Xylophilus rhododendri strain KACC 21265 plasmid unnamed1, complete sequence.
type: Entry
definition: Xylophilus rhododendri strain KACC 21265 plasmid unnamed1, complete sequence.
sequence version: NZ_CP047651.1
sequence date: 2022-12-09
sequence: sequence
division: CON
label: NZ_CP047651.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN13783577
keyword: RefSeq
source: Xylophilus rhododendri
organism: Xylophilus rhododendri
taxonomy: Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Xylophilus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP047651.1.\nBacteria and source DNA available from KACC.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS HGAP Assembly v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 143.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/09/2022 03:54:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,482\nCDSs (total) :: 5,417\nGenes (coding) :: 5,288\nCDSs (with protein) :: 5,288\nGenes (RNA) :: 65\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 4\nPseudo Genes (total) :: 129\nCDSs (without protein) :: 129\nPseudo Genes (ambiguous residues) :: 0 of 129\nPseudo Genes (frameshifted) :: 92 of 129\nPseudo Genes (incomplete) :: 41 of 129\nPseudo Genes (internal stop) :: 0 of 129\nPseudo Genes (multiple problems) :: 4 of 129\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 18820
topology: circular
so has quality: SO_0000988
location: 1..18820
location: region:1-18820:1
RO_0002162: 2697032

NZ_CP047651
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN13783577
type: BioSample
SIO_000068: biosample

1
title: Genome sequencing of strain KACC 21265
author: Heo, J.
author: Kim, S.-J.
author: Kim, J.-S.
author: Hong, S.-B.
author: Kwon, S.-W.
journal: Unpublished

2
title: Direct Submission
author: Heo, J.
author: Kim, S.-J.
author: Kim, J.-S.
author: Hong, S.-B.
author: Kwon, S.-W.
journal: Submitted (09-JAN-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, Korea, Republic of

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18820:1
position: 18820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18820:1:source
so part of: sequence
organism: Xylophilus rhododendri
mol type: genomic DNA
strain: KACC 21265
isolation source: Flower of Rhododendron sclippenbachii
culture collection: KACC:21265
type material: type strain of Xylophilus rhododendri
plasmid: unnamed1
country: South Korea: Seogwipo-si
collection date: 2019-03-17
collected by: Jun Heo, Soon-Wo Kwon
identified by: Jun Heo, Soon-Wo Kwon

2697032
type: Taxonomy
SIO_000068: taxonomy

GT347_RS27145
type: Gene
subclass of: SO_0000704
RO_0002162: 2697032
locus tag: GT347_RS27145
old locus tag: GT347_27145
so part of: sequence
location: join(18533..18820,1..345)
location: region:1-18820:1
so has part: feature:18533-18820:1:exon
so has part: feature:1-345:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:18533-18820:1:exon

position:18533:1
position: 18533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-345:1:exon

position:345:1
position: 345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GT347_RS27145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2697032
locus tag: GT347_RS27145
old locus tag: GT347_27145
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017154806.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MKVIAVLNQKGGSGKTTIATHLARALQLGGAGVLLVDSDPQGSARDWAAVREDQPLTVVGIDRPTIDRDLKNVASKMDFAVIDGAPRASDMAVSAIKAANFVLIPVQPSPYDIWAASDLVDLVKQRIEVTDGKLQAAFVVSRLIKGTRIGGEVAEALAGYGLPILESRIAQRVSYPGTAATGTTVLDAEPDGDAAAEVRALADEIKQKLI
SIO_010081: GT347_RS27145
subclass of: SO_0000673
so part of: GT347_RS27145
location: join(18533..18820,1..345)
location: region:1-18820:1
so has part: feature:18533-18820:1:exon
so has part: feature:1-345:1:exon

WP_160555545.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18533-18820:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-345:1:exon

GT347_RS27150
type: Gene
subclass of: SO_0000704
RO_0002162: 2697032
locus tag: GT347_RS27150
old locus tag: GT347_27150
so part of: sequence
location: 366..587
location: region:366-587:1
so has part: feature:366-587:1:exon
subclass of: SO_0000010

position:366:1
position: 366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:587:1
position: 587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:366-587:1:exon

