Lactobacillus kefiranofaciens strain 1207 plasmid unnamed1, complete sequence.
type: Entry
definition: Lactobacillus kefiranofaciens strain 1207 plasmid unnamed1, complete sequence.
sequence version: NZ_CP061343.1
sequence date: 2023-04-28
sequence: sequence
division: CON
label: NZ_CP061343.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN16072876
keyword: RefSeq
source: Lactobacillus kefiranofaciens
organism: Lactobacillus kefiranofaciens
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP061343.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2020\nAssembly Method :: ABySS v. 2.3\nAssembly Name :: UCLA_Agam_2.1 for version 2.1 of the\n Anopheles gambiae genome from a lab in\n UCLA\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 12.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 11:03:42\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,159\nCDSs (total) :: 2,078\nGenes (coding) :: 1,926\nCDSs (with protein) :: 1,926\nGenes (RNA) :: 81\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 63\nncRNAs :: 3\nPseudo Genes (total) :: 152\nCDSs (without protein) :: 152\nPseudo Genes (ambiguous residues) :: 0 of 152\nPseudo Genes (frameshifted) :: 89 of 152\nPseudo Genes (incomplete) :: 37 of 152\nPseudo Genes (internal stop) :: 47 of 152\nPseudo Genes (multiple problems) :: 19 of 152\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 19814
topology: circular
so has quality: SO_0000988
location: 1..19814
location: region:1-19814:1
RO_0002162: 267818

NZ_CP061343
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN16072876
type: BioSample
SIO_000068: biosample

1
title: Lactobacillus kefiranofaciens 1207 Genome sequencing and assembly
author: Wang, Y.
author: Geng, W.
author: Xing, Z.
author: Wang, J.
journal: Unpublished

2
title: Direct Submission
author: Wang, Y.
author: Geng, W.
author: Xing, Z.
author: Wang, J.
journal: Submitted (09-SEP-2020) Key Laboratory of Food Nutrition and Safety Ministry of Education, Tianjin University of Science and Technology, 1038 Dagu Nanlu, Hexi Distric, Tianjin, Tianjin 300457, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19814:1
position: 19814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19814:1:source
so part of: sequence
organism: Lactobacillus kefiranofaciens
mol type: genomic DNA
strain: 1207
isolation source: Kefir
plasmid: unnamed1
country: China:Tianjin
collection date: 2015

267818
type: Taxonomy
SIO_000068: taxonomy

ICI50_RS10570
type: Gene
subclass of: SO_0000704
RO_0002162: 267818
locus tag: ICI50_RS10570
old locus tag: ICI50_10565
pseudo: true
so part of: sequence
location: complement(join(19556..19814,1..>215))
location: region:1-19814:-1
so has part: feature:1-215:-1:exon
so has part: feature:19556-19814:-1:exon
subclass of: SO_0000010

72687966
type: Gene
SIO_000068: ncbigene

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19814:-1
position: 19814
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-215:-1:exon

position:215:-1
position: 215
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 2
SIO_000628: feature:19556-19814:-1:exon

position:19556:-1
position: 19556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ICI50_RS10570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 267818
locus tag: ICI50_RS10570
old locus tag: ICI50_10565
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002823702.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: plasmid replication initiation protein
SIO_010081: ICI50_RS10570
subclass of: SO_0000673
so part of: ICI50_RS10570
location: complement(join(19556..19814,1..>215))
location: region:1-19814:-1
so has part: feature:1-215:-1:exon
so has part: feature:19556-19814:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1-215:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:19556-19814:-1:exon

ICI50_RS10575
type: Gene
subclass of: SO_0000704
RO_0002162: 267818
locus tag: ICI50_RS10575
old locus tag: ICI50_10570
so part of: sequence
location: 964..1323
location: region:964-1323:1
so has part: feature:964-1323:1:exon
subclass of: SO_0000010

72687967
type: Gene
SIO_000068: ncbigene

position:964:1
position: 964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1323:1
position: 1323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:964-1323:1:exon

