Geobacter metallireducens GS-15 plasmid unnamed, complete sequence.
type: Entry
definition: Geobacter metallireducens GS-15 plasmid unnamed, complete sequence.
sequence version: NC_007515.1
sequence date: 2023-02-22
sequence: sequence
division: CON
label: NC_007515.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02598399
keyword: RefSeq
source: Geobacter metallireducens GS-15
organism: Geobacter metallireducens GS-15
taxonomy: Bacteria; Thermodesulfobacteriota; Desulfuromonadia; Geobacterales; Geobacteraceae; Geobacter.
reference: 1
references: 19473543
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP000149.1.\nURL -- http://www.jgi.doe.gov\nSource DNA and bacteria available from Derek Lovley\n(dlovley@bio.umass.edu)\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-PGF\nQuality assurance done by JGI-Stanford\nAnnotation done by JGI-ORNL and JGI-PGF\nContacts: Paul Richardson (microbes@cuba.jgi-psf.org)\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nAnnotation update without protein changes made on September 7, 2012\nby Aklujkar,M., Krushkal,J., DiBartolo,G., Lapidus,A., Land,M.L.\nand Lovley,D.R.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/22/2023 14:01:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,679\nCDSs (total) :: 3,619\nGenes (coding) :: 3,587\nCDSs (with protein) :: 3,587\nGenes (RNA) :: 60\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 4\nPseudo Genes (total) :: 32\nCDSs (without protein) :: 32\nPseudo Genes (ambiguous residues) :: 0 of 32\nPseudo Genes (frameshifted) :: 10 of 32\nPseudo Genes (incomplete) :: 24 of 32\nPseudo Genes (internal stop) :: 2 of 32\nPseudo Genes (multiple problems) :: 4 of 32\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 13762
topology: circular
so has quality: SO_0000988
location: 1..13762
location: region:1-13762:1
RO_0002162: 269799

NC_007515
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02598399
type: BioSample
SIO_000068: biosample

1
title: The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens
author: Aklujkar, M.
author: Krushkal, J.
author: DiBartolo, G.
author: Lapidus, A.
author: Land, M.L.
author: Lovley, D.R.
journal: BMC Microbiol 9, 109 (2009)
pubmed: 19473543
comments: Publication Status: Online-Only

19473543
type: PubMed
SIO_000068: pubmed

2
title: Complete sequence of plasmid of Geobacter metallireducens GS-15
author: Copeland, A.
author: Lucas, S.
author: Lapidus, A.
author: Barry, K.
author: Detter, J.C.
author: Glavina, T.
author: Hammon, N.
author: Israni, S.
author: Pitluck, S.
author: Di Bartolo, G.
author: Chain, P.
author: Schmutz, J.
author: Larimer, F.
author: Land, M.
author: Kyrpides, N.
author: Ivanova, N.
author: Richardson, P.
journal: Unpublished

3
title: Direct Submission
author: Copeland, A.
author: Lucas, S.
author: Lapidus, A.
author: Barry, K.
author: Detter, J.C.
author: Glavina, T.
author: Hammon, N.
author: Israni, S.
author: Pitluck, S.
author: Di Bartolo, G.
author: Chain, P.
author: Schmutz, J.
author: Larimer, F.
author: Land, M.
author: Kyrpides, N.
author: Ivanova, N.
author: Richardson, P.
journal: Submitted (11-OCT-2005) US DOE Joint Genome Institute, 2400 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13762:1
position: 13762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13762:1:source
so part of: sequence
organism: Geobacter metallireducens GS-15
mol type: genomic DNA
strain: GS-15
type material: type strain of Geobacter metallireducens
plasmid: unnamed

269799
type: Taxonomy
SIO_000068: taxonomy

GMET_RS18195
type: Gene
subclass of: SO_0000704
RO_0002162: 269799
locus tag: GMET_RS18195
so part of: sequence
location: complement(join(13670..13762,1..96))
location: region:1-13762:-1
so has part: feature:1-96:-1:exon
so has part: feature:13670-13762:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13762:-1
position: 13762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-96:-1:exon

position:96:-1
position: 96
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:13670-13762:-1:exon

position:13670:-1
position: 13670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

