Lactobacillus kefiranofaciens strain 1207 plasmid unnamed1, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.
Lactobacillus kefiranofaciens 1207 Genome sequencing and assembly
Submitted (09-SEP-2020) Key Laboratory of Food Nutrition and Safety Ministry of Education, Tianjin University of Science and Technology, 1038 Dagu Nanlu, Hexi Distric, Tianjin, Tianjin 300457, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP061343.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2020\nAssembly Method :: ABySS v. 2.3\nAssembly Name :: UCLA_Agam_2.1 for version 2.1 of the\n Anopheles gambiae genome from a lab in\n UCLA\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 12.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 11:03:42\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,159\nCDSs (total) :: 2,078\nGenes (coding) :: 1,926\nCDSs (with protein) :: 1,926\nGenes (RNA) :: 81\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 63\nncRNAs :: 3\nPseudo Genes (total) :: 152\nCDSs (without protein) :: 152\nPseudo Genes (ambiguous residues) :: 0 of 152\nPseudo Genes (frameshifted) :: 89 of 152\nPseudo Genes (incomplete) :: 37 of 152\nPseudo Genes (internal stop) :: 47 of 152\nPseudo Genes (multiple problems) :: 19 of 152\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_002823702.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024776.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013682708.1
COORDINATES: similar to AA sequence:RefSeq:WP_003627908.1
COORDINATES: similar to AA sequence:RefSeq:WP_011241729.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008212490.1
COORDINATES: similar to AA sequence:RefSeq:WP_010623258.1
GO:0000166 - nucleotide binding [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007745357.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611101.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014567995.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005717340.1
GO:0005518 - collagen binding [Evidence IEA]
collagen binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002346505.1
COORDINATES: similar to AA sequence:RefSeq:WP_003603789.1
COORDINATES: similar to AA sequence:RefSeq:WP_002823700.1
COORDINATES: similar to AA sequence:RefSeq:WP_005693113.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
type II toxin-antitoxin system RelB/DinJ family antitoxin