Pseudarthrobacter psychrotolerans strain YJ56 plasmid unnamed2, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Pseudarthrobacter.
Pseudarthrobacter psychrotolerans sp. nov., isolated from antarctic soil
Submitted (13-JAN-2020) Laboratory of Molecular Environmental Microbiology, Korea University, Anam-Ro, Seongbuk-Gu, Seoul 02841, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP047900.1.\nBacteria and source DNA available from Yoonjae Shin in Division of\nEnvironmental Science and Ecological Engineering. Korea University,\nAnam-Dong, Seungbuk-Ku, Seoul 02841, Republic of Korea.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 23-SEP-2019\nAssembly Method :: HGAP v. 2.3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 218.32x\nSequencing Technology :: PacBio_20K\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/06/2023 01:50:02\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,920\nCDSs (total) :: 4,851\nGenes (coding) :: 4,437\nCDSs (with protein) :: 4,437\nGenes (RNA) :: 69\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 3\nPseudo Genes (total) :: 414\nCDSs (without protein) :: 414\nPseudo Genes (ambiguous residues) :: 0 of 414\nPseudo Genes (frameshifted) :: 340 of 414\nPseudo Genes (incomplete) :: 109 of 414\nPseudo Genes (internal stop) :: 17 of 414\nPseudo Genes (multiple problems) :: 46 of 414\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type material of Pseudarthrobacter psychrotolerans
COORDINATES: similar to AA sequence:RefSeq:WP_013603121.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009358092.1
COORDINATES: similar to AA sequence:RefSeq:WP_018771433.1
COORDINATES: similar to AA sequence:RefSeq:WP_018779714.1
COORDINATES: similar to AA sequence:RefSeq:WP_010149405.1
adenine-specific methyltransferase EcoRI family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016272403.1
COORDINATES: similar to AA sequence:RefSeq:WP_005505150.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: protein motif:HMM:NF025808.2
multiubiquitin domain-containing protein
COORDINATES: protein motif:HMM:NF013094.2
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF016362.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017884303.1
GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012397579.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020075254.1
crotonase/enoyl-CoA hydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013743345.1
COORDINATES: similar to AA sequence:RefSeq:WP_018853177.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: similar to AA sequence:RefSeq:WP_014178019.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012596.2
GO:0003824 - catalytic activity [Evidence IEA]
enoyl-CoA hydratase/isomerase family protein
COORDINATES: protein motif:HMM:NF014757.2
3-hydroxyacyl-CoA dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003799962.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017237423.1
COORDINATES: similar to AA sequence:RefSeq:WP_012933714.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012937160.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016472817.1
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF012706.2
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
ABC transporter substrate-binding protein
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007633164.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011896449.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011690336.1
COORDINATES: protein motif:HMM:NF022019.2
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013347372.1
COORDINATES: similar to AA sequence:RefSeq:WP_012623618.1
COORDINATES: similar to AA sequence:RefSeq:WP_011690854.1
COORDINATES: similar to AA sequence:RefSeq:WP_011931286.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689802.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603139.1
COORDINATES: similar to AA sequence:RefSeq:WP_004018622.1
GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR02228.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04088.1
SipW-dependent-type signal peptide-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004726714.1
COORDINATES: similar to AA sequence:RefSeq:WP_000904941.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013700.2
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011689729.1
COORDINATES: protein motif:HMM:NF013429.2
GO:0016853 - isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018771034.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019609691.1
COORDINATES: similar to AA sequence:RefSeq:WP_011728680.1
COORDINATES: similar to AA sequence:RefSeq:WP_006370659.1
COORDINATES: similar to AA sequence:RefSeq:WP_011691045.1
GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013808710.1
COORDINATES: similar to AA sequence:RefSeq:WP_005270702.1
COORDINATES: similar to AA sequence:RefSeq:WP_005270689.1
COORDINATES: similar to AA sequence:RefSeq:WP_012630853.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013600001.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015936176.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013600009.1
GO:0016861 - intramolecular oxidoreductase activity, interconverting aldoses and ketoses [Evidence IEA]
GO:0019310 - inositol catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011774672.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003804604.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017832720.1
GO:0102662 - malonate-semialdehyde dehydrogenase (acetylating, NAD+) activity [Evidence IEA]
CoA-acylating methylmalonate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_018776041.1
GO:0016823 - hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)
COORDINATES: similar to AA sequence:RefSeq:WP_018762192.1
COORDINATES: similar to AA sequence:RefSeq:WP_014921791.1
GO:0047590 - 5-dehydro-2-deoxygluconokinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015936154.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689635.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611077.1
COORDINATES: similar to AA sequence:RefSeq:WP_011931172.1
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF027584.2
COORDINATES: protein motif:HMM:NF012422.2
LuxR C-terminal-related transcriptional regulator
COORDINATES: protein motif:HMM:NF017524.2
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_011689830.1
COORDINATES: similar to AA sequence:RefSeq:WP_012623623.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_017200351.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603184.1
GO:0009294 - DNA-mediated transformation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012623487.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689751.1
COORDINATES: similar to AA sequence:RefSeq:WP_012623489.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603119.1