GMET_RS18195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 269799
locus tag: GMET_RS18195
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKPDELSHHEVLHTAHIIGCIWSDHVLDHAAVQGNPELKAQAEKIAEAIGAFYVAVGGQTP
SIO_010081: GMET_RS18195
subclass of: SO_0000673
so part of: GMET_RS18195
location: complement(join(13670..13762,1..96))
location: region:1-13762:-1
so has part: feature:1-96:-1:exon
so has part: feature:13670-13762:-1:exon

WP_004514712.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-96:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:13670-13762:-1:exon

GMET_RS17960
type: Gene
subclass of: SO_0000704
RO_0002162: 269799
locus tag: GMET_RS17960
old locus tag: Gmet_A3565
so part of: sequence
location: complement(963..2063)
location: region:963-2063:-1
so has part: feature:963-2063:-1:exon
subclass of: SO_0000010

position:963:-1
position: 963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2063:-1
position: 2063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:963-2063:-1:exon

GMET_RS17960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 269799
locus tag: GMET_RS17960
old locus tag: Gmet_A3565
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004514711.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication protein RepA
translation: MLFTEMEIEIPKAVFEELQLYIEYLQEKTGKTIDPMAAIGNILQTYFENNGLWGVSEEDFKEKAKIAVKKLLTKKAKKDKPLLTKKVEKLLTQAVEIEQVPAKTAGQIAYQAKALVQVTFPHRDPKTPYYRCDSGKYSLIITADPDHGIPYGTYPRLITCWLVTEIVRTNSRRIVLGKCFSDFLRSIGVGLDSRTRKQVEQQIKRLFSADIKLKYNSKESWQFQRCNVATKAAMWWDTKNPDQFTLDESFVVVGEDFYAMALNAPFPIDLRALAALKQSPMALDIYMWLTLRMCHLAAPYPLSWPQLKSQFGPETSDLDNFRTKFKDALKKVRVVYPHAKLSVNAKELTLFPSPTHVQKAVKRVAA
SIO_010081: GMET_RS17960
subclass of: SO_0000673
so part of: GMET_RS17960
location: complement(963..2063)
location: region:963-2063:-1
so has part: feature:963-2063:-1:exon

WP_004514711.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:963-2063:-1:exon

GMET_RS17965
type: Gene
subclass of: SO_0000704
RO_0002162: 269799
locus tag: GMET_RS17965
so part of: sequence
location: complement(2067..2378)
location: region:2067-2378:-1
so has part: feature:2067-2378:-1:exon
subclass of: SO_0000010

position:2067:-1
position: 2067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2378:-1
position: 2378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2067-2378:-1:exon

GMET_RS17965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 269799
locus tag: GMET_RS17965
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEYTINHEEEGPYWNRVMVNSVHDVLYAAGTLDNFKVSLFSPRYQNEDDEMSVSTITEIIEAEEEGHKAYIFKCKNGKTYLETSLGYTEDQLKNKKTLYSIAG
SIO_010081: GMET_RS17965
subclass of: SO_0000673
so part of: GMET_RS17965
location: complement(2067..2378)
location: region:2067-2378:-1
so has part: feature:2067-2378:-1:exon

WP_148206096.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2067-2378:-1:exon

GMET_RS17970
type: Gene
subclass of: SO_0000704
RO_0002162: 269799
locus tag: GMET_RS17970
old locus tag: Gmet_A3567
so part of: sequence
location: complement(2393..3562)
location: region:2393-3562:-1
so has part: feature:2393-3562:-1:exon
subclass of: SO_0000010

position:2393:-1
position: 2393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3562:-1
position: 3562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2393-3562:-1:exon

GMET_RS17970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 269799
locus tag: GMET_RS17970
old locus tag: Gmet_A3567
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011363043.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS4-like element ISGme2 family transposase
translation: MHTGPTVFKQLLQFLPRYEFNLCVRRHRGEYREKKFSTYDQFLCLAYAQMAGRESLRDIETCLNSHQEKLYHIGFRGDVSRTTLADANERRDWRIFQDFGHVLIGIAQQLYQADAISVELTQPLYAFDSTTIDLCLTLFPWAEFRKTKAAVKMHTLIDLRGPIPTWVTITTGKVHDVRMLDHLPVAKDAIYTMDRGYVDFARLHSIHKQGAFFVVRAKDNLKCQRLYSHPKDKESGVRADQIITLVTQKSKKGYPEKLRRVSYVDKERNKRLVFLTNNFEIPAATVAAIYKQRWQVELFFKWIKQHLRIKSFIGTSVNAVKSQIWVALCIYLLVAITKKKLGVPCSLYTFLQILEVNLFEKKPISSLVAEALKRNADYPERNQLNLFNY
SIO_010081: GMET_RS17970
subclass of: SO_0000673
so part of: GMET_RS17970
location: complement(2393..3562)
location: region:2393-3562:-1
so has part: feature:2393-3562:-1:exon

