Candidatus Mycosynbacter amalyticus isolate JR1 chromosome, complete genome.
Bacteria; Candidatus Saccharibacteria; Candidatus Mycosynbacter.
Cocultivation of an ultrasmall environmental parasitic bacterium with lytic ability against bacteria associated with wastewater foams
Submitted (03-NOV-2019) Department of Physiology, Anatomy & Microbiology, La Trobe University, Kingsbury Drive, Bundoora, Victoria 3086, Australia
REFSEQ INFORMATION: The reference sequence is identical to\nCP045921.1.\nBacteria and source DNA available from Steve Petrovski, La Trobe\nUniversity, Bundoora, 3086, VIC, Australia.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: NOV-2019\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 316.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/20/2022 13:26:51\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 1,175\nCDSs (total) :: 1,127\nGenes (coding) :: 1,121\nCDSs (with protein) :: 1,121\nGenes (RNA) :: 48\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 2\nPseudo Genes (total) :: 6\nCDSs (without protein) :: 6\nPseudo Genes (ambiguous residues) :: 0 of 6\nPseudo Genes (frameshifted) :: 0 of 6\nPseudo Genes (incomplete) :: 5 of 6\nPseudo Genes (internal stop) :: 1 of 6\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_010164722.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003688 - DNA replication origin binding [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]; GO:0006275 - regulation of DNA replication [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
chromosomal replication initiator protein DnaA
COORDINATES: similar to AA sequence:RefSeq:WP_010164447.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00611.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
All proteins in this family for which functions are known are DNA-binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair.; All proteins in this family for which functions are known are DNA-binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF037025.2
COORDINATES: similar to AA sequence:RefSeq:WP_012836523.1
COORDINATES: protein motif:HMM:NF028265.2
COORDINATES: protein motif:HMM:NF013126.2
COORDINATES: similar to AA sequence:RefSeq:WP_008578486.1
COORDINATES: similar to AA sequence:RefSeq:WP_010164467.1
COORDINATES: protein motif:HMM:NF024078.2
COORDINATES: protein motif:HMM:NF039493.1
COORDINATES: protein motif:HMM:NF016820.2
COORDINATES: similar to AA sequence:RefSeq:WP_015641702.1
COORDINATES: similar to AA sequence:RefSeq:WP_010164485.1
COORDINATES: similar to AA sequence:RefSeq:WP_010164487.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_010164493.1
COORDINATES: similar to AA sequence:RefSeq:WP_009081356.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025053.2
protein phosphatase 2C domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008579146.1
COORDINATES: similar to AA sequence:RefSeq:WP_015641976.1
COORDINATES: protein motif:HMM:NF024091.2
COORDINATES: similar to AA sequence:RefSeq:WP_016465070.1
COORDINATES: similar to AA sequence:RefSeq:WP_010640513.1
COORDINATES: protein motif:HMM:NF013718.2
COORDINATES: similar to AA sequence:RefSeq:WP_015167142.1
COORDINATES: similar to AA sequence:RefSeq:WP_008578833.1
COORDINATES: protein motif:HMM:NF014567.2
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_007909642.1
COORDINATES: similar to AA sequence:RefSeq:WP_007920856.1
GO:0017013 - protein flavinylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF015100.2
GO:0055085 - transmembrane transport [Evidence IEA]
RnfABCDGE type electron transport complex subunit D
COORDINATES: similar to AA sequence:RefSeq:WP_018504299.1
COORDINATES: protein motif:HMM:NF025186.2
COORDINATES: similar to AA sequence:RefSeq:WP_015641985.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010143680.1
23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH
COORDINATES: similar to AA sequence:RefSeq:WP_015641706.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004832 - valine-tRNA ligase activity [Evidence IEA]
GO:0006438 - valyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024871.2
COORDINATES: similar to AA sequence:RefSeq:WP_008411282.1
GO:0006400 - tRNA modification [Evidence IEA]
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD
COORDINATES: protein motif:HMM:TIGR01085.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0008360 - regulation of cell shape [Evidence IEA]