GT347_RS27150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2697032
locus tag: GT347_RS27150
old locus tag: GT347_27150
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005918372.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid partition protein ParG
translation: MSKINSTLSAGRPSARTDRAAATLASLTDDAGGTKRVNFELSAEQHARLKIYATKQGKSIKDLLTEYVVGLPA
SIO_010081: GT347_RS27150
subclass of: SO_0000673
so part of: GT347_RS27150
location: 366..587
location: region:366-587:1
so has part: feature:366-587:1:exon

WP_160555546.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:366-587:1:exon

GT347_RS27155
type: Gene
subclass of: SO_0000704
RO_0002162: 2697032
locus tag: GT347_RS27155
old locus tag: GT347_27155
so part of: sequence
location: 658..1656
location: region:658-1656:1
so has part: feature:658-1656:1:exon
subclass of: SO_0000010

position:658:1
position: 658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1656:1
position: 1656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:658-1656:1:exon

GT347_RS27155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2697032
locus tag: GT347_RS27155
old locus tag: GT347_27155
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014003880.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication protein RepA
translation: MSKGPQQIGEVMGDLLAQAQAKAAAPAPKRVSKTRVTPAGVIVTEADRNLIAAGAEIANTPPTGDDMAFTHAVLCQVGLPRAKVEGREFMRQSGSAWVNVQAGYLDEGRGPVLQPVPYGVMPRLGLAWVSTFAVRNKEREIPIGDTAAEFLRLMGMESDGRRYATLRKQMHALAAARLQLGFKGRTYNGQPVQQFDAWLSNKESQMRALWPGSMVLSEDYYGALIESAVPLDNRALHALKGSALALDVYAWLAHRLHRIEGRGMTLHWKALREQFAQEYQGKHPDKDFKKEFLPVLKKVLAVYPQARVKPVTGGVLLLGSPPPIAYKGGPSR
SIO_010081: GT347_RS27155
subclass of: SO_0000673
so part of: GT347_RS27155
location: 658..1656
location: region:658-1656:1
so has part: feature:658-1656:1:exon

WP_229722969.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:658-1656:1:exon

GT347_RS27160
type: Gene
subclass of: SO_0000704
RO_0002162: 2697032
locus tag: GT347_RS27160
old locus tag: GT347_27160
so part of: sequence
location: 2476..3150
location: region:2476-3150:1
so has part: feature:2476-3150:1:exon
subclass of: SO_0000010

position:2476:1
position: 2476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3150:1
position: 3150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2476-3150:1:exon

GT347_RS27160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2697032
locus tag: GT347_RS27160
old locus tag: GT347_27160
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020750540.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MTTAPTAIPADVRERIAAAASELFAQSARQAMPTVDAVRRAARVDMNAASTVMKEWRRAQIAQSIPVAVAVPEAVQQASAAAVAAIWLQAQELASEALRNAQAAWETERAELDALRQEMAEAFERQAGELVAAQEQVQALEDVRQLLAQAGARADQAEARLEQAEHRAAGMADELARVKGERDTATETAAKARESAAGVAGQLLAMQQQNAALLAAIGPKAAGG
SIO_010081: GT347_RS27160
subclass of: SO_0000673
so part of: GT347_RS27160
location: 2476..3150
location: region:2476-3150:1
so has part: feature:2476-3150:1:exon

WP_160555547.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2476-3150:1:exon

GT347_RS27165
type: Gene
subclass of: SO_0000704
RO_0002162: 2697032
locus tag: GT347_RS27165
old locus tag: GT347_27165
so part of: sequence
location: 3181..3465
location: region:3181-3465:1
so has part: feature:3181-3465:1:exon
subclass of: SO_0000010

position:3181:1
position: 3181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3465:1
position: 3465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3181-3465:1:exon

GT347_RS27165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2697032
locus tag: GT347_RS27165
old locus tag: GT347_27165
inference: COORDINATES: protein motif:HMM:NF016876.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MSYEVVWLEPAIENVLEFAAYVAEDNLRAAFELEEKLFRSTDLLADQPYLFRASPFVPGQREIVVLPNYIVLYEVDDERQLVTVTDVVHARRQR
SIO_010081: GT347_RS27165
subclass of: SO_0000673
so part of: GT347_RS27165
location: 3181..3465
location: region:3181-3465:1
so has part: feature:3181-3465:1:exon

WP_160555548.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3181-3465:1:exon

GT347_RS27170
type: Gene
subclass of: SO_0000704
RO_0002162: 2697032
locus tag: GT347_RS27170
old locus tag: GT347_27170
so part of: sequence
location: complement(3493..3702)
location: region:3493-3702:-1
so has part: feature:3493-3702:-1:exon
subclass of: SO_0000010

position:3493:-1
position: 3493
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3702:-1
position: 3702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3493-3702:-1:exon

GT347_RS27170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2697032
locus tag: GT347_RS27170
old locus tag: GT347_27170
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTFPDSAAPATDARFVESEAAYAQRLQASVARNKADPRPPVSHARAKEMMRELLQTKLQSQSENKRLHA
SIO_010081: GT347_RS27170
subclass of: SO_0000673
so part of: GT347_RS27170
location: complement(3493..3702)
location: region:3493-3702:-1
so has part: feature:3493-3702:-1:exon

WP_160555549.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3493-3702:-1:exon

GT347_RS27175
type: Gene
subclass of: SO_0000704
RO_0002162: 2697032
locus tag: GT347_RS27175
old locus tag: GT347_27175
so part of: sequence
location: 3771..4397
location: region:3771-4397:1
so has part: feature:3771-4397:1:exon
subclass of: SO_0000010

position:3771:1
position: 3771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4397:1
position: 4397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3771-4397:1:exon

GT347_RS27175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2697032
locus tag: GT347_RS27175
old locus tag: GT347_27175
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010448498.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MPKVIAYLRVSTDAQDVANQRHGIAGYCVARALHAPMFIEDTVSGRTPWQQRQLGVLIDQAEAGDVLVVAEISRLARSTLQVLEIMRKCVGKHVHLHIVKSGIVLDGSMQSTIMGTMLGLAAEIERDFISSRTKEALARRKAAGIQLGRPPGRAAHLTLDPQASVIDGYLSKKMPKRTMAKLLGVAPNTLYGWLRARRPAKAPRPKKG
SIO_010081: GT347_RS27175
subclass of: SO_0000673
so part of: GT347_RS27175
location: 3771..4397
location: region:3771-4397:1
so has part: feature:3771-4397:1:exon

WP_160555550.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3771-4397:1:exon

GT347_RS27180
type: Gene
subclass of: SO_0000704
RO_0002162: 2697032
locus tag: GT347_RS27180
old locus tag: GT347_27180
so part of: sequence
location: complement(4384..4917)
location: region:4384-4917:-1
so has part: feature:4384-4917:-1:exon
subclass of: SO_0000010

position:4384:-1
position: 4384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4917:-1
position: 4917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4384-4917:-1:exon

GT347_RS27180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2697032
locus tag: GT347_RS27180
old locus tag: GT347_27180
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004367375.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metal-dependent hydrolase
translation: MKWVSHIAIAGAVCVVFNPAAVPAAVLGSTAPDWFEWVLSAMQRRRVKHRGITHYLAAWLIVAAAGHFVWDWNGWLFWFAMGGAIHWICDALTVSGAPLGWWSDRRMTLFGGKVQTGRPSEYIVTIVVLVICAAVVWVTRSHGNGGPFVPFFYDWAGFYRAGLVSAHEWRANRFNLF
SIO_010081: GT347_RS27180
subclass of: SO_0000673
so part of: GT347_RS27180
location: complement(4384..4917)
location: region:4384-4917:-1
so has part: feature:4384-4917:-1:exon

WP_160555551.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4384-4917:-1:exon

