDINATES: protein motif:HMM:NF024056.2
COORDINATES: similar to AA sequence:RefSeq:WP_015256722.1
TcpE family conjugal transfer membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_015256721.1
COORDINATES: protein motif:HMM:NF013954.2
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: protein motif:HMM:NF024685.2
COORDINATES: protein motif:HMM:NF025442.2
COORDINATES: similar to AA sequence:RefSeq:WP_015256714.1
COORDINATES: similar to AA sequence:RefSeq:WP_015256713.1
COORDINATES: similar to AA sequence:RefSeq:WP_015256711.1
COORDINATES: similar to AA sequence:RefSeq:WP_015256710.1
COORDINATES: protein motif:HMM:NF024867.2
COORDINATES: similar to AA sequence:RefSeq:WP_006037522.1
COORDINATES: protein motif:HMM:NF019348.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021352.2
COORDINATES: similar to AA sequence:RefSeq:WP_013914872.1
COORDINATES: similar to AA sequence:RefSeq:WP_003345051.1
COORDINATES: similar to AA sequence:RefSeq:WP_006037010.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007786940.1
COORDINATES: similar to AA sequence:RefSeq:WP_013916967.1
COORDINATES: protein motif:HMM:TIGR00797.1
COORDINATES: similar to AA sequence:RefSeq:WP_015735585.1
COORDINATES: similar to AA sequence:RefSeq:WP_015256696.1
COORDINATES: protein motif:HMM:NF012372.2
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: similar to AA sequence:RefSeq:WP_015256689.1
GO:0003824 - catalytic activity [Evidence IEA]
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: protein motif:HMM:NF037909.2
COORDINATES: protein motif:HMM:NF020945.2
aspartyl-phosphate phosphatase Spo0E family protein
COORDINATES: protein motif:HMM:NF023069.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015256828.1
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF024295.2
COORDINATES: protein motif:HMM:NF014763.2
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_009592238.1
COORDINATES: similar to AA sequence:RefSeq:WP_009592242.1
COORDINATES: similar to AA sequence:RefSeq:WP_009592230.1
COORDINATES: protein motif:HMM:NF014893.2
COORDINATES: protein motif:HMM:NF013429.2
COORDINATES: similar to AA sequence:RefSeq:WP_015846195.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013697.2
COORDINATES: protein motif:HMM:NF024808.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF020039.2
SMP-30/gluconolactonase/LRE family protein
COORDINATES: protein motif:HMM:NF028498.2
COORDINATES: similar to AA sequence:RefSeq:WP_009673152.1
COORDINATES: protein motif:HMM:NF017502.2
COORDINATES: protein motif:HMM:NF028442.2
COORDINATES: protein motif:HMM:NF016668.2
COORDINATES: similar to AA sequence:RefSeq:WP_014369362.1
COORDINATES: similar to AA sequence:RefSeq:WP_019914193.1
COORDINATES: protein motif:HMM:NF014156.2
COORDINATES: similar to AA sequence:RefSeq:WP_007131505.1
GO:0004555 - alpha,alpha-trehalase activity [Evidence IEA]
GO:0005991 - trehalose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018756826.1
COORDINATES: similar to AA sequence:RefSeq:WP_009674073.1
COORDINATES: protein motif:HMM:NF018305.2
COORDINATES: protein motif:HMM:NF012371.2
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009225691.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: protein motif:HMM:NF023401.2
COORDINATES: protein motif:HMM:NF012904.2
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020577880.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_012642487.1
COORDINATES: similar to AA sequence:RefSeq:WP_010500170.1
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_019401072.1
COORDINATES: protein motif:HMM:NF005559.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF013696.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015846511.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006039645.1
COORDINATES: similar to AA sequence:RefSeq:WP_014370634.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007131500.1
COORDINATES: similar to AA sequence:RefSeq:WP_015256816.1
COORDINATES: similar to AA sequence:RefSeq:WP_015256812.1
COORDINATES: similar to AA sequence:RefSeq:WP_015256811.1
COORDINATES: similar to AA sequence:RefSeq:WP_015256810.1
COORDINATES: similar to AA sequence:RefSeq:WP_015256809.1
COORDINATES: similar to AA sequence:RefSeq:WP_015256808.1
COORDINATES: similar to AA sequence:RefSeq:WP_015256807.1
COORDINATES: protein motif:HMM:NF037736.2
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015256806.1
COORDINATES: similar to AA sequence:RefSeq:WP_005552491.1
COORDINATES: protein motif:HMM:NF025054.2
COORDINATES: protein motif:HMM:NF013677.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: similar to AA sequence:RefSeq:WP_003226760.1
COORDINATES: similar to AA sequence:RefSeq:WP_015256797.1
COORDINATES: similar to AA sequence:RefSeq:WP_015256796.1
COORDINATES: similar to AA sequence:RefSeq:WP_015256794.1
COORDINATES: similar to AA sequence:RefSeq:WP_015256793.1
COORDINATES: protein motif:HMM:NF012422.2
COORDINATES: similar to AA sequence:RefSeq:WP_015256788.1
COORDINATES: protein motif:HMM:NF013094.2
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015256785.1
COORDINATES: similar to AA sequence:RefSeq:WP_015256781.1
COORDINATES: similar to AA sequence:RefSeq:WP_015256779.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007129539.1
COORDINATES: similar to AA sequence:RefSeq:WP_014371073.1
COORDINATES: similar to AA sequence:RefSeq:WP_017393312.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003243462.1
COORDINATES: protein motif:HMM:NF015292.2
COORDINATES: protein motif:HMM:TIGR00912.1
COORDINATES: protein motif:HMM:TIGR02887.1
GO:0030436 - asexual sporulation [Evidence IEA]; GO:0009847 - spore germination [Evidence IEA]
Ger(x)C family spore germination protein
COORDINATES: similar to AA sequence:RefSeq:WP_010761531.1
COORDINATES: similar to AA sequence:RefSeq:WP_009674303.1
COORDINATES: protein motif:HMM:NF024852.2
COORDINATES: similar to AA sequence:RefSeq:WP_013350911.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015720692.1
COORDINATES: similar to AA sequence:RefSeq:WP_006637706.1
COORDINATES: similar to AA sequence:RefSeq:WP_012927305.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016819562.1
COORDINATES: protein motif:HMM:NF024865.2
COORDINATES: similar to AA sequence:RefSeq:WP_001199800.1
COORDINATES: similar to AA sequence:RefSeq:WP_008708986.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009854020.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003229837.1
COORDINATES: similar to AA sequence:RefSeq:WP_006210698.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007957605.1
COORDINATES: similar to AA sequence:RefSeq:WP_009592487.1
COORDINATES: similar to AA sequence:RefSeq:WP_003322892.1
COORDINATES: protein motif:HMM:NF024252.2
COORDINATES: protein motif:HMM:TIGR03187.1
COORDINATES: similar to AA sequence:RefSeq:WP_005758850.1
COORDINATES: similar to AA sequence:RefSeq:WP_012447969.1