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase
COORDINATES: similar to AA sequence:RefSeq:WP_012038620.1
COORDINATES: similar to AA sequence:RefSeq:WP_002995288.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017221529.1
GO:0036524 - protein deglycase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012573312.1
COORDINATES: similar to AA sequence:RefSeq:WP_010165533.1
COORDINATES: protein motif:HMM:NF022839.2
COORDINATES: protein motif:HMM:NF021916.2
GO:0097367 - carbohydrate derivative binding [Evidence IEA]
GO:1901135 - carbohydrate derivative metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024116.2
COORDINATES: similar to AA sequence:RefSeq:WP_018305082.1
COORDINATES: similar to AA sequence:RefSeq:WP_004659559.1
COORDINATES: protein motif:HMM:NF024872.2
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017171927.1
COORDINATES: similar to AA sequence:RefSeq:WP_005053849.1
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005053852.1
COORDINATES: protein motif:HMM:NF037679.2
COORDINATES: protein motif:HMM:NF021452.2
COORDINATES: protein motif:HMM:NF037959.1
COORDINATES: protein motif:HMM:NF013713.2
COORDINATES: similar to AA sequence:RefSeq:WP_015641724.1
ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_015641726.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
ribonucleotide-diphosphate reductase subunit beta
COORDINATES: protein motif:HMM:NF014041.2
COORDINATES: protein motif:HMM:NF014038.2
COORDINATES: protein motif:HMM:NF012863.2
COORDINATES: protein motif:HMM:NF014800.2
COORDINATES: similar to AA sequence:RefSeq:WP_005885472.1
GO:0003883 - CTP synthase activity [Evidence IEA]
GO:0006241 - CTP biosynthetic process [Evidence IEA]; GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00456.1
GO:0004814 - arginine-tRNA ligase activity [Evidence IEA]
GO:0006420 - arginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013869.2
COORDINATES: protein motif:HMM:NF016724.2
COORDINATES: similar to AA sequence:RefSeq:WP_018536932.1
GO:0033743 - peptide-methionine (R)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (R)-S-oxide reductase MsrB
COORDINATES: similar to AA sequence:RefSeq:WP_008578367.1
GO:0000175 - 3'-5'-exoribonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010165578.1
COORDINATES: protein motif:HMM:TIGR01391.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015641747.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024635.2
COORDINATES: protein motif:HMM:NF025052.2
COORDINATES: protein motif:HMM:NF004397.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0006261 - DNA-templated DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF025033.2
COORDINATES: protein motif:HMM:NF013607.2
COORDINATES: similar to AA sequence:RefSeq:WP_015641752.1
GO:0004170 - dUTP diphosphatase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0006226 - dUMP biosynthetic process [Evidence IEA]; GO:0046081 - dUTP catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012905.2
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF037015.2
COORDINATES: protein motif:HMM:NF002211.1
GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0019104 - DNA N-glycosylase activity [Evidence IEA]; GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity [Evidence IEA]; GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008534 - oxidized purine nucleobase lesion DNA N-glycosylase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0006284 - base-excision repair [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
COORDINATES: protein motif:HMM:TIGR01128.1
COORDINATES: protein motif:HMM:NF012925.2
COORDINATES: similar to AA sequence:RefSeq:WP_008463721.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000312 - plastid small ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014625.2
COORDINATES: similar to AA sequence:RefSeq:WP_002694428.1
GO:0004730 - pseudouridylate synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015682432.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF019575.2
prepilin-type N-terminal cleavage/methylation domain-containing protein
COORDINATES: protein motif:HMM:NF015755.2
COORDINATES: protein motif:HMM:NF017102.2
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_014128123.1
GO:0004654 - polyribonucleotide nucleotidyltransferase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0006402 - mRNA catabolic process [Evidence IEA]; GO:0006396 - RNA processing [Evidence IEA]
