Sporolactobacillus terrae strain EFEL7003 plasmid unnamed, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Sporolactobacillaceae; Sporolactobacillus.
Whole genome sequence of Sporolactobacillus terrae EFEL 7003
Submitted (01-SEP-2021) Food Science and Biotechnology, Chungbuk National University, 1 chungdae-ro, seowon-gu, cheongju, chungbuk 28644, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP082838.1.\nBacteria and source DNA available from Korean Collection for Type\nCultures (KCTC14607BP).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 26-AUG-2021\nAssembly Method :: SPAdes v. 3.15.2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 465.0x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 06:37:44\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,215\nCDSs (total) :: 3,126\nGenes (coding) :: 3,087\nCDSs (with protein) :: 3,087\nGenes (RNA) :: 89\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 64\nncRNAs :: 4\nPseudo Genes (total) :: 39\nCDSs (without protein) :: 39\nPseudo Genes (ambiguous residues) :: 0 of 39\nPseudo Genes (frameshifted) :: 12 of 39\nPseudo Genes (incomplete) :: 25 of 39\nPseudo Genes (internal stop) :: 6 of 39\nPseudo Genes (multiple problems) :: 4 of 39\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003349826.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF040212.1
COORDINATES: similar to AA sequence:RefSeq:WP_010532485.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF037437.2
COORDINATES: protein motif:HMM:NF039645.1
COORDINATES: protein motif:HMM:NF015354.2
COORDINATES: similar to AA sequence:RefSeq:WP_017895783.1
COORDINATES: similar to AA sequence:RefSeq:WP_000561948.1