Haloterrigena salifodinae strain BOL5-1 plasmid pHTS220, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.
Genome Sequence and Methylation Pattern of Haloterrigena salifodinae BOL5-1, an Extremely Halophilic Archaeon from a Bolivian Salt Mine
Microbiol Resour Announc 10 (18), e00275-21 (2021)
Submitted (27-JAN-2021) Microbiology and Immunology, University of Maryland, 701 East Pratt Street, Baltimore, MD 21202, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP069191.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PacBio Microbial Assembly v. DEC-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 340.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/07/2022 05:27:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,990\nCDSs (total) :: 4,920\nGenes (coding) :: 4,803\nCDSs (with protein) :: 4,803\nGenes (RNA) :: 70\nrRNAs :: 5, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 4, 4 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 3\nPseudo Genes (total) :: 117\nCDSs (without protein) :: 117\nPseudo Genes (ambiguous residues) :: 0 of 117\nPseudo Genes (frameshifted) :: 64 of 117\nPseudo Genes (incomplete) :: 71 of 117\nPseudo Genes (internal stop) :: 32 of 117\nPseudo Genes (multiple problems) :: 44 of 117\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008892363.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005579629.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012945633.1
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945632.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611983.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006182271.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_013875899.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892357.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945388.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111127.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017342795.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945386.1
COORDINATES: similar to AA sequence:RefSeq:WP_006087861.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945384.1
menaquinone-dependent protoporphyrinogen IX dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_012945381.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187313.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945379.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892586.1
cobalamin-independent methionine synthase II family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008892585.1
Tm-1-like ATP-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008892584.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892583.1
phosphoenolpyruvate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007697648.1
dicarboxylate/amino acid:cation symporter
COORDINATES: similar to AA sequence:RefSeq:WP_013879944.1
COORDINATES: similar to AA sequence:RefSeq:WP_015409529.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007108509.1
COORDINATES: similar to AA sequence:RefSeq:WP_008526059.1
COORDINATES: similar to AA sequence:RefSeq:WP_012996630.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014053133.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008421961.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008892579.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892578.1
COORDINATES: protein motif:HMM:NF019473.2
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008892575.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111146.1
COORDINATES: similar to AA sequence:RefSeq:WP_004266928.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945356.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945077.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945076.1
COORDINATES: similar to AA sequence:RefSeq:WP_015911577.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007975853.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945283.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004267939.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_013881883.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892556.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892555.1
COORDINATES: similar to AA sequence:RefSeq:WP_008453948.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892553.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892529.1
COORDINATES: similar to AA sequence:RefSeq:WP_006628337.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_012945337.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762213.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006187338.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014555977.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667152.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431755.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006650528.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892502.1
COORDINATES: protein motif:HMM:NF016831.2
COORDINATES: similar to AA sequence:RefSeq:WP_014865019.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611936.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892498.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945063.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892496.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892495.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048351.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892492.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892491.1
isocitrate lyase/PEP mutase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010904194.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_008892489.1
COORDINATES: similar to AA sequence:RefSeq:WP_004597785.1
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
COORDINATES: similar to AA sequence:RefSeq:WP_012945010.1
GO:0008671 - 2-dehydro-3-deoxygalactonokinase activity [Evidence IEA]; GO:0008673 - 2-dehydro-3-deoxygluconokinase activity [Evidence IEA]
bifunctional 2-dehydro-3-deoxygluconokinase/2-dehydro-3- deoxygalactonokinase
COORDINATES: similar to AA sequence:RefSeq:WP_008892485.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892484.1
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945004.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945003.1
GO:0047487 - oligogalacturonide lyase activity [Evidence IEA]
GO:0045490 - pectin catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008892481.1
family 78 glycoside hydrolase catalytic domain
COORDINATES: similar to AA sequence:RefSeq:WP_008892480.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892479.1
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012944997.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035117.1
GO:0008869 - galactonate dehydratase activity [Evidence IEA]
GO:0009063 - amino acid catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008892476.1
COORDINATES: similar to AA sequence:RefSeq:WP_012944994.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892473.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892472.1
COORDINATES: similar to AA sequence:RefSeq:WP_012944993.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892471.1
COORDINATES: similar to AA sequence:RefSeq:WP_008388594.1
COORDINATES: similar to AA sequence:RefSeq:WP_012944989.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012944990.1
COORDINATES: similar to AA sequence:RefSeq:WP_012944988.1
COORDINATES: similar to AA sequence:RefSeq:WP_012944987.1
COORDINATES: similar to AA sequence:RefSeq:WP_012944986.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892465.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892464.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892463.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892462.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892461.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892460.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012944979.1
COORDINATES: similar to AA sequence:RefSeq:WP_012944978.1
COORDINATES: similar to AA sequence:RefSeq:WP_008388629.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008892456.1
COORDINATES: protein motif:HMM:TIGR00813.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015370 - solute:sodium symporter activity [Evidence IEA]
Members of the Solute:Sodium Symporter (SSS), TC 2.A.21 as described in tcdb.org, catalyze solute:Na+ symport. Known solutes for members of the family include sugars, amino acids, nucleosides, inositols, vitamins, urea or anions, depending on the system.; Members of the Solute:Sodium Symporter (SSS), TC 2.A.21 as described in tcdb.org, catalyze solute:Na+ symport. Known solutes for members of the family include sugars, amino acids, nucleosides, inositols, vitamins, urea or anions, depending on the system; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004041044.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892452.1
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_004061665.1
GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008892450.1
COORDINATES: similar to AA sequence:RefSeq:WP_012944972.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892448.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008892447.1
COORDINATES: similar to AA sequence:RefSeq:WP_004596607.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054662.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892443.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945462.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892441.1
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_007423591.1
phosphogluconate dehydrogenase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF018682.2
four-carbon acid sugar kinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019713909.1
ribulose-bisphosphate carboxylase large subunit family protein
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: similar to AA sequence:RefSeq:WP_005578299.1
COORDINATES: similar to AA sequence:RefSeq:WP_007978059.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004971870.1
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: protein motif:HMM:NF015445.2
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004044322.1
COORDINATES: similar to AA sequence:RefSeq:WP_008311912.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945458.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945457.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008986 - pyruvate, water dikinase activity [Evidence IEA]; GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]; GO:0006090 - pyruvate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945456.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945455.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945454.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945453.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945452.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945451.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979889.1
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: similar to AA sequence:RefSeq:WP_012945449.1
COORDINATES: similar to AA sequence:RefSeq:WP_005560097.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945447.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945446.1
CoA-acylating methylmalonate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_012945444.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012807856.1
COORDINATES: similar to AA sequence:RefSeq:WP_008606935.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895719.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945440.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945439.1
GO:0006020 - inositol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008452143.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945437.1
sugar phosphate isomerase/epimerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008388463.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945435.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945434.1
COORDINATES: similar to AA sequence:RefSeq:WP_005537106.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184549.1
GO:0008964 - phosphoenolpyruvate carboxylase activity [Evidence IEA]
GO:0015977 - carbon fixation [Evidence IEA]; GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008892388.1
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004517298.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892385.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892384.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892383.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945407.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892382.1
COORDINATES: similar to AA sequence:RefSeq:WP_008163136.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945402.1
GO:0004853 - uroporphyrinogen decarboxylase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945401.1
GO:0004729 - oxygen-dependent protoporphyrinogen oxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945400.1
GO:0004325 - ferrochelatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006181126.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892373.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008892372.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945396.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892367.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892366.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
plastocyanin/azurin family copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008892365.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945392.1