polyribonucleotide nucleotidyltransferase
PAS domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_008578535.1
COORDINATES: similar to AA sequence:RefSeq:WP_015641789.1
COORDINATES: protein motif:HMM:NF013727.2
COORDINATES: protein motif:HMM:NF012334.2
COORDINATES: protein motif:HMM:NF024863.2
COORDINATES: protein motif:HMM:TIGR00166.1
COORDINATES: protein motif:HMM:TIGR00621.2
COORDINATES: similar to AA sequence:RefSeq:WP_010131239.1
COORDINATES: similar to AA sequence:RefSeq:WP_015641798.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007625401.1
COORDINATES: protein motif:HMM:NF015541.2
COORDINATES: protein motif:HMM:TIGR00478.1
COORDINATES: similar to AA sequence:RefSeq:WP_018634586.1
COORDINATES: protein motif:HMM:NF037287.2
COORDINATES: similar to AA sequence:RefSeq:WP_002200129.1
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_008578910.1
GO:0009297 - pilus assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015641810.1
COORDINATES: similar to AA sequence:RefSeq:WP_015641811.1
type IV pilus twitching motility protein PilT
COORDINATES: similar to AA sequence:RefSeq:WP_010165548.1
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF018460.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020524232.1
catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015648.2
COORDINATES: protein motif:HMM:NF025010.2
SurA N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010887922.1
COORDINATES: similar to AA sequence:RefSeq:WP_010164331.1
COORDINATES: similar to AA sequence:RefSeq:WP_020251809.1
COORDINATES: protein motif:HMM:NF013086.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010164333.1
GO:0004829 - threonine-tRNA ligase activity [Evidence IEA]
GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015641829.1
COORDINATES: similar to AA sequence:RefSeq:WP_010164337.1
tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
COORDINATES: similar to AA sequence:RefSeq:WP_015641831.1
COORDINATES: similar to AA sequence:RefSeq:WP_015641832.1
COORDINATES: similar to AA sequence:RefSeq:WP_010164343.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000311 - plastid large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015641834.1
COORDINATES: protein motif:HMM:NF024848.2
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00010
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_012417735.1
GO:0019843 - rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008299689.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012742792.1
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010164353.1
YifB family Mg chelatase-like AAA ATPase
COORDINATES: nucleotide motif:Rfam:14.4:RF00023
COORDINATES: similar to AA sequence:RefSeq:WP_008578523.1
TraM recognition domain-containing protein
COORDINATES: protein motif:HMM:NF013508.2
COORDINATES: similar to AA sequence:RefSeq:WP_015641844.1
GO:0009330 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex [Evidence IEA]
GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
DNA topoisomerase (ATP-hydrolyzing) subunit B
COORDINATES: similar to AA sequence:RefSeq:WP_010165104.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF014711.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
COORDINATES: protein motif:HMM:NF020302.2
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: protein motif:HMM:NF019913.2
COORDINATES: similar to AA sequence:RefSeq:WP_010164964.1
COORDINATES: similar to AA sequence:RefSeq:WP_015641852.1
COORDINATES: protein motif:HMM:NF012948.2
GO:0009986 - cell surface [Evidence IEA]
LPXTG cell wall anchor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010164957.1
GO:0003676 - nucleic acid binding [Evidence IEA]
S1 RNA-binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR00487.1
COORDINATES: similar to AA sequence:RefSeq:WP_010128595.1
COORDINATES: similar to AA sequence:RefSeq:WP_010164949.1
GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IEA]
GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015641863.1
GO:0042586 - peptide deformylase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00595.1
GO:0005658 - alpha DNA polymerase:primase complex [Evidence IEA]
GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0003688 - DNA replication origin binding [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
