Pseudomonas juntendi strain PP_2463 plasmid p2463-1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
Complete genome sequence of a Pseudomonas juntendi strain PP_2463
Submitted (14-JAN-2022) Department of Clinical Laboratory, Sanmen People's Hospital, Taihe Road, Taizhou, Zhejiang 317100, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP091089.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina NovaSeq; Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/15/2022 05:58:56\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,237\nCDSs (total) :: 5,137\nGenes (coding) :: 5,004\nCDSs (with protein) :: 5,004\nGenes (RNA) :: 100\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 74\nncRNAs :: 4\nPseudo Genes (total) :: 133\nCDSs (without protein) :: 133\nPseudo Genes (ambiguous residues) :: 0 of 133\nPseudo Genes (frameshifted) :: 38 of 133\nPseudo Genes (incomplete) :: 106 of 133\nPseudo Genes (internal stop) :: 16 of 133\nPseudo Genes (multiple problems) :: 21 of 133\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF025659.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012702261.1
COORDINATES: similar to AA sequence:RefSeq:WP_011152163.1
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003294395.1
COORDINATES: similar to AA sequence:RefSeq:WP_019486403.1
COORDINATES: protein motif:HMM:NF022642.2
COORDINATES: protein motif:HMM:NF020952.2
COORDINATES: similar to AA sequence:RefSeq:WP_010456755.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024867.2
COORDINATES: protein motif:HMM:TIGR00616.1
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024096.2
PD-(D/E)XK nuclease-like domain-containing protein
COORDINATES: protein motif:HMM:NF017663.2
RusA family crossover junction endodeoxyribonuclease
COORDINATES: protein motif:HMM:NF040435.1
COORDINATES: protein motif:HMM:NF018795.2
COORDINATES: similar to AA sequence:RefSeq:WP_004667027.1
COORDINATES: similar to AA sequence:RefSeq:WP_010792842.1
COORDINATES: similar to AA sequence:RefSeq:WP_014258859.1
HNH endonuclease signature motif containing protein
COORDINATES: protein motif:HMM:NF013704.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF020897.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011390340.1
COORDINATES: protein motif:HMM:NF016148.2
COORDINATES: protein motif:HMM:NF015461.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025901.2
XkdF-like putative serine protease domain-containing protein
COORDINATES: protein motif:HMM:NF021473.2
COORDINATES: similar to AA sequence:RefSeq:WP_016039889.1
COORDINATES: protein motif:HMM:NF024943.2
COORDINATES: protein motif:HMM:NF039819.1