ICI50_RS10575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 267818
locus tag: ICI50_RS10575
old locus tag: ICI50_10570
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNPATGSCIVGSCFTSKKVPKIVIAVLLEINIKSNNQYGNQQQDPEELKALKELGIETDKLQNEITNTLRRVLNARRRMSDNGTDFNTENYLFGAFKRMFADYAEKVIEKREKLQSEWN
SIO_010081: ICI50_RS10575
subclass of: SO_0000673
so part of: ICI50_RS10575
location: 964..1323
location: region:964-1323:1
so has part: feature:964-1323:1:exon

WP_188892158.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:964-1323:1:exon

ICI50_RS10580
type: Gene
subclass of: SO_0000704
RO_0002162: 267818
locus tag: ICI50_RS10580
old locus tag: ICI50_10575
so part of: sequence
location: 1368..1496
location: region:1368-1496:1
so has part: feature:1368-1496:1:exon
subclass of: SO_0000010

72687968
type: Gene
SIO_000068: ncbigene

position:1368:1
position: 1368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1496:1
position: 1496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1368-1496:1:exon

ICI50_RS10580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 267818
locus tag: ICI50_RS10580
old locus tag: ICI50_10575
inference: COORDINATES: protein motif:HMM:NF024776.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MSKKMYTVADIAKITGYNRSTVTRWLDKQRTKKAHKLGFFSS
SIO_010081: ICI50_RS10580
subclass of: SO_0000673
so part of: ICI50_RS10580
location: 1368..1496
location: region:1368-1496:1
so has part: feature:1368-1496:1:exon

WP_188892160.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1368-1496:1:exon

ICI50_RS10585
type: Gene
subclass of: SO_0000704
RO_0002162: 267818
locus tag: ICI50_RS10585
old locus tag: ICI50_10580
so part of: sequence
location: complement(1515..2165)
location: region:1515-2165:-1
so has part: feature:1515-2165:-1:exon
subclass of: SO_0000010

72687969
type: Gene
SIO_000068: ncbigene

position:1515:-1
position: 1515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2165:-1
position: 2165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1515-2165:-1:exon

ICI50_RS10585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 267818
locus tag: ICI50_RS10585
old locus tag: ICI50_10580
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013682708.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKTKKFIRSRRISAILPWIGMLGMLYLVFSLIMHGLLAFIINLGFIANFYYIIDEYNWLIERISFDSQRLIANKRMGINRLVMIVSIVIAVLNTIILILLKRQDFISFFVGLCFISEIYFVSRLIENFQVILHIAFDSWKKFYILVVIGTAVSSSVYLLLLCFSIIAYFIYFAIIGIMYVITYYILIEIHDRVENDLGGHKYFIDLPDNRFVKRF
SIO_010081: ICI50_RS10585
subclass of: SO_0000673
so part of: ICI50_RS10585
location: complement(1515..2165)
location: region:1515-2165:-1
so has part: feature:1515-2165:-1:exon

WP_188892161.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1515-2165:-1:exon

ICI50_RS10590
type: Gene
subclass of: SO_0000704
RO_0002162: 267818
locus tag: ICI50_RS10590
old locus tag: ICI50_10585
so part of: sequence
location: complement(2228..2491)
location: region:2228-2491:-1
so has part: feature:2228-2491:-1:exon
subclass of: SO_0000010

72687970
type: Gene
SIO_000068: ncbigene

position:2228:-1
position: 2228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2491:-1
position: 2491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2228-2491:-1:exon

ICI50_RS10590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 267818
locus tag: ICI50_RS10590
old locus tag: ICI50_10585
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKNNKKINLVLIFIKKVIIIILIILIKILGGNLMKKLFLSLVVLASVGAGLFAGTQTKVSAATYRVNHHFIYTLPGGDCGQHNGQN
SIO_010081: ICI50_RS10590
subclass of: SO_0000673
so part of: ICI50_RS10590
location: complement(2228..2491)
location: region:2228-2491:-1
so has part: feature:2228-2491:-1:exon

