Sulfuriferula nivalis strain SGTM plasmid SGTM_pl2, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Nitrosomonadales; Sulfuricellaceae; Sulfuriferula.
Sulfuriferula nivalis sp. nov., a sulfur oxidizer isolated from snow and emended description of Sulfuriferula plumbiphila
Submitted (19-NOV-2019) Contact:Hisaya Kojima Hokkaido University; Kita-19, Nishi-8, Kita-ku, Sapporo 060-0819, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP021883.1.\nAnnotated at DFAST https://dfast.nig.ac.jp/\n\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS_HGAP_Assembly v. 3\nGenome Coverage :: 255x\nSequencing Technology :: PacBio SMRT\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/31/2022 02:06:52\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,364\nCDSs (total) :: 3,303\nGenes (coding) :: 3,278\nCDSs (with protein) :: 3,278\nGenes (RNA) :: 61\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 4\nPseudo Genes (total) :: 25\nCDSs (without protein) :: 25\nPseudo Genes (ambiguous residues) :: 0 of 25\nPseudo Genes (frameshifted) :: 5 of 25\nPseudo Genes (incomplete) :: 21 of 25\nPseudo Genes (internal stop) :: 1 of 25\nPseudo Genes (multiple problems) :: 2 of 25\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Japan:Hokkaido, Mt. Asahidake, Lake Sugatami
COORDINATES: similar to AA sequence:RefSeq:WP_018004518.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
efflux transporter outer membrane subunit
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: similar to AA sequence:RefSeq:WP_019897592.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011062359.1
GO:0015444 - P-type magnesium transporter activity [Evidence IEA]
GO:0015693 - magnesium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008952712.1
COORDINATES: similar to AA sequence:RefSeq:WP_001247892.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012382731.1
COORDINATES: similar to AA sequence:RefSeq:WP_019897068.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014028940.1
COORDINATES: protein motif:HMM:NF013555.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
topoisomerase DNA-binding C4 zinc finger domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011798610.1
COORDINATES: similar to AA sequence:RefSeq:WP_004845038.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344173.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007586016.1
COORDINATES: similar to AA sequence:RefSeq:WP_010110092.1
COORDINATES: similar to AA sequence:RefSeq:WP_006707425.1
COORDINATES: similar to AA sequence:RefSeq:WP_005369979.1
COORDINATES: similar to AA sequence:RefSeq:WP_021138877.1
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004273221.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter