Cylindrospermopsis curvispora GIHE-G1 plasmid p-r.curvispora1, complete sequence.
Cylindrospermopsis curvispora GIHE-G1 (Raphidiopsis curvispora GIHE-G1)
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Aphanizomenonaceae; Cylindrospermopsis.
Complete genome sequence of Raphidiopsis curvispora isolated from drinking water reservoir in South Korea
Submitted (28-AUG-2020) Water Environment Research, Gyeonggi Provincial Institute of Health and Environment, 62-Chilboro1Beongil, Suwon, Gyoeonggi 16381, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP060823.1.\nBacteria and source DNA available from Gyeongg-do Institute of\nHealth and Environment.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 15-AUG-2020\nAssembly Method :: HGAP v. 3.0\nAssembly Name :: GIHE3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/15/2022 01:32:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,641\nCDSs (total) :: 3,586\nGenes (coding) :: 3,475\nCDSs (with protein) :: 3,475\nGenes (RNA) :: 55\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 42\nncRNAs :: 4\nPseudo Genes (total) :: 111\nCDSs (without protein) :: 111\nPseudo Genes (ambiguous residues) :: 0 of 111\nPseudo Genes (frameshifted) :: 35 of 111\nPseudo Genes (incomplete) :: 81 of 111\nPseudo Genes (internal stop) :: 15 of 111\nPseudo Genes (multiple problems) :: 18 of 111\nCRISPR Arrays :: 11\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_009342163.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
trypsin-like peptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006275553.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015079137.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015203072.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006277534.1
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006276853.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006515341.1
COORDINATES: similar to AA sequence:RefSeq:WP_006277532.1
PhnD/SsuA/transferrin family substrate-binding protein
COORDINATES: protein motif:HMM:NF019976.2
nuclease-related domain-containing protein
COORDINATES: protein motif:HMM:NF014073.2
tripartite tricarboxylate transporter permease
OB-fold nucleic acid binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015083551.1
COORDINATES: similar to AA sequence:RefSeq:WP_045870379.1
GO:0009538 - photosystem I reaction center [Evidence IEA]; GO:0009539 - photosystem II reaction center [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015164300.1
COORDINATES: similar to AA sequence:RefSeq:WP_015173976.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006277565.1
COORDINATES: similar to AA sequence:RefSeq:WP_006277564.1
COORDINATES: similar to AA sequence:RefSeq:WP_006278953.1
COORDINATES: protein motif:HMM:NF019540.2
type II toxin-antitoxin system HicA family toxin
COORDINATES: protein motif:HMM:NF012318.2
COORDINATES: protein motif:HMM:NF024758.2
COORDINATES: protein motif:HMM:NF025579.2
COORDINATES: protein motif:HMM:NF012298.2
COORDINATES: similar to AA sequence:RefSeq:WP_006278342.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999076.1
COORDINATES: similar to AA sequence:RefSeq:WP_006278962.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011317914.1
COORDINATES: similar to AA sequence:RefSeq:WP_006277603.1
COORDINATES: similar to AA sequence:RefSeq:WP_006279024.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF033545.0
COORDINATES: similar to AA sequence:RefSeq:WP_012265275.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006278334.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006278333.1
COORDINATES: similar to AA sequence:RefSeq:WP_006278331.1
COORDINATES: similar to AA sequence:RefSeq:WP_007303678.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006276795.1
COORDINATES: protein motif:HMM:NF041216.1
COORDINATES: similar to AA sequence:RefSeq:WP_006278955.1
COORDINATES: similar to AA sequence:RefSeq:WP_019505909.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: protein motif:HMM:NF040412.1
COORDINATES: similar to AA sequence:RefSeq:WP_006277218.1
COORDINATES: protein motif:HMM:NF017256.2
COORDINATES: similar to AA sequence:RefSeq:WP_016953804.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953805.1
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF014871.2
bifunctional metallophosphatase/5'-nucleotidase
COORDINATES: similar to AA sequence:RefSeq:WP_006277073.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006277072.1
COORDINATES: similar to AA sequence:RefSeq:WP_015213259.1
muconolactone Delta-isomerase family protein
COORDINATES: protein motif:HMM:NF023168.2
COORDINATES: protein motif:HMM:NF024793.2
COORDINATES: protein motif:HMM:NF016214.2
COORDINATES: similar to AA sequence:RefSeq:WP_015125516.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006276775.1
COORDINATES: similar to AA sequence:RefSeq:WP_006276779.1
COORDINATES: protein motif:HMM:NF024487.2
COORDINATES: similar to AA sequence:RefSeq:WP_006276781.1
COORDINATES: protein motif:HMM:NF015722.2
formylglycine-generating enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015116152.1
COORDINATES: protein motif:HMM:NF025054.2
COORDINATES: similar to AA sequence:RefSeq:WP_017320060.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
type I-MYXAN CRISPR-associated endonuclease Cas1
COORDINATES: similar to AA sequence:RefSeq:WP_017318854.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012629462.1
COORDINATES: similar to AA sequence:RefSeq:WP_015224028.1
type I-MYXAN CRISPR-associated protein Cas6/Cmx6
COORDINATES: similar to AA sequence:RefSeq:WP_015224029.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015224030.1
type I-MYXAN CRISPR-associated protein Cmx8
COORDINATES: similar to AA sequence:RefSeq:WP_020765670.1
type I-B CRISPR-associated protein Cas7/Cst2/DevR
COORDINATES: similar to AA sequence:RefSeq:WP_017748683.1
GO:0003674 - molecular_function [Evidence IEA]
type I-MYXAN CRISPR-associated protein Cas5/Cmx5/DevS
COORDINATES: similar to AA sequence:RefSeq:WP_006276174.1
COORDINATES: similar to AA sequence:RefSeq:WP_009343025.1
COORDINATES: protein motif:HMM:NF024367.2
COORDINATES: similar to AA sequence:RefSeq:WP_015975714.1
COORDINATES: protein motif:HMM:NF016024.2
COORDINATES: similar to AA sequence:RefSeq:WP_010873438.1
COORDINATES: protein motif:HMM:NF016302.2
COORDINATES: protein motif:HMM:NF014814.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017311500.1
COORDINATES: similar to AA sequence:RefSeq:WP_012162629.1