WP_188892165.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2228-2491:-1:exon

ICI50_RS10595
type: Gene
subclass of: SO_0000704
RO_0002162: 267818
locus tag: ICI50_RS10595
old locus tag: ICI50_10590
so part of: sequence
location: complement(2484..3062)
location: region:2484-3062:-1
so has part: feature:2484-3062:-1:exon
subclass of: SO_0000010

72687971
type: Gene
SIO_000068: ncbigene

position:2484:-1
position: 2484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3062:-1
position: 3062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2484-3062:-1:exon

ICI50_RS10595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 267818
locus tag: ICI50_RS10595
old locus tag: ICI50_10590
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003627908.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGKTVREIAELMGIPSDDLVKEKQRIRDEIKRQNIETKKSGNKFFIADSDVEKITSALKEKLDKEDSKKKEDNEELLQMIEQLKAENSKLKSENKEKDEELVRINLKKDEEIRRFNSKIEKYADDFKEFNDKQLQLNNQQQQLQAKILEQTTQLKDSQQKLLDSAEKSSELQDKVDKIENASLWQRITRKFD
SIO_010081: ICI50_RS10595
subclass of: SO_0000673
so part of: ICI50_RS10595
location: complement(2484..3062)
location: region:2484-3062:-1
so has part: feature:2484-3062:-1:exon

WP_188892163.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2484-3062:-1:exon

ICI50_RS10600
type: Gene
subclass of: SO_0000704
RO_0002162: 267818
locus tag: ICI50_RS10600
old locus tag: ICI50_10595
so part of: sequence
location: complement(3967..4317)
location: region:3967-4317:-1
so has part: feature:3967-4317:-1:exon
subclass of: SO_0000010

72687972
type: Gene
SIO_000068: ncbigene

position:3967:-1
position: 3967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4317:-1
position: 4317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3967-4317:-1:exon

ICI50_RS10600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 267818
locus tag: ICI50_RS10600
old locus tag: ICI50_10595
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKNKSDVDLNNLEGDFNKSTKTPKKLVKGGRLGLYPIGMQIYRRSRRGIVQPAKFKGRKKDIKQKYQIDVLPEYYRSFDVKHREDGETFTIQTEYYSRKKAKLEKALQKIKNYSEK
SIO_010081: ICI50_RS10600
subclass of: SO_0000673
so part of: ICI50_RS10600
location: complement(3967..4317)
location: region:3967-4317:-1
so has part: feature:3967-4317:-1:exon

WP_188892164.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3967-4317:-1:exon

ICI50_RS10605
type: Gene
subclass of: SO_0000704
RO_0002162: 267818
locus tag: ICI50_RS10605
old locus tag: ICI50_10600
pseudo: true
so part of: sequence
location: complement(<4437..5354)
location: region:4437-5354:-1
so has part: feature:4437-5354:-1:exon
subclass of: SO_0000010

72687973
type: Gene
SIO_000068: ncbigene

position:4437:-1
position: 4437
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:5354:-1
position: 5354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4437-5354:-1:exon

ICI50_RS10605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 267818
locus tag: ICI50_RS10605
old locus tag: ICI50_10600
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011241729.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: replication initiator protein A
SIO_010081: ICI50_RS10605
subclass of: SO_0000673
so part of: ICI50_RS10605
location: complement(<4437..5354)
location: region:4437-5354:-1
so has part: feature:4437-5354:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4437-5354:-1:exon

ICI50_RS10610
type: Gene
subclass of: SO_0000704
RO_0002162: 267818
locus tag: ICI50_RS10610
old locus tag: ICI50_10605
so part of: sequence
location: complement(5899..6174)
location: region:5899-6174:-1
so has part: feature:5899-6174:-1:exon
subclass of: SO_0000010

72687974
type: Gene
SIO_000068: ncbigene

position:5899:-1
position: 5899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6174:-1
position: 6174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5899-6174:-1:exon

