Corynebacterium occultum strain 2039 plasmid pCOCCU, complete sequence.
Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.
Complete genome sequence of Corynebacterium kalinowskii 1959, a novel Corynebacterium species isolated from soil of a small paddock in Vilsendorf, Germany
Submitted (26-NOV-2019) CeBiTec, Uni Bielefeld, Sequenz 1, Bielefeld 33615, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP046456.1.\nAnnotated using prokka v1.11 from http://www.vicbioinformatics.com.\nBacteria and source DNA available from Kalinowski Lab, CeBiTec,\nBielefeld University, Bielefeld.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.8; canu v. 1.8; unicycler v.\n 0.4.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 233.7x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore GridION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/23/2022 02:48:25\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,916\nCDSs (total) :: 2,837\nGenes (coding) :: 2,805\nCDSs (with protein) :: 2,805\nGenes (RNA) :: 79\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 3\nPseudo Genes (total) :: 32\nCDSs (without protein) :: 32\nPseudo Genes (ambiguous residues) :: 0 of 32\nPseudo Genes (frameshifted) :: 14 of 32\nPseudo Genes (incomplete) :: 24 of 32\nPseudo Genes (internal stop) :: 7 of 32\nPseudo Genes (multiple problems) :: 11 of 32\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011074819.1
GO:0004803 - transposase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015995.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011015093.1
COORDINATES: similar to AA sequence:RefSeq:WP_006357777.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_011754299.1
aromatic-ring-hydroxylating dioxygenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_006357779.1
COORDINATES: protein motif:HMM:NF012345.2
COORDINATES: similar to AA sequence:RefSeq:WP_006357781.1
COORDINATES: similar to AA sequence:RefSeq:WP_011754303.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011754304.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019342.2
GO:0016787 - hydrolase activity [Evidence IEA]
Members of this family of hydrolases with an active site Cys residue belong to MEROPS family C26; Derived by automated computational analysis using gene prediction method: Protein Homology.
gamma-glutamyl-gamma-aminobutyrate hydrolase family protein
COORDINATES: protein motif:HMM:NF019322.2
COORDINATES: similar to AA sequence:RefSeq:WP_017944264.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018017343.1
COORDINATES: protein motif:HMM:NF014010.2
COORDINATES: similar to AA sequence:RefSeq:WP_015401658.1
COORDINATES: similar to AA sequence:RefSeq:WP_010268000.1
COORDINATES: similar to AA sequence:RefSeq:WP_005281069.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018018402.1
COORDINATES: similar to AA sequence:RefSeq:WP_006063971.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558201.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: similar to AA sequence:RefSeq:WP_018296475.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611950.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_086557987.1
COORDINATES: protein motif:HMM:NF019313.2
COORDINATES: protein motif:HMM:NF020419.2
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: protein motif:HMM:NF020962.2
type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
COORDINATES: protein motif:HMM:NF023096.2
COORDINATES: similar to AA sequence:RefSeq:WP_005269046.1
COORDINATES: similar to AA sequence:RefSeq:WP_011896749.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017838312.1
COORDINATES: similar to AA sequence:RefSeq:WP_019433794.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: protein motif:HMM:NF014731.2
GO:0015079 - potassium ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015490368.1
magnesium and cobalt transport protein CorA
COORDINATES: similar to AA sequence:RefSeq:WP_017833791.1
COORDINATES: similar to AA sequence:RefSeq:WP_006770314.1
CPBP family intramembrane metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_011015168.1
COORDINATES: similar to AA sequence:RefSeq:WP_003848243.1
COORDINATES: similar to AA sequence:RefSeq:WP_011896729.1
COORDINATES: protein motif:HMM:NF012312.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF028169.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011691021.1
GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018600395.1
GO:0016829 - lyase activity [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: protein motif:HMM:NF014476.2
COORDINATES: similar to AA sequence:RefSeq:WP_019482284.1
COORDINATES: protein motif:HMM:NF004829.0
bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase
COORDINATES: similar to AA sequence:RefSeq:WP_004003465.1
COORDINATES: similar to AA sequence:RefSeq:WP_015002860.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007594412.1
COORDINATES: similar to AA sequence:RefSeq:WP_014743218.1
GO:0030729 - acetoacetate-CoA ligase activity [Evidence IEA]
GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017934256.1
COORDINATES: protein motif:HMM:NF013714.2
COORDINATES: protein motif:HMM:NF025878.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012927.2
COORDINATES: similar to AA sequence:RefSeq:WP_010627602.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0008509 - anion transmembrane transporter activity [Evidence IEA]
GO:0006820 - anion transport [Evidence IEA]
DASS family sodium-coupled anion symporter
COORDINATES: similar to AA sequence:RefSeq:WP_015399516.1
COORDINATES: similar to AA sequence:RefSeq:WP_015399517.1
COORDINATES: similar to AA sequence:RefSeq:WP_006770492.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_007931284.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
aromatic acid/H+ symport family MFS transporter
COORDINATES: similar to AA sequence:RefSeq:WP_017615637.1
COORDINATES: similar to AA sequence:RefSeq:WP_015938298.1
COORDINATES: similar to AA sequence:RefSeq:WP_019175950.1
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_020639421.1
COORDINATES: similar to AA sequence:RefSeq:WP_018770799.1
COORDINATES: similar to AA sequence:RefSeq:WP_018770798.1
COORDINATES: similar to AA sequence:RefSeq:WP_018763836.1
COORDINATES: similar to AA sequence:RefSeq:WP_018719462.1
COORDINATES: similar to AA sequence:RefSeq:WP_003853593.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003853595.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014928894.1
COORDINATES: similar to AA sequence:RefSeq:WP_015402291.1
COORDINATES: similar to AA sequence:RefSeq:WP_015402224.1
COORDINATES: similar to AA sequence:RefSeq:WP_018023049.1
COORDINATES: similar to AA sequence:RefSeq:WP_006438260.1