Aristophania vespae strain DM15PD plasmid pDM15PD, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Aristophania.
Submitted (25-FEB-2022) Genomic and Applied Microbiology & Goettingen Genomics, Georg-August-University Goettingen, Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP092735.1.\nBacteria and source DNA available from r Juan Guzman, Giessen.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2021\nAssembly Method :: Unicycler v. 0.4.8\nAssembly Name :: JGUZn17\nGenome Coverage :: 143\nSequencing Technology :: Illumina MiSeq;Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/11/2023 15:10:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,847\nCDSs (total) :: 1,777\nGenes (coding) :: 1,769\nCDSs (with protein) :: 1,769\nGenes (RNA) :: 70\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 4\nPseudo Genes (total) :: 8\nCDSs (without protein) :: 8\nPseudo Genes (ambiguous residues) :: 0 of 8\nPseudo Genes (frameshifted) :: 5 of 8\nPseudo Genes (incomplete) :: 8 of 8\nPseudo Genes (internal stop) :: 2 of 8\nPseudo Genes (multiple problems) :: 5 of 8\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_015072608.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
flagellar basal body P-ring protein FlgI
COORDINATES: similar to AA sequence:RefSeq:WP_010667409.1
transglycosylase SLT domain-containing protein
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF024821.2
COORDINATES: similar to AA sequence:RefSeq:WP_018980926.1
GO:0009288 - bacterial-type flagellum [Evidence IEA]
GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
COORDINATES: protein motif:HMM:NF012662.2
COORDINATES: similar to AA sequence:RefSeq:WP_015072449.1
The bacterial flagellar biogenesis protein FliP forms a type III secretion system (T3SS)-type pore required for flagellar assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.
flagellar type III secretion system pore protein FliP
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008945688.1
FliM/FliN family flagellar motor switch protein
COORDINATES: similar to AA sequence:RefSeq:WP_012225129.1
COORDINATES: similar to AA sequence:RefSeq:WP_012554969.1
GO:0009431 - bacterial-type flagellum basal body, MS ring [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
flagellar basal-body MS-ring/collar protein FliF
COORDINATES: similar to AA sequence:RefSeq:WP_010666226.1
COORDINATES: similar to AA sequence:RefSeq:WP_012225159.1
GO:0009427 - bacterial-type flagellum basal body, distal rod, L ring [Evidence IEA]
GO:0003774 - cytoskeletal motor activity [Evidence IEA]
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]
flagellar basal body L-ring protein FlgH
COORDINATES: similar to AA sequence:RefSeq:WP_018980914.1
GO:0009428 - bacterial-type flagellum basal body, distal rod, P ring [Evidence IEA]
flagellar basal body P-ring formation chaperone FlgA
COORDINATES: similar to AA sequence:RefSeq:WP_012225161.1
GO:0009426 - bacterial-type flagellum basal body, distal rod [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018980912.1
COORDINATES: similar to AA sequence:RefSeq:WP_012225163.1
GO:0009424 - bacterial-type flagellum hook [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018980909.1
tetratricopeptide repeat-containing glycosyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012554961.1
COORDINATES: similar to AA sequence:RefSeq:WP_018980906.1
COORDINATES: protein motif:HMM:NF015693.2
GO:0009425 - bacterial-type flagellum basal body [Evidence IEA]
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]; GO:0006935 - chemotaxis [Evidence IEA]
flagellar basal body-associated FliL family protein
COORDINATES: protein motif:HMM:NF012698.2
COORDINATES: similar to AA sequence:RefSeq:WP_014753346.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_006115744.1
COORDINATES: similar to AA sequence:RefSeq:WP_001235714.1
COORDINATES: similar to AA sequence:RefSeq:WP_018980954.1
COORDINATES: similar to AA sequence:RefSeq:WP_018980953.1
COORDINATES: similar to AA sequence:RefSeq:WP_018980950.1
flagellar hook-basal body complex protein FliE
COORDINATES: similar to AA sequence:RefSeq:WP_012225085.1
COORDINATES: similar to AA sequence:RefSeq:WP_018980948.1
COORDINATES: similar to AA sequence:RefSeq:WP_018980947.1
EscU/YscU/HrcU family type III secretion system export apparatus switch protein
COORDINATES: similar to AA sequence:RefSeq:WP_018980946.1
flagellar hook-basal body complex protein
COORDINATES: similar to AA sequence:RefSeq:WP_012225100.1
GO:0044781 - bacterial-type flagellum organization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018980942.1
COORDINATES: similar to AA sequence:RefSeq:WP_018980940.1
COORDINATES: protein motif:HMM:NF012894.2
COORDINATES: similar to AA sequence:RefSeq:WP_010666547.1
COORDINATES: similar to AA sequence:RefSeq:WP_013080604.1
COORDINATES: protein motif:HMM:NF018458.2
COORDINATES: similar to AA sequence:RefSeq:WP_010665692.1
COORDINATES: similar to AA sequence:RefSeq:WP_010667758.1