ICI50_RS10610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 267818
locus tag: ICI50_RS10610
old locus tag: ICI50_10605
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008212490.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGKVKTLNVRLNPEKIVDKEILDYFDKSLIPKTTLVKTALIHEIERLKAQGDPYVKDELKAPEAPKNSTESPSDSKERLQGGFNAFSDNDI
SIO_010081: ICI50_RS10610
subclass of: SO_0000673
so part of: ICI50_RS10610
location: complement(5899..6174)
location: region:5899-6174:-1
so has part: feature:5899-6174:-1:exon

WP_003625713.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5899-6174:-1:exon

ICI50_RS10615
type: Gene
subclass of: SO_0000704
RO_0002162: 267818
locus tag: ICI50_RS10615
old locus tag: ICI50_10610
so part of: sequence
location: complement(6177..7226)
location: region:6177-7226:-1
so has part: feature:6177-7226:-1:exon
subclass of: SO_0000010

72687975
type: Gene
SIO_000068: ncbigene

position:6177:-1
position: 6177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7226:-1
position: 7226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6177-7226:-1:exon

ICI50_RS10615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 267818
locus tag: ICI50_RS10615
old locus tag: ICI50_10610
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010623258.1
GO function: GO:0000166 - nucleotide binding [Evidence IEA]
GO process: GO:0030541 - plasmid partitioning [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParM/StbA family protein
translation: MDIFSLDLGNKQTKLKSSKAEYVLPSRYLNQADMPMSVGNSTMNNDLHTYSVPFSDDKYVWGRDIDRLHLDEYLADTIMYGARYNSEAFKLLANFALGLLASDFKAAKDQVLEVVVTAGLPTGDYAEQGQLKALLKVLEGQHQVTIDDKIVTVRVRKVYILPQPIGTLYNELLDDEGFIQNKDLLDEKVGIVDVGGGTILIDTILNFELSGKNRHQFNTGVNDLYEAIANGINGDTSLYQLEKDLRKGNQQHHWSYRFSKNRQDDITDLVCKEIDRFTRRLVANVTSTLKNLNSIDTLFFTGGGANLLNQKILNTTFTNAVIVKNTEVANVNGFYKYGLSQQAQNEGSK
SIO_010081: ICI50_RS10615
subclass of: SO_0000673
so part of: ICI50_RS10615
location: complement(6177..7226)
location: region:6177-7226:-1
so has part: feature:6177-7226:-1:exon

WP_086989834.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6177-7226:-1:exon

ICI50_RS10620
type: Gene
subclass of: SO_0000704
RO_0002162: 267818
locus tag: ICI50_RS10620
old locus tag: ICI50_10615
so part of: sequence
location: complement(7666..7866)
location: region:7666-7866:-1
so has part: feature:7666-7866:-1:exon
subclass of: SO_0000010

72687976
type: Gene
SIO_000068: ncbigene

position:7666:-1
position: 7666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7866:-1
position: 7866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7666-7866:-1:exon

ICI50_RS10620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 267818
locus tag: ICI50_RS10620
old locus tag: ICI50_10615
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTQAVAAGAVGGLGALIANYVSGGLATFAVGAISSSVSALVGSSIKGGVWVDYNFLARTITSCGWQ
SIO_010081: ICI50_RS10620
subclass of: SO_0000673
so part of: ICI50_RS10620
location: complement(7666..7866)
location: region:7666-7866:-1
so has part: feature:7666-7866:-1:exon

WP_013855364.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7666-7866:-1:exon

ICI50_RS10625
type: Gene
subclass of: SO_0000704
RO_0002162: 267818
locus tag: ICI50_RS10625
old locus tag: ICI50_10620
so part of: sequence
location: complement(8063..9655)
location: region:8063-9655:-1
so has part: feature:8063-9655:-1:exon
subclass of: SO_0000010

72687977
type: Gene
SIO_000068: ncbigene

position:8063:-1
position: 8063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9655:-1
position: 9655
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8063-9655:-1:exon