GT347_RS27185
type: Gene
subclass of: SO_0000704
RO_0002162: 2697032
locus tag: GT347_RS27185
old locus tag: GT347_27185
so part of: sequence
location: complement(4914..5639)
location: region:4914-5639:-1
so has part: feature:4914-5639:-1:exon
subclass of: SO_0000010

position:4914:-1
position: 4914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5639:-1
position: 5639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4914-5639:-1:exon

GT347_RS27185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2697032
locus tag: GT347_RS27185
old locus tag: GT347_27185
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MCPLRRPARPGHRLVLAIVFCMVLLRTAAADEGEKQPFELPTLSGQSGDFHLPDKPAAIGPLPDARELFDIALSCWPAPSYFRGELNLEGRLRTDRSTSISNEGALSAGSRASVALVARIPLYSASELDRDRQREYDRRTRAAEAVGALVWALTDRVRAERELELVQALERRSQQRVKVGVADTTEQVAYLEKVSALQGTVFKQSGEIQKSRLALLAICSADTADQVDQYIGRYVKRGPHP
SIO_010081: GT347_RS27185
subclass of: SO_0000673
so part of: GT347_RS27185
location: complement(4914..5639)
location: region:4914-5639:-1
so has part: feature:4914-5639:-1:exon

WP_160555552.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4914-5639:-1:exon

GT347_RS27190
type: Gene
subclass of: SO_0000704
RO_0002162: 2697032
locus tag: GT347_RS27190
old locus tag: GT347_27190
so part of: sequence
location: complement(5646..6302)
location: region:5646-6302:-1
so has part: feature:5646-6302:-1:exon
subclass of: SO_0000010

position:5646:-1
position: 5646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6302:-1
position: 6302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5646-6302:-1:exon

GT347_RS27190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2697032
locus tag: GT347_RS27190
old locus tag: GT347_27190
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVDGSKRRVPIVRTRARKYGPVLDEQVLSIRRDIVITGPNACGKSRWLTKLHLRCGEIWPKRPTLYVRSMEPLQSWFEDPRIAAYAEQQGRPWAKLRSYERVDMLIEWIAEEKAVLMLDDAHKLAGRKLDIAVRMATRSRILVVGAFAHQSIPMSLRLLMDQRNPQRIALRGEAAYDATSIAMWLLLLITMAAGWWQLAAVLGGMKVLAGGRGAAKQT
SIO_010081: GT347_RS27190
subclass of: SO_0000673
so part of: GT347_RS27190
location: complement(5646..6302)
location: region:5646-6302:-1
so has part: feature:5646-6302:-1:exon

WP_229722970.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5646-6302:-1:exon

GT347_RS27195
type: Gene
subclass of: SO_0000704
RO_0002162: 2697032
locus tag: GT347_RS27195
old locus tag: GT347_27195
so part of: sequence
location: 7552..7806
location: region:7552-7806:1
so has part: feature:7552-7806:1:exon
subclass of: SO_0000010

position:7552:1
position: 7552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7806:1
position: 7806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7552-7806:1:exon

GT347_RS27195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2697032
locus tag: GT347_RS27195
old locus tag: GT347_27195
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVNTPENLAAISAASSQEVAAQLVINSATSDLSKDLYFADLPPDDQKLVEHFMSSYGISDDVEALGYIAEIAQPEDISLPPDAE
SIO_010081: GT347_RS27195
subclass of: SO_0000673
so part of: GT347_RS27195
location: 7552..7806
location: region:7552-7806:1
so has part: feature:7552-7806:1:exon

WP_160555554.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7552-7806:1:exon

GT347_RS27200
type: Gene
subclass of: SO_0000704
RO_0002162: 2697032
locus tag: GT347_RS27200
old locus tag: GT347_27200
so part of: sequence
location: 7820..8173
location: region:7820-8173:1
so has part: feature:7820-8173:1:exon
subclass of: SO_0000010

position:7820:1
position: 7820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8173:1
position: 8173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7820-8173:1:exon

