Streptococcus ruminicola strain CNU_G3 plasmid p1_CUN_G3, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.
Complete genome sequence of Streptococcus sp. CNU G3 isolated from Bos taurus coreanae(Hanwoo)
Submitted (09-DEC-2019) Infectious Disease Research Center, Korea Research Institute of Bioscience & Biotechnology, 125 Gwahangno, Daejeon 34141, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP046625.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: FALCON v. 2.1.4\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 541.0x\nSequencing Technology :: PacBio RSII; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/19/2023 15:15:42\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,892\nCDSs (total) :: 1,798\nGenes (coding) :: 1,780\nCDSs (with protein) :: 1,780\nGenes (RNA) :: 94\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 69\nncRNAs :: 4\nPseudo Genes (total) :: 18\nCDSs (without protein) :: 18\nPseudo Genes (ambiguous residues) :: 0 of 18\nPseudo Genes (frameshifted) :: 12 of 18\nPseudo Genes (incomplete) :: 6 of 18\nPseudo Genes (internal stop) :: 6 of 18\nPseudo Genes (multiple problems) :: 5 of 18\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_017643009.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017649325.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014295359.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_017649326.1
COORDINATES: similar to AA sequence:RefSeq:WP_017646569.1
COORDINATES: similar to AA sequence:RefSeq:WP_000924121.1
COORDINATES: similar to AA sequence:RefSeq:WP_017768605.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014620297.1
COORDINATES: similar to AA sequence:RefSeq:WP_000235823.1
COORDINATES: similar to AA sequence:RefSeq:WP_013851992.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_000371894.1
COORDINATES: similar to AA sequence:RefSeq:WP_000488497.1
COORDINATES: similar to AA sequence:RefSeq:WP_014295369.1
COORDINATES: similar to AA sequence:RefSeq:WP_017649334.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015695738.1
COORDINATES: similar to AA sequence:RefSeq:WP_000066069.1
COORDINATES: similar to AA sequence:RefSeq:WP_017649337.1
COORDINATES: similar to AA sequence:RefSeq:WP_001037295.1
COORDINATES: similar to AA sequence:RefSeq:WP_000071217.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_000651827.1
COORDINATES: similar to AA sequence:RefSeq:WP_001030969.1
COORDINATES: similar to AA sequence:RefSeq:WP_000379151.1
COORDINATES: similar to AA sequence:RefSeq:WP_017768599.1
GO:0009986 - cell surface [Evidence IEA]
LPXTG cell wall anchor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017768598.1
SEC10/PgrA surface exclusion domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017648016.1
COORDINATES: similar to AA sequence:RefSeq:WP_017648017.1
COORDINATES: similar to AA sequence:RefSeq:WP_017643055.1
COORDINATES: similar to AA sequence:RefSeq:WP_000015623.1
COORDINATES: similar to AA sequence:RefSeq:WP_017794538.1
COORDINATES: similar to AA sequence:RefSeq:WP_006531843.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017649315.1
COORDINATES: similar to AA sequence:RefSeq:WP_017648183.1
COORDINATES: similar to AA sequence:RefSeq:WP_000692236.1
COORDINATES: similar to AA sequence:RefSeq:WP_017649321.1
COORDINATES: similar to AA sequence:RefSeq:WP_017649323.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]