ICI50_RS10625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 267818
locus tag: ICI50_RS10625
old locus tag: ICI50_10620
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007745357.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MLIYFKKFKLEVFIALSSIILYSFSKVIAAVISTNVLNSLIQLNIKKFLFYLLLELICWIIFAFFAYLMTISTALATQKMSLCLKEKIGQNISMQNYMDFHSKDTGDYSSWLSNDVTMIENNGFAKVFDLMTIISDTLISGVALIHYNWSLIITVCFLSFITVALPQILNKKIQLESVAVSTANEKFIAGINDLLRGFDTLYAFNMTQKLEQIIKKNGKVVKNKKVQLAKTTGSATSIAVLCNLLGQLGTQGWTGFLAIQRIVSIGSIFSTGTLASSIFNDLSQVGPVLNNIKSVKPLFKKYDLKSIDDSNKLLKINNNPNIDIKNMSFRYSQNEKPLFNNLSISIPFSSKVIISGESGCGKSTLLNIIGGKIFPYEGSIKIGNKELRDISTVILRKKIVYLDQIPNIFTGSIRYNLTLGEKFSDEELWEALNKSQLKDFVKKLDKGLDSFVGEKGQLFSGGQRQRLALARGLLRKPQILLVDEGTNSLSQDVAIQIEEQLVMLNDLTVIFVTHQLHTEVIKKFDQIIKL
SIO_010081: ICI50_RS10625
subclass of: SO_0000673
so part of: ICI50_RS10625
location: complement(8063..9655)
location: region:8063-9655:-1
so has part: feature:8063-9655:-1:exon

WP_013855363.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8063-9655:-1:exon

ICI50_RS10990
type: Gene
subclass of: SO_0000704
RO_0002162: 267818
locus tag: ICI50_RS10990
so part of: sequence
location: complement(9764..9892)
location: region:9764-9892:-1
so has part: feature:9764-9892:-1:exon
subclass of: SO_0000010

80427525
type: Gene
SIO_000068: ncbigene

position:9764:-1
position: 9764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9892:-1
position: 9892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9764-9892:-1:exon

ICI50_RS10990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 267818
locus tag: ICI50_RS10990
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKSLTLLDLDNVQARKGNATKLFTIKVCGAGGITCFKDEDRF
SIO_010081: ICI50_RS10990
subclass of: SO_0000673
so part of: ICI50_RS10990
location: complement(9764..9892)
location: region:9764-9892:-1
so has part: feature:9764-9892:-1:exon

WP_257796677.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9764-9892:-1:exon

ICI50_RS10630
type: Gene
subclass of: SO_0000704
RO_0002162: 267818
locus tag: ICI50_RS10630
old locus tag: ICI50_10625
so part of: sequence
location: 10007..10762
location: region:10007-10762:1
so has part: feature:10007-10762:1:exon
subclass of: SO_0000010

72687978
type: Gene
SIO_000068: ncbigene

position:10007:1
position: 10007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10762:1
position: 10762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10007-10762:1:exon

ICI50_RS10630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 267818
locus tag: ICI50_RS10630
old locus tag: ICI50_10625
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIYNLINLLNLNNIQGSYSFQHDSMWLYCYPKQLKMLNQGWKIHISCYLHDFKKVLTKIMPIIIKYHCFFKVPIREHAFLSLLYGGKPYEETGKIITIYPSQSNQLEKILNELYFAMPNVKYSKIPTDYSFKNSNIFIRYGAFSDKLSYLDDTGIIHSAIKDDKNKPVIDERKVGRYCPKFINLPNFLPKNNVEYNLDLTSIGITNPILLSRKPGCSVYEIKYNHKPAIMKLAFKNSVLDFMSRDGISHAR
SIO_010081: ICI50_RS10630
subclass of: SO_0000673
so part of: ICI50_RS10630
location: 10007..10762
location: region:10007-10762:1
so has part: feature:10007-10762:1:exon

WP_054640660.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10007-10762:1:exon