GT347_RS27200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2697032
locus tag: GT347_RS27200
old locus tag: GT347_27200
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTASSQAIDVKDLPIGGRTLFMQGKLATAEFHRTAEDVGVIRYLANGNQAEVLDVQVAIVSGAPSELKKFDSNFWKVQVNGTPTNASTLDEISKIIGPSFGFKADPNTGVLNFVTSA
SIO_010081: GT347_RS27200
subclass of: SO_0000673
so part of: GT347_RS27200
location: 7820..8173
location: region:7820-8173:1
so has part: feature:7820-8173:1:exon

WP_160555555.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7820-8173:1:exon

GT347_RS27205
type: Gene
subclass of: SO_0000704
RO_0002162: 2697032
locus tag: GT347_RS27205
old locus tag: GT347_27205
so part of: sequence
location: 8573..8842
location: region:8573-8842:1
so has part: feature:8573-8842:1:exon
subclass of: SO_0000010

position:8573:1
position: 8573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8842:1
position: 8842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8573-8842:1:exon

GT347_RS27205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2697032
locus tag: GT347_RS27205
old locus tag: GT347_27205
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAETPVPLGTDAREGLRQVLQHVGALASAGIGITRDRAQACESTDELQQQLQVMQYLMDRIGWASDVGLRKLGDPGALERAEDWMLPAV
SIO_010081: GT347_RS27205
subclass of: SO_0000673
so part of: GT347_RS27205
location: 8573..8842
location: region:8573-8842:1
so has part: feature:8573-8842:1:exon

WP_160555556.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8573-8842:1:exon

GT347_RS27210
type: Gene
subclass of: SO_0000704
RO_0002162: 2697032
locus tag: GT347_RS27210
old locus tag: GT347_27210
so part of: sequence
location: complement(8874..10169)
location: region:8874-10169:-1
so has part: feature:8874-10169:-1:exon
subclass of: SO_0000010

position:8874:-1
position: 8874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10169:-1
position: 10169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8874-10169:-1:exon

GT347_RS27210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2697032
locus tag: GT347_RS27210
old locus tag: GT347_27210
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019577806.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Y-family DNA polymerase
translation: MFALVDGNNFYVSCERVFRPSLAGRAVIVLSNNDGCAIARSNEAKALGIQMGTPWFEIRDKLPEGTVVALSANFGLYGDMSNRMMSIAAGLGPEQEIYSIDESFIDLAGVRDVTRRAVRVRSRIHEWIGIPCGIGIGQTKTLAKLANHVAKTAERKPGSYCEDLAQVANLAALPASDLDTVLQATELGEIWGIGRRIGAQLQAAGLVTALDVVRLDAAMVRARWGVVLERTVRELQGMPCIDLEGQPPAKKEIASTRSFGRPVTQLEDLVEAVTEFAQRAAEKLRRQSSVAGQVAVFVHTSPHRKELPQYSRATVVPLRKPTADTGLLVQAAVRGMQAIYRPGFHMAKAGVHLLDLQDGSVEQGELALDDGVEDRGSLMQALDQLNQRYGRGTVAMASAGVEGARRNWVMKQERRTPDYTTCWKSMPLVMA
SIO_010081: GT347_RS27210
subclass of: SO_0000673
so part of: GT347_RS27210
location: complement(8874..10169)
location: region:8874-10169:-1
so has part: feature:8874-10169:-1:exon

WP_160555567.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8874-10169:-1:exon

GT347_RS27215
type: Gene
subclass of: SO_0000704
RO_0002162: 2697032
gene: umuD
locus tag: GT347_RS27215
old locus tag: GT347_27215
so part of: sequence
location: complement(10178..10627)
location: region:10178-10627:-1
so has part: feature:10178-10627:-1:exon
subclass of: SO_0000010

position:10178:-1
position: 10178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10627:-1
position: 10627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10178-10627:-1:exon

