Haloterrigena salifodinae strain BOL5-1 plasmid pHTS280.6, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.
Genome Sequence and Methylation Pattern of Haloterrigena salifodinae BOL5-1, an Extremely Halophilic Archaeon from a Bolivian Salt Mine
Microbiol Resour Announc 10 (18), e00275-21 (2021)
Submitted (27-JAN-2021) Microbiology and Immunology, University of Maryland, 701 East Pratt Street, Baltimore, MD 21202, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP069192.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PacBio Microbial Assembly v. DEC-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 340.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/07/2022 05:27:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,990\nCDSs (total) :: 4,920\nGenes (coding) :: 4,803\nCDSs (with protein) :: 4,803\nGenes (RNA) :: 70\nrRNAs :: 5, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 4, 4 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 3\nPseudo Genes (total) :: 117\nCDSs (without protein) :: 117\nPseudo Genes (ambiguous residues) :: 0 of 117\nPseudo Genes (frameshifted) :: 64 of 117\nPseudo Genes (incomplete) :: 71 of 117\nPseudo Genes (internal stop) :: 32 of 117\nPseudo Genes (multiple problems) :: 44 of 117\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_015322475.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005579629.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008014867.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012945707.1
COORDINATES: similar to AA sequence:RefSeq:WP_008009229.1
GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945559.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945558.1
GO:0003824 - catalytic activity [Evidence IEA]
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895745.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004041120.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895743.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945554.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945553.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895740.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945551.1
COORDINATES: similar to AA sequence:RefSeq:WP_013875846.1
COORDINATES: similar to AA sequence:RefSeq:WP_007693908.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945548.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895734.1
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945546.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895732.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945544.1
COORDINATES: similar to AA sequence:RefSeq:WP_008097312.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945542.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_008895728.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895727.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945540.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895725.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012945538.1
COORDINATES: similar to AA sequence:RefSeq:WP_004041115.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013199452.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015295 - solute:proton symporter activity [Evidence IEA]
GO:0015718 - monocarboxylic acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006824247.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945534.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: protein motif:HMM:NF036897.2
COORDINATES: similar to AA sequence:RefSeq:WP_008097058.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_006106855.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006106857.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945529.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945526.1
COORDINATES: similar to AA sequence:RefSeq:WP_006827390.1
alpha-L-arabinofuranosidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895713.1
COORDINATES: similar to AA sequence:RefSeq:WP_006653003.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895711.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945520.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895709.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945518.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945517.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895706.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895705.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895704.1
COORDINATES: similar to AA sequence:RefSeq:WP_008607002.1
carbohydrate-binding family 9-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945512.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945511.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945510.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895699.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895698.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945507.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945506.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825626.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945504.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895693.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895692.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895691.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895690.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895689.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_008895688.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945497.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945496.1
GO:0008869 - galactonate dehydratase activity [Evidence IEA]
GO:0009063 - amino acid catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895684.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895683.1
COORDINATES: similar to AA sequence:RefSeq:WP_006600063.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825635.1
GO:0030599 - pectinesterase activity [Evidence IEA]
GO:0042545 - cell wall modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004968403.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945491.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667827.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895677.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945489.1
COORDINATES: similar to AA sequence:RefSeq:WP_004041059.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895674.1
COORDINATES: similar to AA sequence:RefSeq:WP_008006250.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895671.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825643.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945483.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895668.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895667.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945805.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945802.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825650.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895660.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895659.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667671.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895861.1
COORDINATES: similar to AA sequence:RefSeq:WP_006433150.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895859.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895858.1
GO:0008927 - mannonate dehydratase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895856.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895855.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895854.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895853.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
prolyl oligopeptidase family serine peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_013879683.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091191.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895850.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945790.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945789.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_006182271.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013440732.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012945131.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_008094346.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053110.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183460.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015408486.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008895843.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945189.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895841.1
GO:0009326 - formate dehydrogenase complex [Evidence IEA]
GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]
GO:0015942 - formate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945191.1
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945192.1
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region domain-containing protein
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015409529.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012945770.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945769.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895835.1
COORDINATES: similar to AA sequence:RefSeq:WP_006433190.1
COORDINATES: similar to AA sequence:RefSeq:WP_004061970.1
GO:0019239 - deaminase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594827.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895831.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895830.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945761.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895828.1
aldehyde ferredoxin oxidoreductase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015763911.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945758.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945757.1
COORDINATES: similar to AA sequence:RefSeq:WP_008573032.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_006433174.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895823.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945753.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945752.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895819.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945750.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895817.1
COORDINATES: similar to AA sequence:RefSeq:WP_015322487.1
COORDINATES: similar to AA sequence:RefSeq:WP_008096222.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895815.1
COORDINATES: similar to AA sequence:RefSeq:WP_004968636.1
glutathione-independent formaldehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_006184549.1
GO:0008964 - phosphoenolpyruvate carboxylase activity [Evidence IEA]
GO:0015977 - carbon fixation [Evidence IEA]; GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895812.1
COORDINATES: similar to AA sequence:RefSeq:WP_015409529.1,RefSeq:WP_076611631.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012945738.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945737.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895808.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945735.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895806.1
GO:0004156 - dihydropteroate synthase activity [Evidence IEA]
GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945733.1
GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895804.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895803.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895802.1
COORDINATES: similar to AA sequence:RefSeq:WP_015322480.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895800.1
GO:0004794 - L-threonine ammonia-lyase activity [Evidence IEA]
GO:0006549 - isoleucine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011222752.1
COORDINATES: similar to AA sequence:RefSeq:WP_008325138.1
bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_012945726.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895796.1
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
succinylglutamate desuccinylase/aspartoacylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945724.1
aminodeoxychorismate/anthranilate synthase component II
COORDINATES: similar to AA sequence:RefSeq:WP_008385324.1
aminodeoxychorismate synthase, component I
COORDINATES: similar to AA sequence:RefSeq:WP_008895793.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863278.1
dicarboxylate/amino acid:cation symporter
COORDINATES: similar to AA sequence:RefSeq:WP_015911601.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945717.1
GO:0004474 - malate synthase activity [Evidence IEA]
GO:0006097 - glyoxylate cycle [Evidence IEA]; GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006106720.1
COORDINATES: similar to AA sequence:RefSeq:WP_008423016.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895780.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
FAD-binding and (Fe-S)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895779.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895778.1
COORDINATES: similar to AA sequence:RefSeq:WP_007142433.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945710.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895775.1
COORDINATES: similar to AA sequence:RefSeq:WP_006654869.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895772.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895771.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895770.1
beta galactosidase jelly roll domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895769.1
COORDINATES: similar to AA sequence:RefSeq:WP_013875689.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895767.1
COORDINATES: similar to AA sequence:RefSeq:WP_013875687.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895765.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895764.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143386.1
COORDINATES: similar to AA sequence:RefSeq:WP_004968617.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007274249.1
COORDINATES: similar to AA sequence:RefSeq:WP_006106793.1
GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895759.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895758.1
GO:0004560 - alpha-L-fucosidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006106796.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895756.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895755.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895754.1
COORDINATES: similar to AA sequence:RefSeq:WP_007187735.1