Pseudarthrobacter psychrotolerans strain YJ56 plasmid unnamed1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Pseudarthrobacter.
Pseudarthrobacter psychrotolerans sp. nov., isolated from antarctic soil
Submitted (13-JAN-2020) Laboratory of Molecular Environmental Microbiology, Korea University, Anam-Ro, Seongbuk-Gu, Seoul 02841, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP047899.1.\nBacteria and source DNA available from Yoonjae Shin in Division of\nEnvironmental Science and Ecological Engineering. Korea University,\nAnam-Dong, Seungbuk-Ku, Seoul 02841, Republic of Korea.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 23-SEP-2019\nAssembly Method :: HGAP v. 2.3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 218.32x\nSequencing Technology :: PacBio_20K\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/06/2023 01:50:02\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,920\nCDSs (total) :: 4,851\nGenes (coding) :: 4,437\nCDSs (with protein) :: 4,437\nGenes (RNA) :: 69\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 3\nPseudo Genes (total) :: 414\nCDSs (without protein) :: 414\nPseudo Genes (ambiguous residues) :: 0 of 414\nPseudo Genes (frameshifted) :: 340 of 414\nPseudo Genes (incomplete) :: 109 of 414\nPseudo Genes (internal stop) :: 17 of 414\nPseudo Genes (multiple problems) :: 46 of 414\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type material of Pseudarthrobacter psychrotolerans
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF021581.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011777052.1
COORDINATES: protein motif:HMM:NF018691.2
COORDINATES: protein motif:HMM:NF012675.2
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_018762470.1
COORDINATES: similar to AA sequence:RefSeq:WP_012623487.1
COORDINATES: similar to AA sequence:RefSeq:WP_012623623.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF041492.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024991.2
helicase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF020419.2
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012651.2
GO:0003697 - single-stranded DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012630816.1
COORDINATES: similar to AA sequence:RefSeq:WP_003859028.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011777021.1
COORDINATES: protein motif:HMM:NF012742.2
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008839245.1
COORDINATES: protein motif:HMM:NF013228.2
COORDINATES: similar to AA sequence:RefSeq:WP_017589428.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004941497.1
COORDINATES: similar to AA sequence:RefSeq:WP_011931914.1
COORDINATES: protein motif:HMM:NF039499.1
COORDINATES: similar to AA sequence:RefSeq:WP_020018263.1
COORDINATES: similar to AA sequence:RefSeq:WP_020542444.1
COORDINATES: protein motif:HMM:NF015094.2
COORDINATES: similar to AA sequence:RefSeq:WP_019481146.1
COORDINATES: protein motif:HMM:NF021134.2
GO:0016758 - hexosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011690339.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603020.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018771279.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
nuclease-related domain-containing protein
COORDINATES: protein motif:HMM:NF025056.2
GO:0005515 - protein binding [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF024880.2
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF023776.2
COORDINATES: similar to AA sequence:RefSeq:WP_014374933.1
COORDINATES: similar to AA sequence:RefSeq:WP_020170901.1
COORDINATES: similar to AA sequence:RefSeq:WP_014738414.1
COORDINATES: similar to AA sequence:RefSeq:WP_003949420.1
COORDINATES: similar to AA sequence:RefSeq:WP_005103117.1
GO:0008234 - cysteine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013477323.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689739.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016488.2
COORDINATES: protein motif:HMM:NF037531.2
COORDINATES: similar to AA sequence:RefSeq:WP_005182235.1
adenine-specific methyltransferase EcoRI family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016272403.1
COORDINATES: similar to AA sequence:RefSeq:WP_002856212.1
COORDINATES: similar to AA sequence:RefSeq:WP_010079183.1
COORDINATES: protein motif:HMM:NF021897.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF022650.2
COORDINATES: protein motif:HMM:NF013618.2
transglycosylase SLT domain-containing protein
COORDINATES: protein motif:HMM:NF016430.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF025107.2
COORDINATES: protein motif:HMM:NF022388.2
COORDINATES: similar to AA sequence:RefSeq:WP_018779741.1
COORDINATES: similar to AA sequence:RefSeq:WP_018762617.1
COORDINATES: similar to AA sequence:RefSeq:WP_014920323.1
COORDINATES: similar to AA sequence:RefSeq:WP_014920324.1