Chlamydiifrater volucris isolate 15-2067_O50 plasmid 1.
type: Entry
definition: Chlamydiifrater volucris isolate 15-2067_O50 plasmid 1.
sequence version: NZ_LR777655.1
sequence date: 2023-05-07
sequence: sequence
division: CON
label: NZ_LR777655.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMEA6565319
keyword: RefSeq
source: Chlamydiifrater volucris
organism: Chlamydiifrater volucris
taxonomy: Bacteria; Chlamydiota; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydiifrater.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nLR777655.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/07/2023 04:25:07\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,034\nCDSs (total) :: 990\nGenes (coding) :: 981\nCDSs (with protein) :: 981\nGenes (RNA) :: 44\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 38\nncRNAs :: 3\nPseudo Genes (total) :: 9\nCDSs (without protein) :: 9\nPseudo Genes (ambiguous residues) :: 0 of 9\nPseudo Genes (frameshifted) :: 0 of 9\nPseudo Genes (incomplete) :: 9 of 9\nPseudo Genes (internal stop) :: 0 of 9\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 6320
topology: linear
so has quality: SO_0000987
location: 1..6320
location: region:1-6320:1
RO_0002162: 2681470

NZ_LR777655
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMEA6565319
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Vorimore, F.
journal: Submitted (19-FEB-2020) ANSES, Unite des zoonoses bacteriennes, 14 rue Pierre et Marie Curie, Maisons-Alfort, 94700, France

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6320:1
position: 6320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

feature:1-6320:1:source
so part of: sequence
organism: Chlamydiifrater volucris
mol type: genomic DNA
isolate: 15-2067_O50
isolation source: cloacal swab
host: Phoenicopterus roseus
type material: type strain of Chlamydiifrater volucris
plasmid: 1
country: France
collection date: 2015-07-15

2681470
type: Taxonomy
SIO_000068: taxonomy

KJA62_RS05145
type: Gene
subclass of: SO_0000704
RO_0002162: 2681470
locus tag: KJA62_RS05145
so part of: sequence
location: 91..867
location: region:91-867:1
so has part: feature:91-867:1:exon
subclass of: SO_0000010

position:91:1
position: 91
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:867:1
position: 867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:91-867:1:exon

KJA62_RS05145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2681470
locus tag: KJA62_RS05145
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014518306.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKVITFCSFKGGTGKTTLSMNVACYLSEKKNKRVLLVDMDPQANLTTYVGISSADSLGSFGLLVNGGQITNFVNKTNKENLDIVPSCVSSEFLRGDLINEDSFLSGNLRTALGESLDYDICIIDTPPSLGFLVRESFSASDSLVVCLSPEPFSVVGLHKIRDLLETLSFPNLKILGTVISFWDARNSTNHLYLKNISSVFSFEVPCYFVRRDISFSRSVLKESPVFSAYPNSRASFDIINFSESIFESVFSEGLENIG
SIO_010081: KJA62_RS05145
subclass of: SO_0000673
so part of: KJA62_RS05145
location: 91..867
location: region:91-867:1
so has part: feature:91-867:1:exon

WP_213318988.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:91-867:1:exon

KJA62_RS05150
type: Gene
subclass of: SO_0000704
RO_0002162: 2681470
locus tag: KJA62_RS05150
so part of: sequence
location: 872..1579
location: region:872-1579:1
so has part: feature:872-1579:1:exon
subclass of: SO_0000010

position:872:1
position: 872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1579:1
position: 1579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:872-1579:1:exon

