Haloterrigena salifodinae strain BOL5-1 plasmid pHTS96, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.
Genome Sequence and Methylation Pattern of Haloterrigena salifodinae BOL5-1, An Extremely Halophilic Archaeon from a Bolivian Salt Mine
Submitted (27-JAN-2021) Microbiology and Immunology, University of Maryland, 701 East Pratt Street, Baltimore, MD 21202, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP069193.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PacBio Microbial Assembly v. DEC-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 340.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/07/2022 05:27:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,990\nCDSs (total) :: 4,920\nGenes (coding) :: 4,803\nCDSs (with protein) :: 4,803\nGenes (RNA) :: 70\nrRNAs :: 5, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 4, 4 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 3\nPseudo Genes (total) :: 117\nCDSs (without protein) :: 117\nPseudo Genes (ambiguous residues) :: 0 of 117\nPseudo Genes (frameshifted) :: 64 of 117\nPseudo Genes (incomplete) :: 71 of 117\nPseudo Genes (internal stop) :: 32 of 117\nPseudo Genes (multiple problems) :: 44 of 117\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008458769.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006183436.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014865863.1
COORDINATES: similar to AA sequence:RefSeq:WP_004595480.1
COORDINATES: similar to AA sequence:RefSeq:WP_015911446.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008580586.1
COORDINATES: similar to AA sequence:RefSeq:WP_006649095.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048585.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183361.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594499.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444947.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865855.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043407.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004048595.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183366.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865851.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183369.1
transcription initiation factor IIB family protein
COORDINATES: protein motif:HMM:NF015089.2
COORDINATES: similar to AA sequence:RefSeq:WP_006183460.1
COORDINATES: similar to AA sequence:RefSeq:WP_017342075.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143097.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012289744.1
COORDINATES: similar to AA sequence:RefSeq:WP_014555704.1
COORDINATES: similar to AA sequence:RefSeq:WP_004971372.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881810.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904232.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143091.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458711.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865841.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762230.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904033.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_008444896.1
COORDINATES: similar to AA sequence:RefSeq:WP_008457989.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865899.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053095.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053094.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458695.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364406.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008364405.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184771.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458689.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014865892.1
COORDINATES: similar to AA sequence:RefSeq:WP_007541606.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594626.1
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008458671.1
COORDINATES: similar to AA sequence:RefSeq:WP_008387649.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458668.1
COORDINATES: similar to AA sequence:RefSeq:WP_010546872.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594457.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594458.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222392.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458794.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594461.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053323.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594464.1
COORDINATES: similar to AA sequence:RefSeq:WP_007743304.1
COORDINATES: similar to AA sequence:RefSeq:WP_006826448.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053326.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053327.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594470.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458786.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_004043364.1
COORDINATES: protein motif:HMM:NF012376.2
ribonuclease H-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013035178.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514844.1
COORDINATES: similar to AA sequence:RefSeq:WP_006885441.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825219.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446344.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825217.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054726.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825214.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183424.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006183341.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517739.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458770.1