WP_011363043.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2393-3562:-1:exon

GMET_RS17975
type: Gene
subclass of: SO_0000704
RO_0002162: 269799
locus tag: GMET_RS17975
old locus tag: Gmet_A3641
so part of: sequence
location: complement(3862..4071)
location: region:3862-4071:-1
so has part: feature:3862-4071:-1:exon
subclass of: SO_0000010

position:3862:-1
position: 3862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4071:-1
position: 4071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3862-4071:-1:exon

GMET_RS17975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 269799
locus tag: GMET_RS17975
old locus tag: Gmet_A3641
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004514728.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNGKERQTFITHLTSDHAEARKAYNAATEELRLVTWGKMLGLEAAASCAGMQTLHRDLADLRNRDCENE
SIO_010081: GMET_RS17975
subclass of: SO_0000673
so part of: GMET_RS17975
location: complement(3862..4071)
location: region:3862-4071:-1
so has part: feature:3862-4071:-1:exon

WP_004514728.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3862-4071:-1:exon

GMET_RS17980
type: Gene
subclass of: SO_0000704
RO_0002162: 269799
locus tag: GMET_RS17980
old locus tag: Gmet_A3568
so part of: sequence
location: complement(4068..4409)
location: region:4068-4409:-1
so has part: feature:4068-4409:-1:exon
subclass of: SO_0000010

position:4068:-1
position: 4068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4409:-1
position: 4409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4068-4409:-1:exon

GMET_RS17980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 269799
locus tag: GMET_RS17980
old locus tag: Gmet_A3568
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004514727.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MANTETIDYAILQRLIEAGAIRGAEVIGQPGGWSVIFKYGMTERALGVRGGKVRIFRKIETLVAYLRELGIVQFTVNAANYDPTTTIRPGRPDTSERMKRAFAVAQDIKEGNQ
SIO_010081: GMET_RS17980
subclass of: SO_0000673
so part of: GMET_RS17980
location: complement(4068..4409)
location: region:4068-4409:-1
so has part: feature:4068-4409:-1:exon

WP_004514727.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4068-4409:-1:exon

GMET_RS17985
type: Gene
subclass of: SO_0000704
RO_0002162: 269799
locus tag: GMET_RS17985
old locus tag: Gmet_A3642
so part of: sequence
location: complement(4575..4784)
location: region:4575-4784:-1
so has part: feature:4575-4784:-1:exon
subclass of: SO_0000010

position:4575:-1
position: 4575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4784:-1
position: 4784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4575-4784:-1:exon

GMET_RS17985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 269799
locus tag: GMET_RS17985
old locus tag: Gmet_A3642
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004514726.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKTPESRTDWPRIEAMKDEEIDLTDSPELDADFIREAIPWGERAKKALDNGFLTEEEGKAWLREKLEE
SIO_010081: GMET_RS17985
subclass of: SO_0000673
so part of: GMET_RS17985
location: complement(4575..4784)
location: region:4575-4784:-1
so has part: feature:4575-4784:-1:exon

WP_004514726.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4575-4784:-1:exon

GMET_RS17990
type: Gene
subclass of: SO_0000704
RO_0002162: 269799
locus tag: GMET_RS17990
old locus tag: Gmet_A3569
so part of: sequence
location: complement(4781..5053)
location: region:4781-5053:-1
so has part: feature:4781-5053:-1:exon
subclass of: SO_0000010

position:4781:-1
position: 4781
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5053:-1
position: 5053
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4781-5053:-1:exon

GMET_RS17990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 269799
locus tag: GMET_RS17990
old locus tag: Gmet_A3569
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004514725.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MVWKVEIDPAARRELKKLDPQISGRVLKFLFERVARLDDPRSIGEALKGSRFGDFWKYRVGDYRIITSIEDEALVILVVRVGNRREVYER
SIO_010081: GMET_RS17990
subclass of: SO_0000673
so part of: GMET_RS17990
location: complement(4781..5053)
location: region:4781-5053:-1
so has part: feature:4781-5053:-1:exon

