Sulfuriferula nivalis strain SGTM plasmid SGTM_pl1, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Nitrosomonadales; Sulfuricellaceae; Sulfuriferula.
Sulfuriferula nivalis sp. nov., a sulfur oxidizer isolated from snow and emended description of Sulfuriferula plumbiphila
Submitted (19-NOV-2019) Contact:Hisaya Kojima Hokkaido University; Kita-19, Nishi-8, Kita-ku, Sapporo 060-0819, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP021882.1.\nAnnotated at DFAST https://dfast.nig.ac.jp/\n\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS_HGAP_Assembly v. 3\nGenome Coverage :: 255x\nSequencing Technology :: PacBio SMRT\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/31/2022 02:06:52\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,364\nCDSs (total) :: 3,303\nGenes (coding) :: 3,278\nCDSs (with protein) :: 3,278\nGenes (RNA) :: 61\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 4\nPseudo Genes (total) :: 25\nCDSs (without protein) :: 25\nPseudo Genes (ambiguous residues) :: 0 of 25\nPseudo Genes (frameshifted) :: 5 of 25\nPseudo Genes (incomplete) :: 21 of 25\nPseudo Genes (internal stop) :: 1 of 25\nPseudo Genes (multiple problems) :: 2 of 25\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Japan:Hokkaido, Mt. Asahidake, Lake Sugatami
COORDINATES: similar to AA sequence:RefSeq:WP_017173693.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011798593.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182947.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006890625.1
autoinducer binding domain-containing protein
COORDINATES: protein motif:HMM:NF027570.2
COORDINATES: similar to AA sequence:RefSeq:WP_012536897.1
COORDINATES: similar to AA sequence:RefSeq:WP_007865926.1
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
succinylglutamate desuccinylase/aspartoacylase family protein
COORDINATES: protein motif:HMM:NF014298.2
COORDINATES: protein motif:HMM:NF014609.2
PhzF family phenazine biosynthesis protein
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013429.2
COORDINATES: protein motif:HMM:TIGR00838.1
GO:0004056 - argininosuccinate lyase activity [Evidence IEA]
GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
COORDINATES: protein motif:HMM:NF014805.2
COORDINATES: similar to AA sequence:RefSeq:WP_019401968.1
COORDINATES: protein motif:HMM:NF012509.2
COORDINATES: protein motif:HMM:NF025871.2
iron-containing redox enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003263286.1
COORDINATES: similar to AA sequence:RefSeq:WP_003090771.1
COORDINATES: similar to AA sequence:RefSeq:WP_019883228.1
COORDINATES: protein motif:HMM:NF019498.2
COORDINATES: similar to AA sequence:RefSeq:WP_012703131.1
COORDINATES: similar to AA sequence:RefSeq:WP_012703130.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_011361875.1
COORDINATES: similar to AA sequence:RefSeq:WP_009206765.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_019950110.1
COORDINATES: similar to AA sequence:RefSeq:WP_020701937.1
type VI secretion system Vgr family protein
COORDINATES: protein motif:HMM:NF024894.2
COORDINATES: protein motif:HMM:NF023173.2
COORDINATES: similar to AA sequence:RefSeq:WP_011137537.1
COORDINATES: similar to AA sequence:RefSeq:WP_010089041.1
putative addiction module antidote protein
COORDINATES: similar to AA sequence:RefSeq:WP_000286964.1
COORDINATES: similar to AA sequence:RefSeq:WP_021138877.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005369979.1
COORDINATES: similar to AA sequence:RefSeq:WP_006707425.1
COORDINATES: similar to AA sequence:RefSeq:WP_010110092.1
COORDINATES: protein motif:HMM:NF012451.2
COORDINATES: similar to AA sequence:RefSeq:WP_004090697.1
type II toxin-antitoxin system MqsA family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_010894925.1
type II toxin-antitoxin system MqsR family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_014028384.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017157756.1