Haloterrigena salifodinae strain BOL5-1 plasmid pHTS171, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.
Genome Sequence and Methylation Pattern of Haloterrigena salifodinae BOL5-1, an Extremely Halophilic Archaeon from a Bolivian Salt Mine
Microbiol Resour Announc 10 (18), e00275-21 (2021)
Submitted (27-JAN-2021) Microbiology and Immunology, University of Maryland, 701 East Pratt Street, Baltimore, MD 21202, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP069190.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PacBio Microbial Assembly v. DEC-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 340.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/07/2022 05:27:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,990\nCDSs (total) :: 4,920\nGenes (coding) :: 4,803\nCDSs (with protein) :: 4,803\nGenes (RNA) :: 70\nrRNAs :: 5, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 4, 4 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 3\nPseudo Genes (total) :: 117\nCDSs (without protein) :: 117\nPseudo Genes (ambiguous residues) :: 0 of 117\nPseudo Genes (frameshifted) :: 64 of 117\nPseudo Genes (incomplete) :: 71 of 117\nPseudo Genes (internal stop) :: 32 of 117\nPseudo Genes (multiple problems) :: 44 of 117\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008895620.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008895619.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012946075.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863655.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006091009.1
cob(I)yrinic acid a,c-diamide adenosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008895614.1
COORDINATES: similar to AA sequence:RefSeq:WP_008011834.1
COORDINATES: similar to AA sequence:RefSeq:WP_004216270.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895611.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012946083.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946084.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895608.1
bacterio-opsin activator domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008158847.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261522.1
peptidase M10A and M12B matrixin and adamalysin
COORDINATES: similar to AA sequence:RefSeq:WP_008895605.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895604.1
GO:0004805 - trehalose-phosphatase activity [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895603.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895602.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184412.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895599.1
twin-arginine translocation signal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895598.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895597.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895596.1
COORDINATES: similar to AA sequence:RefSeq:WP_004267878.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895594.1
PGF-CTERM sorting domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895593.1
COORDINATES: similar to AA sequence:RefSeq:WP_014864157.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895591.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090953.1
protein sorting system archaetidylserine decarboxylase
COORDINATES: similar to AA sequence:RefSeq:WP_012946110.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895586.1
COORDINATES: protein motif:HMM:NF024685.2
COORDINATES: similar to AA sequence:RefSeq:WP_008454011.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946112.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090935.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946115.1
COORDINATES: similar to AA sequence:RefSeq:WP_006827921.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946117.1
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007261491.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895576.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895575.1
COORDINATES: similar to AA sequence:RefSeq:WP_006654419.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895573.1
COORDINATES: similar to AA sequence:RefSeq:WP_008453299.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067264.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895570.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431438.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895568.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895567.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895566.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895565.1
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012946131.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090889.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946133.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895561.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261676.1
COORDINATES: similar to AA sequence:RefSeq:WP_006664184.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863628.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_008895557.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007142911.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895555.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895554.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895553.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895552.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008895551.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895550.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945989.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895548.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895542.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006184310.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431302.1
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
ribonucleotide-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_008895539.1
COORDINATES: similar to AA sequence:RefSeq:WP_006663988.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895537.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946001.1
COORDINATES: similar to AA sequence:RefSeq:WP_008159046.1
COORDINATES: similar to AA sequence:RefSeq:WP_013880490.1
COORDINATES: similar to AA sequence:RefSeq:WP_005559009.1
GO:0004765 - shikimate kinase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006091113.1
COORDINATES: protein motif:HMM:NF012355.2
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
plastocyanin/azurin family copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895531.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008577303.1
COORDINATES: similar to AA sequence:RefSeq:WP_008414109.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF017026.2
COORDINATES: similar to AA sequence:RefSeq:WP_005557590.1
COORDINATES: similar to AA sequence:RefSeq:WP_004595631.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004591892.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967982.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946008.1
GO:0015293 - symporter activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
cation:dicarboxylase symporter family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_012946009.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895528.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946011.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895525.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091105.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091104.1
COORDINATES: similar to AA sequence:RefSeq:WP_007109271.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946015.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946016.1
COORDINATES: similar to AA sequence:RefSeq:WP_004216322.1
COORDINATES: similar to AA sequence:RefSeq:WP_006630268.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012946018.1
DUF4097 family beta strand repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895514.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895513.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895512.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946022.1
proton-conducting transporter membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_006184482.1
monovalent cation/H+ antiporter subunit D family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012946024.1
COORDINATES: similar to AA sequence:RefSeq:WP_007109264.1
COORDINATES: similar to AA sequence:RefSeq:WP_007109263.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895506.1
GO:0005451 - monovalent cation:proton antiporter activity [Evidence IEA]
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]
monovalent cation/H(+) antiporter subunit G
COORDINATES: similar to AA sequence:RefSeq:WP_006431472.1
COORDINATES: similar to AA sequence:RefSeq:WP_006650398.1
monovalent cation/H+ antiporter subunit E
COORDINATES: similar to AA sequence:RefSeq:WP_012946030.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091084.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895501.1
(2Fe-2S) ferredoxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006067400.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012946034.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091079.1
COORDINATES: similar to AA sequence:RefSeq:WP_006433144.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012946036.1
GO:0004152 - dihydroorotate dehydrogenase activity [Evidence IEA]
GO:0006222 - UMP biosynthetic process [Evidence IEA]
quinone-dependent dihydroorotate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_012946037.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158764.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946039.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895494.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946041.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012946042.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946043.1
COORDINATES: similar to AA sequence:RefSeq:WP_007109247.1
COORDINATES: similar to AA sequence:RefSeq:WP_007109246.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895651.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895650.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946048.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091062.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091061.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946051.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895645.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895644.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946054.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895642.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895641.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946057.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946058.1
COORDINATES: similar to AA sequence:RefSeq:WP_004217266.1
GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895636.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895635.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895634.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261605.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863798.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895631.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431234.1
COORDINATES: similar to AA sequence:RefSeq:WP_018129143.1
COORDINATES: similar to AA sequence:RefSeq:WP_007142509.1
2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_006179444.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946069.1
COORDINATES: similar to AA sequence:RefSeq:WP_006827877.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895623.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946072.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: similar to AA sequence:RefSeq:WP_006054490.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008895621.1