KJA62_RS05150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2681470
locus tag: KJA62_RS05150
inference: COORDINATES: protein motif:HMM:NF015627.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CT583 family protein
translation: MKKIDKEASDFFQKNRNVSVSKTSSRTDNAISNVVLDDFESEKISEIFSEVDENFSGKIVLIKQLTNQIKGIQKQGVLLIGEKIFKVRKILREIGCFDTSFTKWISLVFPTKSSAYNALAYYELYSSLPDQELRQKFQSIPYKTAYMLASRKADVEKKISVMEIIQGMENDVAITTLNQFIPSSRKDDKSCDRDPLDYLIYKKAYELMILIKKSRNLSPLSKKLLRELFSLSKES
SIO_010081: KJA62_RS05150
subclass of: SO_0000673
so part of: KJA62_RS05150
location: 872..1579
location: region:872-1579:1
so has part: feature:872-1579:1:exon

WP_213318989.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:872-1579:1:exon

KJA62_RS05155
type: Gene
subclass of: SO_0000704
RO_0002162: 2681470
locus tag: KJA62_RS05155
so part of: sequence
location: 1810..2763
location: region:1810-2763:1
so has part: feature:1810-2763:1:exon
subclass of: SO_0000010

position:1810:1
position: 1810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2763:1
position: 2763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1810-2763:1:exon

KJA62_RS05155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2681470
locus tag: KJA62_RS05155
inference: COORDINATES: protein motif:HMM:NF012798.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MNSRLEKEILLRNNKFFLGENWNDLSKIFLIDLINCFLTQLSNEGTRTRYFFCFKRLFMEKILYERFTLNDLKNLNLNARLDSILQINSLSRHSKQTCAAAFLSFFKFLHRETSGLIKVPTPQKTGVSKTFSRVRDKTIYSPISKSDLFKFIEKSYQHSLRIGIFVEMAIQSTRRLSELLDTKFSDVNWLDRTIKFSTVKTQIEKQCIIAFPNRFMKKLEEFRDKFPEKEFIFSTSSGKKLQKDYVWRQLVSISGSCNFSYKVTPHVLRATSICMYREYGFSLGDIVEITGHSSIEMVRYYDKNSFKNNPSCKVALI
SIO_010081: KJA62_RS05155
subclass of: SO_0000673
so part of: KJA62_RS05155
location: 1810..2763
location: region:1810-2763:1
so has part: feature:1810-2763:1:exon

WP_213318990.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1810-2763:1:exon

KJA62_RS05160
type: Gene
subclass of: SO_0000704
RO_0002162: 2681470
locus tag: KJA62_RS05160
so part of: sequence
location: 2760..4154
location: region:2760-4154:1
so has part: feature:2760-4154:1:exon
subclass of: SO_0000010

position:2760:1
position: 2760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4154:1
position: 4154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2760-4154:1:exon

KJA62_RS05160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2681470
locus tag: KJA62_RS05160
inference: COORDINATES: protein motif:HMM:NF015736.2
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DnaB-like helicase C-terminal domain-containing protein
translation: MNLSKQEDTGVREINNHLDIEYFLLGQAVTFSEQAKILVKELEEEHFQKLGHRIVFNAIKTLVLNEKPCNVYFIWEEIRKARQEDKIDSSYVLSLYCDTSNKVEIYCYIDFLQEKLANKKLSDTLQKVSKDFYQHFDRKPTRVLIEELQESLSKIQRRFFSQERTKKESIRDILFSKEREEEPLMGKISLRYEYRQKTQRDFSDSLPTGFLFLDENVSILSEGNYVILAARPSVGKTAFSINLATFLSYQRNIPVGFVSLEMSKNQIAERILSNLCSISSESLKRGSFERSSLEKLEKVGENLKSTPMYILGEECSTISNLISQAKRLKEEYGISILFIDYIQLIRSKTLFENRQNEVAEVSRQLRILASDLKLPIVCLSQLSRRVEERGNKRPIISDLRDSGQIEQDADSVLFLHKKECYENRDIRKTLIELILAKNRHGPVLSGFLNFDVTTGAFHENSKKW
SIO_010081: KJA62_RS05160
subclass of: SO_0000673
so part of: KJA62_RS05160
location: 2760..4154
location: region:2760-4154:1
so has part: feature:2760-4154:1:exon