GT347_RS27215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2697032
gene: umuD
locus tag: GT347_RS27215
old locus tag: GT347_27215
EC number: 2.7.7.7
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011630648.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: translesion error-prone DNA polymerase V autoproteolytic subunit
translation: MPSPALLLPGHPVPIAAVSLFLPLAGDRVQAGFPSPAEDFNCKRIDLTEQLVQHPQATFLLRVRGDSMREAGIFDGDVLVVDRAIRAAHGHIVVAVLDAGDFTVKHLVKRAGQVRLVAANPTYPDIVPREGQTLVIWGVVTASIKQFKA
SIO_010081: GT347_RS27215
subclass of: SO_0000673
so part of: GT347_RS27215
location: complement(10178..10627)
location: region:10178-10627:-1
so has part: feature:10178-10627:-1:exon

WP_160555557.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10178-10627:-1:exon

GT347_RS27220
type: Gene
subclass of: SO_0000704
RO_0002162: 2697032
locus tag: GT347_RS27220
old locus tag: GT347_27220
so part of: sequence
location: 10722..11396
location: region:10722-11396:1
so has part: feature:10722-11396:1:exon
subclass of: SO_0000010

position:10722:1
position: 10722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11396:1
position: 11396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10722-11396:1:exon

GT347_RS27220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2697032
locus tag: GT347_RS27220
old locus tag: GT347_27220
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019437956.1
GO function: GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SOS response-associated peptidase family protein
translation: MCSHYEAPLRQLLQAGFPSAAIPGAWDKPDMWPGYIGPFIRRPAEIDSGDEAVPPLEVLAGNFGLLPIWAKDESLAKRTYNARSETVAEKPAFRDAWKRAQHCIIPAQAIYEPDWRSGKAVPTRISRSDGELLGIAGLYERRQAAGGGWAYSFTMLTLNADTHPIFKELHRPDPKRPAELQDKRMVAILPRGLYDAWLDAPAAGSMEFMRMFPADRLEALAKTS
SIO_010081: GT347_RS27220
subclass of: SO_0000673
so part of: GT347_RS27220
location: 10722..11396
location: region:10722-11396:1
so has part: feature:10722-11396:1:exon

WP_160555558.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10722-11396:1:exon

GT347_RS27225
type: Gene
subclass of: SO_0000704
RO_0002162: 2697032
locus tag: GT347_RS27225
old locus tag: GT347_27225
so part of: sequence
location: complement(11416..12744)
location: region:11416-12744:-1
so has part: feature:11416-12744:-1:exon
subclass of: SO_0000010

position:11416:-1
position: 11416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12744:-1
position: 12744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11416-12744:-1:exon

GT347_RS27225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2697032
locus tag: GT347_RS27225
old locus tag: GT347_27225
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTLNFLLHACHKNSRFIKKLKFIPPLVTFFVCAAATAQTCDALIQHGLRNITTSFSSEATAALQYFRHCQKNLDTMDSSRLAEAEVDIFGEGRGGGSYNEQQRRSSLQEWCTANRATAQRNQSSFQNSQVLYQGGLDAWNQCNALKIKGVQVAPKISADNDTVDIGVSFRAGVVGYYLLTGIQAEGYACKTSSPDGKKVTFPSRIEQLAFSVNCRRNPAKKETLGNETYLRKTRGVITIQTSDEPVQLFFPEEFQPTLPAAQATRILKMLPKAEPPVGTVLASTFTESQFFSDVNIPADATKWIPADGRLLPPGSIYEKITGKNAAPDLRWERDARVIVGTASGQANSGENVRAFAVGAPPEATWLWTVGLRDIAGNRPNNDYEQSEDQFQVFADSDGVITAQGRTLNWKHGAWGSWKAGTANVVGIATRKRDHLFYYVKIN
SIO_010081: GT347_RS27225
subclass of: SO_0000673
so part of: GT347_RS27225
location: complement(11416..12744)
location: region:11416-12744:-1
so has part: feature:11416-12744:-1:exon

WP_160555559.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11416-12744:-1:exon