ICI50_RS10635
type: Gene
subclass of: SO_0000704
RO_0002162: 267818
locus tag: ICI50_RS10635
old locus tag: ICI50_10630
so part of: sequence
location: 10914..11420
location: region:10914-11420:1
so has part: feature:10914-11420:1:exon
subclass of: SO_0000010

72687979
type: Gene
SIO_000068: ncbigene

position:10914:1
position: 10914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11420:1
position: 11420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10914-11420:1:exon

ICI50_RS10635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 267818
locus tag: ICI50_RS10635
old locus tag: ICI50_10630
inference: COORDINATES: protein motif:HMM:NF019310.2
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MFS transporter
translation: MQVGVPYIVVNKLNKSTEVSGNLQGLLSWGVFLGGILVTLIAFKNELKALKLIYFINFIVLALLGISVEWLPINIIIIFAIFEFILGLINGIADPPFFTYIQSVVPKESLGQVNTYLYTIVQLLTPFGILIYSILIESVEFQLLFLLNGFIALIIALVLLKVLKIVKE
SIO_010081: ICI50_RS10635
subclass of: SO_0000673
so part of: ICI50_RS10635
location: 10914..11420
location: region:10914-11420:1
so has part: feature:10914-11420:1:exon

WP_056940805.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10914-11420:1:exon

ICI50_RS10640
type: Gene
subclass of: SO_0000704
RO_0002162: 267818
locus tag: ICI50_RS10640
old locus tag: ICI50_10635
so part of: sequence
location: complement(11515..12372)
location: region:11515-12372:-1
so has part: feature:11515-12372:-1:exon
subclass of: SO_0000010

72687980
type: Gene
SIO_000068: ncbigene

position:11515:-1
position: 11515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12372:-1
position: 12372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11515-12372:-1:exon

ICI50_RS10640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 267818
locus tag: ICI50_RS10640
old locus tag: ICI50_10635
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611101.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS982 family transposase
translation: MNYLKLKRFSHHLQVSFSRLNMICRSWYKLYAPDSLKHRRNTDQTKISDSSILAMLIWQAELGIESQRRFCKFLVGLSHSRFNRRSRQLLPLIYLIRHVLNQEVDLSGKILIIDSFPVPVCQPVRNYRVKIFHDMADIGYKATKKVYYYGFKVHAIVSDDGYLLDYAVTKASVHDAKETTELMANAHPVNHYLLGDEGYLGKDLAFKLKQMGYKLWTPYHKNMQGAKEHNDHQLMAIRRTIESDFSLLSYYNAENNRARSLTGFQERLEVAVLAYNMAYCLERFN
SIO_010081: ICI50_RS10640
subclass of: SO_0000673
so part of: ICI50_RS10640
location: complement(11515..12372)
location: region:11515-12372:-1
so has part: feature:11515-12372:-1:exon

WP_095342490.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11515-12372:-1:exon

ICI50_RS10645
type: Gene
subclass of: SO_0000704
RO_0002162: 267818
locus tag: ICI50_RS10645
old locus tag: ICI50_10640
so part of: sequence
location: complement(12475..13059)
location: region:12475-13059:-1
so has part: feature:12475-13059:-1:exon
subclass of: SO_0000010

72687981
type: Gene
SIO_000068: ncbigene

position:12475:-1
position: 12475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13059:-1
position: 13059
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12475-13059:-1:exon

ICI50_RS10645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 267818
locus tag: ICI50_RS10645
old locus tag: ICI50_10640
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014567995.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MAKIGYARVSSKEQHLDRQLAALKDVDKLFTDKLSGATTNRPELQKMLAYIREGDIVMVTELDRLGRNNQDLTKIMNTIQNKGATLDVLNLPSMTGIADPNLRQLMTNLIIELYKYQAESERKRIIERQQQGIALAKQQGKYHGRKPQYTQDDPRLQHAFKLYEAGMSDVDVARNTGIKRTTFIRYRKKFNIKR
SIO_010081: ICI50_RS10645
subclass of: SO_0000673
so part of: ICI50_RS10645
location: complement(12475..13059)
location: region:12475-13059:-1
so has part: feature:12475-13059:-1:exon