WP_004514725.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4781-5053:-1:exon

GMET_RS17995
type: Gene
subclass of: SO_0000704
RO_0002162: 269799
locus tag: GMET_RS17995
old locus tag: Gmet_A3570
so part of: sequence
location: complement(5037..5261)
location: region:5037-5261:-1
so has part: feature:5037-5261:-1:exon
subclass of: SO_0000010

position:5037:-1
position: 5037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5261:-1
position: 5261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5037-5261:-1:exon

GMET_RS17995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 269799
locus tag: GMET_RS17995
old locus tag: Gmet_A3570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004514724.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6290 family protein
translation: MLAIRLPEEIETRLDSLAKATGRSKSYYVREALVEYLDDLEDIYLAEKRLEDIRAGRTKTIPLEEVMKEYGLES
SIO_010081: GMET_RS17995
subclass of: SO_0000673
so part of: GMET_RS17995
location: complement(5037..5261)
location: region:5037-5261:-1
so has part: feature:5037-5261:-1:exon

WP_004514724.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5037-5261:-1:exon

GMET_RS18000
type: Gene
subclass of: SO_0000704
RO_0002162: 269799
locus tag: GMET_RS18000
old locus tag: Gmet_A3571
so part of: sequence
location: complement(5321..5809)
location: region:5321-5809:-1
so has part: feature:5321-5809:-1:exon
subclass of: SO_0000010

position:5321:-1
position: 5321
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5809:-1
position: 5809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5321-5809:-1:exon

GMET_RS18000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 269799
locus tag: GMET_RS18000
old locus tag: Gmet_A3571
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004514723.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MANVTITEAARLAGISRQYLYTKYIKPGVLTVKKDENEKPCIDTAELMRVFNGRLPGPKGQSTPDPSSDIHALQNMTRENDIKNAALQAEVEALREAIKAADKRETWLQGKVDELTGQLATAHRLLEHKAHPSEPPPADPVPVPDPPQEPKRGFFGRLFGRK
SIO_010081: GMET_RS18000
subclass of: SO_0000673
so part of: GMET_RS18000
location: complement(5321..5809)
location: region:5321-5809:-1
so has part: feature:5321-5809:-1:exon

WP_004514723.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5321-5809:-1:exon

GMET_RS18005
type: Gene
subclass of: SO_0000704
RO_0002162: 269799
locus tag: GMET_RS18005
old locus tag: Gmet_A3643
so part of: sequence
location: complement(6011..6196)
location: region:6011-6196:-1
so has part: feature:6011-6196:-1:exon
subclass of: SO_0000010

position:6011:-1
position: 6011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6196:-1
position: 6196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6011-6196:-1:exon

GMET_RS18005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 269799
locus tag: GMET_RS18005
old locus tag: Gmet_A3643
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004514722.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKQVIMGLVVVVMGAMLVAGCNKAPEGYTADGQPAKALKKGELPKAGPEKNMLDYYKGKK
SIO_010081: GMET_RS18005
subclass of: SO_0000673
so part of: GMET_RS18005
location: complement(6011..6196)
location: region:6011-6196:-1
so has part: feature:6011-6196:-1:exon

WP_004514722.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6011-6196:-1:exon

GMET_RS18010
type: Gene
subclass of: SO_0000704
RO_0002162: 269799
gene: trbJ
locus tag: GMET_RS18010
old locus tag: Gmet_A3572
so part of: sequence
location: complement(6237..6956)
location: region:6237-6956:-1
so has part: feature:6237-6956:-1:exon
subclass of: SO_0000010

position:6237:-1
position: 6237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6956:-1
position: 6956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6237-6956:-1:exon

GMET_RS18010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 269799
gene: trbJ
locus tag: GMET_RS18010
old locus tag: Gmet_A3572
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004514721.1
GO process: GO:0009291 - unidirectional conjugation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer protein TrbJ
translation: MKKALIVTVLILSMSAQAHATIPVLDYTNWAQNLFSYVQQVATAINTAEQLATQYQQLEVAIRQARQLNSDQIRGRIMNGIRQLAEIQQKTRGITYDYGRTEGAFDQYYPDMAAYNGMSGKDYAAQAAKANQQLQNSVRDAMLAQGLISNAATDQDALNALVAASNSADGQLAAAQAGNQISAMVAQQLIQLQQIMATSAREQSSYMAAQAAEKAKPLKKGDLPKGDDRNMLDYLRKKK
SIO_010081: GMET_RS18010
subclass of: SO_0000673
so part of: GMET_RS18010
location: complement(6237..6956)
location: region:6237-6956:-1
so has part: feature:6237-6956:-1:exon

