Corynebacterium comes strain 2019 plasmid pCETAM, complete sequence.
Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.
Classification of three corynebacterial strains isolated from a small paddock in North Rhine-Westphalia: proposal of Corynebacterium kalinowskii sp. nov., Corynebacterium comes sp. nov. and Corynebacterium occultum sp. nov
Submitted (26-NOV-2019) CeBiTec, Uni Bielefeld, Sequenz 1, Bielefeld 33615, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP046454.1.\nAnnotated using prokka v1.11 from http://www.vicbioinformatics.com.\nBacteria and source DNA available from Kalinowski Lab, CeBiTec,\nBielefeld University, Bielefeld.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.8; canu v. 1.8; unicycler v.\n 0.4.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 235.4x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore GridION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/18/2022 10:54:50\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,756\nCDSs (total) :: 2,685\nGenes (coding) :: 2,665\nCDSs (with protein) :: 2,665\nGenes (RNA) :: 71\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 3\nPseudo Genes (total) :: 20\nCDSs (without protein) :: 20\nPseudo Genes (ambiguous residues) :: 0 of 20\nPseudo Genes (frameshifted) :: 9 of 20\nPseudo Genes (incomplete) :: 17 of 20\nPseudo Genes (internal stop) :: 1 of 20\nPseudo Genes (multiple problems) :: 6 of 20\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_006284591.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015402291.1
COORDINATES: similar to AA sequence:RefSeq:WP_006770473.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF013793.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016670.2
COORDINATES: protein motif:HMM:NF013561.2
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015771713.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014045.2
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011751671.1
COORDINATES: protein motif:HMM:NF024949.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: protein motif:HMM:NF014691.2
COORDINATES: protein motif:HMM:NF037437.2
COORDINATES: similar to AA sequence:RefSeq:WP_003854479.1
COORDINATES: similar to AA sequence:RefSeq:WP_014011300.1
COORDINATES: similar to AA sequence:RefSeq:WP_011896448.1
COORDINATES: similar to AA sequence:RefSeq:WP_002857208.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003860191.1
metal-dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011013963.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_003859025.1
COORDINATES: similar to AA sequence:RefSeq:WP_011113078.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005279829.1
COORDINATES: similar to AA sequence:RefSeq:WP_005519148.1
COORDINATES: similar to AA sequence:RefSeq:WP_016458765.1
COORDINATES: similar to AA sequence:RefSeq:WP_005391247.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005392921.1
heavy metal-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006767598.1
COORDINATES: similar to AA sequence:RefSeq:WP_003860224.1
COORDINATES: protein motif:HMM:NF021378.2
COORDINATES: similar to AA sequence:RefSeq:WP_006841231.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006841230.1
COORDINATES: similar to AA sequence:RefSeq:WP_011069231.1
COORDINATES: similar to AA sequence:RefSeq:WP_003847982.1
COORDINATES: similar to AA sequence:RefSeq:WP_003860216.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003847987.1
COORDINATES: similar to AA sequence:RefSeq:WP_018297431.1
COORDINATES: similar to AA sequence:RefSeq:WP_015402255.1
COORDINATES: similar to AA sequence:RefSeq:WP_015453104.1
COORDINATES: similar to AA sequence:RefSeq:WP_006770482.1
vitamin K epoxide reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011076028.1
COORDINATES: similar to AA sequence:RefSeq:WP_017835708.1
COORDINATES: similar to AA sequence:RefSeq:WP_015402237.1
COORDINATES: similar to AA sequence:RefSeq:WP_003859509.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
AraC family ligand binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017204162.1
COORDINATES: similar to AA sequence:RefSeq:WP_018296010.1
COORDINATES: similar to AA sequence:RefSeq:WP_010187313.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_015402270.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015402272.1
COORDINATES: similar to AA sequence:RefSeq:WP_015402273.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006841217.1
COORDINATES: similar to AA sequence:RefSeq:WP_015402276.1
GO:0016410 - N-acyltransferase activity [Evidence IEA]
GO:0042158 - lipoprotein biosynthetic process [Evidence IEA]; GO:0006497 - protein lipidation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006841222.1
GO:0020037 - heme binding [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]
c-type cytochrome biogenesis protein CcsB
COORDINATES: similar to AA sequence:RefSeq:WP_015402278.1
COORDINATES: similar to AA sequence:RefSeq:WP_011013652.1
cytochrome c biogenesis CcdA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018021437.1
COORDINATES: similar to AA sequence:RefSeq:WP_014319625.1
COORDINATES: similar to AA sequence:RefSeq:WP_006284600.1
COORDINATES: similar to AA sequence:RefSeq:WP_015400612.1
COORDINATES: similar to AA sequence:RefSeq:WP_018296921.1
COORDINATES: similar to AA sequence:RefSeq:WP_011896427.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732543.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015650353.1
COORDINATES: similar to AA sequence:RefSeq:WP_018296924.1
type II glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_010080265.1
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009356304.1
beta-phosphoglucomutase family hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_018296926.1
COORDINATES: similar to AA sequence:RefSeq:WP_017824222.1
four-helix bundle copper-binding protein