COORDINATES: protein motif:HMM:NF012383.2
GO:0009116 - nucleoside metabolic process [Evidence IEA]
phosphoribosyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015641866.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015641867.1
COORDINATES: similar to AA sequence:RefSeq:WP_015641869.1
COORDINATES: similar to AA sequence:RefSeq:WP_010124727.1
COORDINATES: similar to AA sequence:RefSeq:WP_015641871.1
COORDINATES: similar to AA sequence:RefSeq:WP_010124248.1
COORDINATES: protein motif:HMM:NF013353.2
GO:0036361 - racemase activity, acting on amino acids and derivatives [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
aspartate/glutamate racemase family protein
COORDINATES: protein motif:HMM:TIGR01174.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0043093 - FtsZ-dependent cytokinesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015641874.1
GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010165454.1
GO:0140110 - transcription regulator activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015641876.1
COORDINATES: similar to AA sequence:RefSeq:WP_015641877.1
vitamin K epoxide reductase family protein
COORDINATES: protein motif:HMM:NF018649.2
COORDINATES: protein motif:HMM:TIGR00392.1
GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA]
GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024627.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: protein motif:HMM:NF012415.2
COORDINATES: protein motif:HMM:NF018021.2
COORDINATES: protein motif:HMM:NF012695.2
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010165019.1
COORDINATES: similar to AA sequence:RefSeq:WP_015641885.1
COORDINATES: similar to AA sequence:RefSeq:WP_015641886.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_010164192.1
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00350.1
COORDINATES: protein motif:HMM:NF012318.2
trypsin-like peptidase domain-containing protein
COORDINATES: protein motif:HMM:TIGR00536.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0018364 - peptidyl-glutamine methylation [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
peptide chain release factor N(5)-glutamine methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_018124000.1
GO:0016149 - translation release factor activity, codon specific [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011903148.1
COORDINATES: protein motif:HMM:NF014731.2
GO:0015079 - potassium ion transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016045.2
low affinity iron permease family protein
COORDINATES: protein motif:HMM:NF015402.2
COORDINATES: similar to AA sequence:RefSeq:WP_016147604.1
COORDINATES: similar to AA sequence:RefSeq:WP_015641898.1
COORDINATES: protein motif:HMM:NF013891.2
GO:0008135 - translation factor activity, RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00055.1
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014244.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014566.2
type II CAAX endopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015641905.1
COORDINATES: similar to AA sequence:RefSeq:WP_015641906.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0070063 - RNA polymerase binding [Evidence IEA]
GO:0032784 - regulation of DNA-templated transcription elongation [Evidence IEA]
COORDINATES: protein motif:HMM:NF001756.1
COORDINATES: similar to AA sequence:RefSeq:WP_020887949.1
COORDINATES: protein motif:HMM:NF015325.2
COORDINATES: protein motif:HMM:NF021489.2
COORDINATES: similar to AA sequence:RefSeq:WP_009483628.1
GO:0050380 - undecaprenyl-diphosphatase activity [Evidence IEA]
GO:0016311 - dephosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015641909.1
COORDINATES: protein motif:HMM:TIGR00414.1
GO:0004828 - serine-tRNA ligase activity [Evidence IEA]
GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00741.1
GO:0022626 - cytosolic ribosome [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA]
GO:0045182 - translation regulator activity [Evidence IEA]
GO:0009386 - translational attenuation [Evidence IEA]
ribosome-associated translation inhibitor RaiA
COORDINATES: similar to AA sequence:RefSeq:WP_015641915.1
GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO:0043952 - protein transport by the Sec complex [Evidence IEA]
COORDINATES: protein motif:HMM:NF017044.2
COORDINATES: protein motif:HMM:TIGR01087.1
GO:0008764 - UDP-N-acetylmuramoylalanine-D-glutamate ligase activity [Evidence IEA]
UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
COORDINATES: protein motif:HMM:NF013594.2
COORDINATES: similar to AA sequence:RefSeq:WP_138078638.1
GO:0003747 - translation release factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012514.2
COORDINATES: protein motif:HMM:NF024232.2
GO:0005887 - integral component of plasma membrane [Evidence IEA]
GO:0003674 - molecular_function [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015641921.1
GO:0000910 - cytokinesis [Evidence IEA]; GO:0006810 - transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014717.2
COORDINATES: protein motif:HMM:TIGR00225.1
COORDINATES: similar to AA sequence:RefSeq:WP_015641927.1
COORDINATES: protein motif:HMM:NF013347.2
COORDINATES: protein motif:HMM:NF015651.2
lysylphosphatidylglycerol synthase transmembrane domain-containing protein
COORDINATES: protein motif:HMM:TIGR00237.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014648.2
COORDINATES: protein motif:HMM:TIGR00613.1
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020255478.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010164183.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00162
SAM riboswitch class I; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_003142625.1
GO:0004478 - methionine adenosyltransferase activity [Evidence IEA]
GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA]
methionine adenosyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF027488.2
COORDINATES: protein motif:HMM:NF024991.2
COORDINATES: protein motif:HMM:NF025433.2
LssY C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012457.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01826.1
COORDINATES: protein motif:HMM:NF024811.2
COORDINATES: protein motif:HMM:NF014439.2
COORDINATES: protein motif:HMM:TIGR00006.1
GO:0016434 - rRNA (cytosine) methyltransferase activity [Evidence IEA]
16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
COORDINATES: protein motif:HMM:NF013100.2
COORDINATES: protein motif:HMM:TIGR00445.1
GO:0008963 - phospho-N-acetylmuramoyl-pentapeptide-transferase activity [Evidence IEA]
phospho-N-acetylmuramoyl-pentapeptide- transferase
COORDINATES: protein motif:HMM:NF013279.2
FtsW/RodA/SpoVE family cell cycle protein
COORDINATES: protein motif:HMM:NF016027.2
GO:0016758 - hexosyltransferase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0030259 - lipid glycosylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015738658.1
COORDINATES: protein motif:HMM:NF011071.0
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
bifunctional alpha,alpha-trehalose-phosphate synthase (UDP-forming)/trehalose-phosphatase
COORDINATES: protein motif:HMM:NF021897.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF016432.2
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015266922.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00732.1
GO:0009294 - DNA-mediated transformation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015641560.1
COORDINATES: protein motif:HMM:NF013629.2
COORDINATES: similar to AA sequence:RefSeq:WP_010165155.1
GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010123581.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
GO:0042254 - ribosome biogenesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF025182.2
COORDINATES: similar to AA sequence:RefSeq:WP_015641989.1
GO:0009982 - pseudouridine synthase activity [Evidence IEA]
GO:0001522 - pseudouridine synthesis [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: protein motif:HMM:NF013777.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: protein motif:HMM:TIGR01473.1
GO:0008495 - protoheme IX farnesyltransferase activity [Evidence IEA]
GO:0006783 - heme biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02847.1
GO:0009486 - cytochrome bo3 ubiquinol oxidase activity [Evidence IEA]
GO:0015990 - electron transport coupled proton transport [Evidence IEA]
cytochrome o ubiquinol oxidase subunit IV
COORDINATES: protein motif:HMM:NF012720.2
cytochrome o ubiquinol oxidase subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_004083794.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: protein motif:HMM:NF018219.2
COORDINATES: similar to AA sequence:RefSeq:WP_018732355.1
COORDINATES: protein motif:HMM:NF015155.2
COORDINATES: protein motif:HMM:NF023568.2
COORDINATES: protein motif:HMM:NF018448.2