WP_188892148.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12475-13059:-1:exon

ICI50_RS10650
type: Gene
subclass of: SO_0000704
RO_0002162: 267818
locus tag: ICI50_RS10650
old locus tag: ICI50_10645
so part of: sequence
location: 13517..16651
location: region:13517-16651:1
so has part: feature:13517-16651:1:exon
subclass of: SO_0000010

72687982
type: Gene
SIO_000068: ncbigene

position:13517:1
position: 13517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16651:1
position: 16651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13517-16651:1:exon

ICI50_RS10650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 267818
locus tag: ICI50_RS10650
old locus tag: ICI50_10645
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005717340.1
GO function: GO:0005518 - collagen binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: collagen binding domain-containing protein
translation: MSNKSRHRRLLFMMGLVLFSLLGLIWISSNNGMTVYADSKTNITQNGTGSGSVINQHEEQQTSTVNSNTTDNTNSSDDQTSQKPVTNTEAQPRAPAEQNGTGSVINQHEEQQISTVNSNTTDNTNSSDDQTSQKPVTNTEAQPRAPAEQNGTGSVINQHEEQQISTVNSNTTDNTNSSDDQTSQKPVTNTEAQPRAPAEQNNMSMYRSMFISMLSERPNLVNNITNTKEDDRDWGDQFITKVELQDENGNPKTNFGIHDNMQAAWNFVIPANKAKSGDTMTVAIPSVLTLATMTKFDIPDAGGTVIGHAVANPNTGKVTITLTDAVKNNHNAITGGFKLWVNWNSSKVKQDTTVPVNSSNSGSTGSTDIHINPSNGPDPNEVLNKWGWYDTNNPYIIHWRVRINYAGKTINQAVYTDRVDDNQALVPGSVSVYKVNPHSDGSNFNILSTYPSSSTIENGTSGFTTTLGDISSQVVIDYKTKITNNGISGHYKNNGKLAGSNIEKQTIDVYSPINGGGGNADTTTTISGTKTWNDNNNQDGIRPSSITVNLLANGRQVASKKVSASDNWQYSFDNLAAYANGQKITYTVTENAAAGYTSTVDDYYNITNTHKPTTPKPQVPNKPTKPVVPTKPVVPTKPVVPTKPVVPTKPTKPVVPAKPAKPVVPTKPAKPVVPTKPVVPTKPVVPTKPVVPTKPVVPTKPVVPTKPVVPTKPAKPVVPAKPVVPAKPAKPVVPTKPVVPTKPVVPTKPAKPVVPTKPTKPVVPAKPAKPVVPTKPTKPVVPAKPAKPVVPTKPAKPVVPTKPVVPTKPVVPTKPVVPTKPVVPTKPVVPTKPAKPVVPAKPVVPTKPAKPVVPAKPVVPAKPAKPVVPAKPVVPAKPVVPAKPAKPVVPAKPVVPTKPVVPTKPVVPTKPVVPTKPVVPTKPVVPTKPVVPAKPTTPKPQVPNKPTTPKPQVSNKPTTPKKPQVPNTTTPKKPQVPNTTTPKKPQVPNNGNKVTPKAYTQGKTYEKTGKLPQTGDKSSMGMMLIGLVTLLLSLGLVVISRFTI
SIO_010081: ICI50_RS10650
subclass of: SO_0000673
so part of: ICI50_RS10650
location: 13517..16651
location: region:13517-16651:1
so has part: feature:13517-16651:1:exon

WP_188892150.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13517-16651:1:exon

ICI50_RS10655
type: Gene
subclass of: SO_0000704
RO_0002162: 267818
locus tag: ICI50_RS10655
old locus tag: ICI50_10650
pseudo: true
so part of: sequence
location: complement(17234..>18214)
location: region:17234-18214:-1
so has part: feature:17234-18214:-1:exon
subclass of: SO_0000010