WP_004514721.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6237-6956:-1:exon

GMET_RS18015
type: Gene
subclass of: SO_0000704
RO_0002162: 269799
gene: trbL
locus tag: GMET_RS18015
old locus tag: Gmet_A3573
so part of: sequence
location: complement(7043..8494)
location: region:7043-8494:-1
so has part: feature:7043-8494:-1:exon
subclass of: SO_0000010

position:7043:-1
position: 7043
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8494:-1
position: 8494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7043-8494:-1:exon

GMET_RS18015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 269799
gene: trbL
locus tag: GMET_RS18015
old locus tag: Gmet_A3573
inference: COORDINATES: protein motif:HMM:NF016491.2
GO process: GO:0009291 - unidirectional conjugation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer protein TrbL
translation: MATATPDVQILTQVLETFNSVFGTGKGALLSWAMYIAGALAVIEMVLLGAFHALKGGEDNIIPPLVKKILTIGFFIFLVQGVARSGLAEIILDGFIAVGLKAGGAGVSFSMKNPSSLISAGFLAADPIYDAIQHMAITAIGDRLMAYGCYLIVILAYVVMACQIMITFIEFGIVSTLGIILLPFGISKHTAFLSEKAIGAIIAFGIKLMVLSFVVAVIQPVLLALPALGPDPTFNQMMTLGVTVAVIAFVVAQAPGVASAVLSGSPSLSAGAAAGTALSAAAGAAAPAMAAAGMATGGAAVAGGLAGAKAAAAAGNGSFLGNVARAAAGAMPGASAFQAAKSGAISAAEAGSAGGIKPASGGSSLKPAADAAAKGAADTGKTEATPTPAPAADTTATTTDATPPATGSADTTATDAGKTEPAPTTGTGGGTSSLQGSNVGSGGGNGKGQPRRSSLQDAWQQSQRAVPQDASAGGGAGVRLHVD
SIO_010081: GMET_RS18015
subclass of: SO_0000673
so part of: GMET_RS18015
location: complement(7043..8494)
location: region:7043-8494:-1
so has part: feature:7043-8494:-1:exon

WP_011363044.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7043-8494:-1:exon

GMET_RS18020
type: Gene
subclass of: SO_0000704
RO_0002162: 269799
locus tag: GMET_RS18020
old locus tag: Gmet_A3574
so part of: sequence
location: complement(8572..10875)
location: region:8572-10875:-1
so has part: feature:8572-10875:-1:exon
subclass of: SO_0000010

position:8572:-1
position: 8572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10875:-1
position: 10875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8572-10875:-1:exon

GMET_RS18020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 269799
locus tag: GMET_RS18020
old locus tag: Gmet_A3574
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004514718.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MPWTKSAGQPWQFSGNLPQKRGPKMISRVWDAPGGRSFSATIKYIRGLGKDFEPHEKVEYELTRNVDDINTAIEEMEFVESTGKSAHAAYHFGFSWREGEKPTREEIEACFDHALKALGMEDLQAVAGFHRDTDNYHLHICINRIDYRTGHVRPIDKDRMKLDKACREMELQHGFERDNGSYMINDKGEIVKKSHDPDRPFSLDQGNRRREIETGEKSFKTWAKERAGKDLTAALADGSWDDLHRAAAKYNLDIRPDPKNQGLVIVDRNDPDQYHAKASEIARQLSRGRLEKALGPYQEPTARVKDLAPVIDYKSDTEKMIAVEPEQKQLYREFKDYQEEWKHHAEERKAITAELTAGRKEIIEWKKEQVKALKESDLPGIEKRAQRAAINLGAARRKAEIEDRAAEKRAALGEFGEAKKGWDKYLVERANKGNEAAIYMLRQKKNRLEVEAPEPGTTGEEEAAKKTPLTTLKDLEIKVSRHGNVSFLDKSGAEAYRDTGRQLLFLGHSKNDPAAIKAGLLLSQEKFGRSFELTGSTAWKRLAAAEAVKLGIEITNKELQPYIAELKKAQGIGQQIKGRELLPEIRDEIKIITAKIDQGEKWLAEKGQIDGKTDARRVAEQTATKGISEAIKKERTDLDAEALKLATDMAGGKVSTINREELTARLATNEVNTARLHSYLERPEVQKQVQAEEAKINAVDQETREARAYRADLKKIEKTLAADPKKDRAYKLEPGTDPRDRRQIVKDIQQQINRVQKDIDRGKGMDR
SIO_010081: GMET_RS18020
subclass of: SO_0000673
so part of: GMET_RS18020
location: complement(8572..10875)
location: region:8572-10875:-1
so has part: feature:8572-10875:-1:exon