GT347_RS27230
type: Gene
subclass of: SO_0000704
RO_0002162: 2697032
locus tag: GT347_RS27230
old locus tag: GT347_27230
pseudo: true
so part of: sequence
location: 13195..>13818
location: region:13195-13818:1
so has part: feature:13195-13818:1:exon
subclass of: SO_0000010

position:13195:1
position: 13195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13818:1
position: 13818
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13195-13818:1:exon

GT347_RS27230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2697032
locus tag: GT347_RS27230
old locus tag: GT347_27230
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020750547.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase family protein
SIO_010081: GT347_RS27230
subclass of: SO_0000673
so part of: GT347_RS27230
location: 13195..>13818
location: region:13195-13818:1
so has part: feature:13195-13818:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13195-13818:1:exon

GT347_RS27235
type: Gene
subclass of: SO_0000704
RO_0002162: 2697032
locus tag: GT347_RS27235
old locus tag: GT347_27235
so part of: sequence
location: 14438..14965
location: region:14438-14965:1
so has part: feature:14438-14965:1:exon
subclass of: SO_0000010

position:14438:1
position: 14438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14965:1
position: 14965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14438-14965:1:exon

GT347_RS27235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2697032
locus tag: GT347_RS27235
old locus tag: GT347_27235
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAEYAKEIRELHWPTVTGDQVWSSETGGFAMLPRTAGMVAEVVIREAHKKMFKASSAAGTTYITVWLHAQACGVARIDSEEDAAFESGYGGERGVTTFRRHLRTLKAMGFIDFVEESRGRVKWILIFNPYQVVKKLHEEGNLTTPTFRAVSERAIGIGVSHEMQEEDEGGNDVAQ
SIO_010081: GT347_RS27235
subclass of: SO_0000673
so part of: GT347_RS27235
location: 14438..14965
location: region:14438-14965:1
so has part: feature:14438-14965:1:exon

WP_160555561.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14438-14965:1:exon

GT347_RS27240
type: Gene
subclass of: SO_0000704
RO_0002162: 2697032
locus tag: GT347_RS27240
old locus tag: GT347_27240
so part of: sequence
location: 14970..15224
location: region:14970-15224:1
so has part: feature:14970-15224:1:exon
subclass of: SO_0000010

position:14970:1
position: 14970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15224:1
position: 15224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14970-15224:1:exon

GT347_RS27240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2697032
locus tag: GT347_RS27240
old locus tag: GT347_27240
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MELLEELNATNECYVRKKLALDGYSDWQRPVAQHWLTERNLARKEAVTKSRMRWLRLRVFVALCGFVGTLLWHYPIVFNAPFIR
SIO_010081: GT347_RS27240
subclass of: SO_0000673
so part of: GT347_RS27240
location: 14970..15224
location: region:14970-15224:1
so has part: feature:14970-15224:1:exon

WP_229722966.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14970-15224:1:exon

GT347_RS27245
type: Gene
subclass of: SO_0000704
RO_0002162: 2697032
locus tag: GT347_RS27245
old locus tag: GT347_27245
so part of: sequence
location: complement(15267..15554)
location: region:15267-15554:-1
so has part: feature:15267-15554:-1:exon
subclass of: SO_0000010

position:15267:-1
position: 15267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15554:-1
position: 15554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15267-15554:-1:exon

GT347_RS27245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2697032
locus tag: GT347_RS27245
old locus tag: GT347_27245
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTPTELPNEELDELSQEWLNALCEQALHDDKLRSAVEMVSSLHTSMLEGQPVPSTHQPMLRQMLAAAAILKVQEIGWAVEIQQKSKQQGDDSIPV
SIO_010081: GT347_RS27245
subclass of: SO_0000673
so part of: GT347_RS27245
location: complement(15267..15554)
location: region:15267-15554:-1
so has part: feature:15267-15554:-1:exon

WP_229722967.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15267-15554:-1:exon

GT347_RS27250
type: Gene
subclass of: SO_0000704
RO_0002162: 2697032
locus tag: GT347_RS27250
old locus tag: GT347_27250
so part of: sequence
location: 15772..15921
location: region:15772-15921:1
so has part: feature:15772-15921:1:exon
subclass of: SO_0000010

position:15772:1
position: 15772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15921:1
position: 15921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15772-15921:1:exon