72687983
type: Gene
SIO_000068: ncbigene

position:17234:-1
position: 17234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18214:-1
position: 18214
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17234-18214:-1:exon

ICI50_RS10655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 267818
locus tag: ICI50_RS10655
old locus tag: ICI50_10650
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002346505.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: ICI50_RS10655
subclass of: SO_0000673
so part of: ICI50_RS10655
location: complement(17234..>18214)
location: region:17234-18214:-1
so has part: feature:17234-18214:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17234-18214:-1:exon

ICI50_RS10660
type: Gene
subclass of: SO_0000704
RO_0002162: 267818
locus tag: ICI50_RS10660
old locus tag: ICI50_10655
so part of: sequence
location: 18251..18529
location: region:18251-18529:1
so has part: feature:18251-18529:1:exon
subclass of: SO_0000010

72687984
type: Gene
SIO_000068: ncbigene

position:18251:1
position: 18251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18529:1
position: 18529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18251-18529:1:exon

ICI50_RS10660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 267818
locus tag: ICI50_RS10660
old locus tag: ICI50_10655
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003603789.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPNQYEKLVEQQARLKQKIEREDFKLRQSKYYENRQARKARSRRLIQKGALLEKYFQANNLSVEQTEELLNIFADYVNAHKPDKLKNDQPNN
SIO_010081: ICI50_RS10660
subclass of: SO_0000673
so part of: ICI50_RS10660
location: 18251..18529
location: region:18251-18529:1
so has part: feature:18251-18529:1:exon

WP_188892152.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18251-18529:1:exon

ICI50_RS10665
type: Gene
subclass of: SO_0000704
RO_0002162: 267818
locus tag: ICI50_RS10665
old locus tag: ICI50_10660
so part of: sequence
location: complement(18519..19025)
location: region:18519-19025:-1
so has part: feature:18519-19025:-1:exon
subclass of: SO_0000010

72687985
type: Gene
SIO_000068: ncbigene

position:18519:-1
position: 18519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19025:-1
position: 19025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18519-19025:-1:exon

ICI50_RS10665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 267818
locus tag: ICI50_RS10665
old locus tag: ICI50_10660
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002823700.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRTNDLVSLYVSFVETNGGKSRPVLIRRVSEQMVEAFKITSQYEKKSAYIKQQYYPIQDWQSAGLKKPSWVDLGNIYRFPKAGLNFKEIGHLSKLDQNKISDFTLDLKSKRRGKGQKIIQQRSSKRKHKESKAELTQRIQKQLKDFAKHNPEIKPKNNPENKNDRPSY
SIO_010081: ICI50_RS10665
subclass of: SO_0000673
so part of: ICI50_RS10665
location: complement(18519..19025)
location: region:18519-19025:-1
so has part: feature:18519-19025:-1:exon

WP_188892154.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18519-19025:-1:exon

ICI50_RS10670
type: Gene
subclass of: SO_0000704
RO_0002162: 267818
locus tag: ICI50_RS10670
old locus tag: ICI50_10665
so part of: sequence
location: complement(19015..19296)
location: region:19015-19296:-1
so has part: feature:19015-19296:-1:exon
subclass of: SO_0000010

72687986
type: Gene
SIO_000068: ncbigene

position:19015:-1
position: 19015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19296:-1
position: 19296
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19015-19296:-1:exon

ICI50_RS10670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 267818
locus tag: ICI50_RS10670
old locus tag: ICI50_10665
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005693113.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MAVKEKKRVQVKIDKDLADDTEAVLSELGLNPTTAINMFYKRIVANGALPFNASLSEEERANLRFLKATEGTPVTEFKDAKEVADWLNDPDED
SIO_010081: ICI50_RS10670
subclass of: SO_0000673
so part of: ICI50_RS10670
location: complement(19015..19296)
location: region:19015-19296:-1
so has part: feature:19015-19296:-1:exon

WP_002819873.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19015-19296:-1:exon