WP_238379090.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8572-10875:-1:exon

GMET_RS18025
type: Gene
subclass of: SO_0000704
RO_0002162: 269799
locus tag: GMET_RS18025
old locus tag: Gmet_A3575
so part of: sequence
location: complement(10796..11176)
location: region:10796-11176:-1
so has part: feature:10796-11176:-1:exon
subclass of: SO_0000010

position:10796:-1
position: 10796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11176:-1
position: 11176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10796-11176:-1:exon

GMET_RS18025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 269799
locus tag: GMET_RS18025
old locus tag: Gmet_A3575
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004514717.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKAKSGSERRNKSEMIHIRVTAEDLSRYTAKATASGVSVGELARRCLDGRATPSKTTIAAVADLRRAVGELRRFGGLQKYLMTRKEITPEEAQKNLGNIDIALDEIRRAAVAIQRQFAAEEGAEDD
SIO_010081: GMET_RS18025
subclass of: SO_0000673
so part of: GMET_RS18025
location: complement(10796..11176)
location: region:10796-11176:-1
so has part: feature:10796-11176:-1:exon

WP_004514717.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10796-11176:-1:exon

GMET_RS18030
type: Gene
subclass of: SO_0000704
RO_0002162: 269799
locus tag: GMET_RS18030
old locus tag: Gmet_A3576
so part of: sequence
location: 11628..12224
location: region:11628-12224:1
so has part: feature:11628-12224:1:exon
subclass of: SO_0000010

position:11628:1
position: 11628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12224:1
position: 12224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11628-12224:1:exon

GMET_RS18030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 269799
locus tag: GMET_RS18030
old locus tag: Gmet_A3576
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004514716.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGNDKNTAKTLKISKSKSGQSDEKPTYSVDKMRQWLNDNASDTTPDKTPTIWDRLIEIKDDIAAVYPSKMSADKVVKGLKDNGLDITKTTFLTYWQLIKAGHTTRPSTSKKKQPVSEPENSGKNESGFDENPAPVSEEKTGEDLKNSEGEKETYPCPKCKRILTVMRETKPGVHLGQKYISCDADTGGCGYFSYDDGK
SIO_010081: GMET_RS18030
subclass of: SO_0000673
so part of: GMET_RS18030
location: 11628..12224
location: region:11628-12224:1
so has part: feature:11628-12224:1:exon

WP_004514716.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11628-12224:1:exon

GMET_RS18035
type: Gene
subclass of: SO_0000704
RO_0002162: 269799
locus tag: GMET_RS18035
old locus tag: Gmet_A3577
so part of: sequence
location: 12335..12967
location: region:12335-12967:1
so has part: feature:12335-12967:1:exon
subclass of: SO_0000010

position:12335:1
position: 12335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12967:1
position: 12967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12335-12967:1:exon

GMET_RS18035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 269799
locus tag: GMET_RS18035
old locus tag: Gmet_A3577
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004514715.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKESPKHELKSLKDLLDFVRDYPEFMDEITTAMPKATALPGSNQSDFIQPIMPHIVRLKIWGMSDNSIRQLIDFEGPFYFDPRGFGKVLHTAIKKYARSVRYEIAEEVGKIIRESGGDDGHLTETYMDEAIHLFDKWRFPEDQGYENVTDYEFGEAILWAMRGFDPSLYFRRVTAQVLGRKMVKRLKLLYEIDFDSNETHPAEPAHKAA
SIO_010081: GMET_RS18035
subclass of: SO_0000673
so part of: GMET_RS18035
location: 12335..12967
location: region:12335-12967:1
so has part: feature:12335-12967:1:exon

WP_004514715.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12335-12967:1:exon