Geobacter metallireducens GS-15 plasmid unnamed, complete sequence.
Bacteria; Thermodesulfobacteriota; Desulfuromonadia; Geobacterales; Geobacteraceae; Geobacter.
The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens
Complete sequence of plasmid of Geobacter metallireducens GS-15
Submitted (11-OCT-2005) US DOE Joint Genome Institute, 2400 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP000149.1.\nURL -- http://www.jgi.doe.gov\nSource DNA and bacteria available from Derek Lovley\n(dlovley@bio.umass.edu)\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-PGF\nQuality assurance done by JGI-Stanford\nAnnotation done by JGI-ORNL and JGI-PGF\nContacts: Paul Richardson (microbes@cuba.jgi-psf.org)\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nAnnotation update without protein changes made on September 7, 2012\nby Aklujkar,M., Krushkal,J., DiBartolo,G., Lapidus,A., Land,M.L.\nand Lovley,D.R.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/22/2023 14:01:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,679\nCDSs (total) :: 3,619\nGenes (coding) :: 3,587\nCDSs (with protein) :: 3,587\nGenes (RNA) :: 60\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 4\nPseudo Genes (total) :: 32\nCDSs (without protein) :: 32\nPseudo Genes (ambiguous residues) :: 0 of 32\nPseudo Genes (frameshifted) :: 10 of 32\nPseudo Genes (incomplete) :: 24 of 32\nPseudo Genes (internal stop) :: 2 of 32\nPseudo Genes (multiple problems) :: 4 of 32\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Geobacter metallireducens
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004514711.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011363043.1
IS4-like element ISGme2 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004514728.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514727.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514726.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514725.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004514724.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514723.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514722.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514721.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbJ
COORDINATES: protein motif:HMM:NF016491.2
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_004514718.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004514717.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514716.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514715.1