GT347_RS27250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2697032
locus tag: GT347_RS27250
old locus tag: GT347_27250
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHSARALQLGGAGVLLVDSDPQAAPRTAAVWGSTADPGRGIDRPTIDQI
SIO_010081: GT347_RS27250
subclass of: SO_0000673
so part of: GT347_RS27250
location: 15772..15921
location: region:15772-15921:1
so has part: feature:15772-15921:1:exon

WP_229722968.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15772-15921:1:exon

GT347_RS27255
type: Gene
subclass of: SO_0000704
RO_0002162: 2697032
locus tag: GT347_RS27255
old locus tag: GT347_27255
so part of: sequence
location: complement(16029..17162)
location: region:16029-17162:-1
so has part: feature:16029-17162:-1:exon
subclass of: SO_0000010

position:16029:-1
position: 16029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17162:-1
position: 17162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16029-17162:-1:exon

GT347_RS27255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2697032
locus tag: GT347_RS27255
old locus tag: GT347_27255
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKNLTTLSASALGKFLNLRNEPVVGKITPPKDFATEKAVLDNLILGNSWTGSSGVRGYDFKLDNKLHIALTMKCADDHFFSLSQDTQDGIKFENIPGSIYLFLAHQLQLMPTGGFTPDWVEEYIAGPASSEEGLKLDVIIQSLEDISVFSVDDAFLAMGNITPQYIANYISTYDPELNIGRLGDKALQSIREIFLREKKHLTQENFFNALTATKPQHAFLEIYRVLEFIFFLPRVRGLLLSLQGQGLSAQMDIMALASLCHRELGWKRIERDSIDRLFKDYSAANYNEFIDLHASCSPFTSLVIAESTDPLEKRVESVQKMGEKFYQLRNQIAHQFFPDDILACSPADWTVLIEFTLNCIKYFYERDFEIAAAGDI
SIO_010081: GT347_RS27255
subclass of: SO_0000673
so part of: GT347_RS27255
location: complement(16029..17162)
location: region:16029-17162:-1
so has part: feature:16029-17162:-1:exon

WP_160555564.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16029-17162:-1:exon

GT347_RS27260
type: Gene
subclass of: SO_0000704
RO_0002162: 2697032
locus tag: GT347_RS27260
old locus tag: GT347_27260
so part of: sequence
location: complement(17159..18340)
location: region:17159-18340:-1
so has part: feature:17159-18340:-1:exon
subclass of: SO_0000010

position:17159:-1
position: 17159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18340:-1
position: 18340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17159-18340:-1:exon

GT347_RS27260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2697032
locus tag: GT347_RS27260
old locus tag: GT347_27260
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTPIFLTDTRVQCLSGLGHLDVHYYLSLVNEIYKDNGGIAGQRAPLKTKTGISIRTRMVDDLRKGAILPPIVIGAVVTEETFALAKNCETNEQFFDLFGKISKSSLSIIDGMQRTTALETAVSDENTNLVNKNIRIDLWLAKNLDSLVYRMLVLNTGQVPWDIKRQLETIYKQVLLQIDKQIPNIDVFNIDDKERRSDAGQYRSTRIVELFLAFTSRKPHIELKEKVAEDFARMEATEATANEAALPAFIETMKLLAALDRAFANTAMAEEYVGSGTRFKEGRDIFTSAPASIAFSAAAAQYLLGKPGYPFEFSELQTRLPELADKVAAIIQKINSSASGASFIDYLTLNEKVSARSGRIGEYEREFFFRAFEHMFMHADSLETLTPCWSSYK
SIO_010081: GT347_RS27260
subclass of: SO_0000673
so part of: GT347_RS27260
location: complement(17159..18340)
location: region:17159-18340:-1
so has part: feature:17159-18340:-1:exon

WP_160555565.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17159-18340:-1:exon