Spartinivicinus ruber strain S2-4-1H plasmid pC, complete sequence.
Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Zooshikellaceae; Spartinivicinus.
Spartinivicinus ruber gen. nov., sp. nov., a novel marine bacterium producing both heptylprodigiosin and cycloheptylprodigiosin as major red pigments
Submitted (19-FEB-2020) College of Marine and Food Sciences, Quanzhou Normal University, Donghai Road 398, Quanzhou, Fujian Province 361000, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP048881.1.\nBacteria and source DNA also vailable from MCCC.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.8.0; Celera Assembler v. 1.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio RSII; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/16/2022 03:55:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,129\nCDSs (total) :: 6,048\nGenes (coding) :: 5,951\nCDSs (with protein) :: 5,951\nGenes (RNA) :: 81\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 65\nncRNAs :: 4\nPseudo Genes (total) :: 97\nCDSs (without protein) :: 97\nPseudo Genes (ambiguous residues) :: 0 of 97\nPseudo Genes (frameshifted) :: 22 of 97\nPseudo Genes (incomplete) :: 73 of 97\nPseudo Genes (internal stop) :: 7 of 97\nPseudo Genes (multiple problems) :: 5 of 97\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF037684.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
DnaT-like ssDNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012920.2
COORDINATES: similar to AA sequence:RefSeq:WP_007679039.1
COORDINATES: protein motif:HMM:NF016896.2
COORDINATES: similar to AA sequence:RefSeq:WP_019425667.1
COORDINATES: protein motif:HMM:NF016724.2
COORDINATES: protein motif:HMM:NF020811.2
COORDINATES: similar to AA sequence:RefSeq:WP_013971298.1
COORDINATES: protein motif:HMM:NF022019.2
COORDINATES: similar to AA sequence:RefSeq:WP_020054252.1
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015824.2
COORDINATES: similar to AA sequence:RefSeq:WP_000066484.1
COORDINATES: protein motif:HMM:NF012707.2
transporter substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF015340.2
phage antirepressor KilAC domain-containing protein
COORDINATES: protein motif:HMM:NF018929.2
COORDINATES: protein motif:HMM:NF017673.2
phage terminase large subunit family protein
COORDINATES: protein motif:HMM:TIGR01539.1
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF013506.2
COORDINATES: protein motif:HMM:NF014921.2
COORDINATES: protein motif:HMM:NF018894.2
COORDINATES: protein motif:HMM:NF015802.2
COORDINATES: protein motif:HMM:TIGR01644.1
COORDINATES: protein motif:HMM:NF016736.2
COORDINATES: protein motif:HMM:NF021220.2
GO:0016032 - viral process [Evidence IEA]
COORDINATES: protein motif:HMM:NF023985.2
COORDINATES: protein motif:HMM:NF016845.2
phage tail sheath subtilisin-like domain-containing protein
COORDINATES: protein motif:HMM:NF016846.2
COORDINATES: similar to AA sequence:RefSeq:WP_017477243.1
COORDINATES: protein motif:HMM:NF018260.2
COORDINATES: protein motif:HMM:TIGR01760.1
COORDINATES: protein motif:HMM:NF018674.2
COORDINATES: similar to AA sequence:RefSeq:WP_007550113.1
COORDINATES: protein motif:HMM:NF017739.2
contractile injection system protein, VgrG/Pvc8 family
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011212507.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020651377.1
COORDINATES: similar to AA sequence:RefSeq:WP_009518238.1
COORDINATES: protein motif:HMM:NF018472.2
COORDINATES: similar to AA sequence:RefSeq:WP_015984609.1
COORDINATES: similar to AA sequence:RefSeq:WP_015984613.1
COORDINATES: similar to AA sequence:RefSeq:WP_009844425.1
COORDINATES: similar to AA sequence:RefSeq:WP_015984616.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107378.1
COORDINATES: similar to AA sequence:RefSeq:WP_000239577.1
type II toxin-antitoxin system ChpB family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012776988.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010480487.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF012245.2
COORDINATES: similar to AA sequence:RefSeq:WP_004752411.1
COORDINATES: similar to AA sequence:RefSeq:WP_015767950.1
excalibur calcium-binding domain-containing protein
COORDINATES: protein motif:HMM:NF036558.2
COORDINATES: similar to AA sequence:RefSeq:WP_017707916.1
COORDINATES: similar to AA sequence:RefSeq:WP_001749323.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331104.1
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
type II toxin-antitoxin system HigB family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008733082.1
COORDINATES: similar to AA sequence:RefSeq:WP_019529047.1
COORDINATES: similar to AA sequence:RefSeq:WP_017333791.1
COORDINATES: protein motif:HMM:NF013231.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]