WP_213318991.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2760-4154:1:exon

KJA62_RS05165
type: Gene
subclass of: SO_0000704
RO_0002162: 2681470
locus tag: KJA62_RS05165
so part of: sequence
location: 4148..5170
location: region:4148-5170:1
so has part: feature:4148-5170:1:exon
subclass of: SO_0000010

position:4148:1
position: 4148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5170:1
position: 5170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4148-5170:1:exon

KJA62_RS05165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2681470
locus tag: KJA62_RS05165
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014518311.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: virulence factor
translation: MVKNQVIKSSLHLENQKFGRKPISFDKDQLEIFSSITESKVEVIGLDLQPSHYHALAAIQKLLTATNYNGNIQSNYLSRETNSFKFEGKVPRIKFSRSEYLEAYGVKRYKTSRNKSEFGGKEALIALEALQHLGSQPHLIIATRKRWEKGVEVIDRYQTFSPIIRIFEGWEGLTLKENEDLEEGNFLNFINRKHKGFIVEPCPILIDQIDSYFILKPANIYQEIKLKFPNASKFTYTFIDWIVSSATRKRISCGKNYNWPEKLEISFENLSYILRMNRYIVSRNWKKIETSIKRCIEIAIDLEWLTMHESLEGKTVSKKEVFYLNKDKFNKISKNNHISF
SIO_010081: KJA62_RS05165
subclass of: SO_0000673
so part of: KJA62_RS05165
location: 4148..5170
location: region:4148-5170:1
so has part: feature:4148-5170:1:exon

WP_213318992.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4148-5170:1:exon

KJA62_RS05170
type: Gene
subclass of: SO_0000704
RO_0002162: 2681470
gene: pgp3
locus tag: KJA62_RS05170
so part of: sequence
location: 5223..6017
location: region:5223-6017:1
so has part: feature:5223-6017:1:exon
subclass of: SO_0000010

position:5223:1
position: 5223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6017:1
position: 6017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5223-6017:1:exon

KJA62_RS05170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2681470
gene: pgp3
locus tag: KJA62_RS05170
inference: COORDINATES: protein motif:HMM:NF017303.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: virulence factor Pgp3
translation: MGDSGFKLTESQNVVFADNIMVGQMTAPLSENQVILGTKLNQRGNSGPIAAKIVSGNGIDVAFPEGNGNNLSFSINADTISEDVLEKIGEKLTESISDSLVDKVIGELEINPNFAIKKAFKTWSFSDIVICDGLFSSSNIKTSSGGTEVCKISITPENSNSVFLFFANIIASRREGTVILSLMQDDEEQPRSFGFGYSNGNPNCCCLNTALYSAKKNPLNLSLRIGGMESGPVVINGMSNGERILGTPVYSTISVLEVTPQKNG
SIO_010081: KJA62_RS05170
subclass of: SO_0000673
so part of: KJA62_RS05170
location: 5223..6017
location: region:5223-6017:1
so has part: feature:5223-6017:1:exon

WP_213318993.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5223-6017:1:exon

KJA62_RS05175
type: Gene
subclass of: SO_0000704
RO_0002162: 2681470
locus tag: KJA62_RS05175
so part of: sequence
location: 6088..>6320
location: region:6088-6320:1
so has part: feature:6088-6320:1:exon
subclass of: SO_0000010

position:6088:1
position: 6088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6088-6320:1:exon

KJA62_RS05175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2681470
locus tag: KJA62_RS05175
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: virulence factor
translation: MNDDSNFQGSFVKIIREVGRDFPELNIKTRISKHRVKILNSPLELYSKSISAILRLTEEIQNSLDYFPDSPLLERLE
SIO_010081: KJA62_RS05175
subclass of: SO_0000673
so part of: KJA62_RS05175
location: 6088..>6320
location: region:6088-6320:1
so has part: feature:6088-6320:1:exon

WP_213318994.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6088-6320:1:exon