Haloterrigena salifodinae strain BOL5-1 plasmid pHTS138, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.
Genome Sequence and Methylation Pattern of Haloterrigena salifodinae BOL5-1, an Extremely Halophilic Archaeon from a Bolivian Salt Mine
Microbiol Resour Announc 10 (18), e00275-21 (2021)
Submitted (27-JAN-2021) Microbiology and Immunology, University of Maryland, 701 East Pratt Street, Baltimore, MD 21202, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP069189.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PacBio Microbial Assembly v. DEC-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 340.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/07/2022 05:27:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,990\nCDSs (total) :: 4,920\nGenes (coding) :: 4,803\nCDSs (with protein) :: 4,803\nGenes (RNA) :: 70\nrRNAs :: 5, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 4, 4 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 3\nPseudo Genes (total) :: 117\nCDSs (without protein) :: 117\nPseudo Genes (ambiguous residues) :: 0 of 117\nPseudo Genes (frameshifted) :: 64 of 117\nPseudo Genes (incomplete) :: 71 of 117\nPseudo Genes (internal stop) :: 32 of 117\nPseudo Genes (multiple problems) :: 44 of 117\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_015310299.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015310298.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015385.1
COORDINATES: similar to AA sequence:RefSeq:WP_006181057.1
COORDINATES: similar to AA sequence:RefSeq:WP_015299338.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015379.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015378.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006183468.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015075.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012945131.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011571298.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006825372.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004216254.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004216253.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111143.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004042153.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035643.1
COORDINATES: similar to AA sequence:RefSeq:WP_004042151.1
COORDINATES: protein motif:HMM:NF037096.2
COORDINATES: protein motif:HMM:NF040152.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737456.1
adenylate/guanylate cyclase domain-containing protein
COORDINATES: protein motif:HMM:NF012437.2
COORDINATES: similar to AA sequence:RefSeq:WP_006648274.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006111141.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863239.1
COORDINATES: similar to AA sequence:RefSeq:WP_004216116.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015142.1
COORDINATES: similar to AA sequence:RefSeq:WP_007696247.1
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_004967252.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006827262.1
COORDINATES: similar to AA sequence:RefSeq:WP_006826328.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030151 - molybdenum ion binding [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006078555.1
TrkA C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945194.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143091.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010904232.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013881810.1
COORDINATES: similar to AA sequence:RefSeq:WP_004971372.1
COORDINATES: similar to AA sequence:RefSeq:WP_014555704.1
COORDINATES: similar to AA sequence:RefSeq:WP_008605633.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183655.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143101.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012945562.1
COORDINATES: similar to AA sequence:RefSeq:WP_006671866.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446344.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446347.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_004595570.1
COORDINATES: similar to AA sequence:RefSeq:WP_012659213.1
COORDINATES: similar to AA sequence:RefSeq:WP_006430256.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111227.1
COORDINATES: similar to AA sequence:RefSeq:WP_013440732.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012945702.1
COORDINATES: protein motif:HMM:NF012377.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0071704 - organic substance metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF036897.2
COORDINATES: similar to AA sequence:RefSeq:WP_007274292.1
GO:0008927 - mannonate dehydratase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006667480.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945697.1
COORDINATES: similar to AA sequence:RefSeq:WP_006824033.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667477.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945694.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006667475.1
COORDINATES: similar to AA sequence:RefSeq:WP_006824037.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945691.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667472.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945689.1
COORDINATES: similar to AA sequence:RefSeq:WP_006824039.1
COORDINATES: similar to AA sequence:RefSeq:WP_006824040.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945687.1
COORDINATES: similar to AA sequence:RefSeq:WP_006824042.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611936.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004216144.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213741.1
COORDINATES: similar to AA sequence:RefSeq:WP_015320471.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006054537.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001199800.1
COORDINATES: similar to AA sequence:RefSeq:WP_011323565.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF036578.2
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF036579.2
alpha-L-rhamnosidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945675.1
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945676.1
COORDINATES: similar to AA sequence:RefSeq:WP_009377475.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945678.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298923.1
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_006111709.1
GO:0008869 - galactonate dehydratase activity [Evidence IEA]
GO:0009063 - amino acid catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945683.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945684.1
GH32 C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015233383.1
COORDINATES: similar to AA sequence:RefSeq:WP_018128987.1
GO:0009341 - beta-galactosidase complex [Evidence IEA]
GO:0004565 - beta-galactosidase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004041337.1
COORDINATES: similar to AA sequence:RefSeq:WP_005532750.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006182211.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187364.1
COORDINATES: similar to AA sequence:RefSeq:WP_008454165.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_006648166.1
GO:0015385 - sodium:proton antiporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006648168.1
GO:0004053 - arginase activity [Evidence IEA]
GO:0019547 - arginine catabolic process to ornithine [Evidence IEA]
COORDINATES: protein motif:HMM:NF013757.2
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006648170.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015298873.1
COORDINATES: similar to AA sequence:RefSeq:WP_012784464.1
COORDINATES: similar to AA sequence:RefSeq:WP_007699041.1
COORDINATES: similar to AA sequence:RefSeq:WP_011142980.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
quaternary ammonium compound efflux SMR transporter SugE
COORDINATES: protein motif:HMM:NF014080.2
COORDINATES: similar to AA sequence:RefSeq:WP_008895752.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945662.1