threonine/serine exporter family protein
COORDINATES: similar to AA sequence:RefSeq:NP_309749.1
putative cation transport regulator ChaB
COORDINATES: similar to AA sequence:RefSeq:WP_008303337.1
COORDINATES: similar to AA sequence:RefSeq:WP_011775624.1
COORDINATES: similar to AA sequence:RefSeq:WP_003018833.1
GO:0003905 - alkylbase DNA N-glycosylase activity [Evidence IEA]
GO:0006284 - base-excision repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008963994.1
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]
FKBP-type peptidyl-prolyl cis-trans isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_015641608.1
COORDINATES: similar to AA sequence:RefSeq:WP_008909394.1
COORDINATES: protein motif:HMM:NF021427.2
COORDINATES: protein motif:HMM:NF012797.2
COORDINATES: protein motif:HMM:NF012894.2
COORDINATES: similar to AA sequence:RefSeq:WP_019180513.1
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018170502.1
LLM class flavin-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF033788.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: protein motif:HMM:NF013702.2
GO:0016746 - acyltransferase activity [Evidence IEA]
1-acyl-sn-glycerol-3-phosphate acyltransferase
COORDINATES: protein motif:HMM:NF015674.2
COORDINATES: protein motif:HMM:NF013691.2
COORDINATES: similar to AA sequence:RefSeq:WP_010520896.1
type I restriction endonuclease subunit R
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020530876.1
GO:0015666 - restriction endodeoxyribonuclease activity [Evidence IEA]; GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]; GO:0009307 - DNA restriction-modification system [Evidence IEA]
type I restriction-modification system subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_015642010.1
COORDINATES: protein motif:HMM:NF022702.2
COORDINATES: similar to AA sequence:RefSeq:WP_008578579.1
GO:0009332 - glutamate-tRNA ligase complex [Evidence IEA]
GO:0004818 - glutamate-tRNA ligase activity [Evidence IEA]
GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF019911.2
COORDINATES: protein motif:HMM:TIGR01076.1
GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]
GO:0045184 - establishment of protein localization [Evidence IEA]; GO:0016485 - protein processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008578901.1
COORDINATES: similar to AA sequence:RefSeq:WP_007413965.1
COORDINATES: similar to AA sequence:RefSeq:WP_010128729.1
COORDINATES: protein motif:HMM:NF014414.2
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_010164214.1
GO:0033862 - UMP kinase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: similar to AA sequence:RefSeq:WP_015642031.1
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF012234.2
COORDINATES: similar to AA sequence:RefSeq:WP_015642040.1
COORDINATES: protein motif:HMM:NF024874.2
COORDINATES: similar to AA sequence:RefSeq:WP_015641350.1
COORDINATES: protein motif:HMM:NF012492.2
COORDINATES: similar to AA sequence:RefSeq:WP_015490133.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: protein motif:HMM:NF021073.2
COORDINATES: similar to AA sequence:RefSeq:WP_008578623.1
COORDINATES: similar to AA sequence:RefSeq:WP_008578636.1
COORDINATES: protein motif:HMM:TIGR01144.1
GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045264 - plasma membrane proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
GO:0015986 - proton motive force-driven ATP synthesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF012439.2
COORDINATES: similar to AA sequence:RefSeq:WP_015642046.1
GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) [Evidence IEA]; GO:0045262 - plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015642048.1
COORDINATES: similar to AA sequence:RefSeq:WP_008578629.1
COORDINATES: similar to AA sequence:RefSeq:WP_008578630.1
COORDINATES: protein motif:HMM:NF037256.2
COORDINATES: protein motif:HMM:TIGR02532.1
COORDINATES: similar to AA sequence:RefSeq:WP_013059899.1
COORDINATES: protein motif:HMM:NF012789.2
COORDINATES: similar to AA sequence:RefSeq:WP_015642057.1
COORDINATES: protein motif:HMM:NF017743.2
COORDINATES: protein motif:HMM:NF019842.2
COORDINATES: similar to AA sequence:RefSeq:WP_008143748.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA]
alpha amylase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009850066.1
COORDINATES: similar to AA sequence:RefSeq:WP_018770244.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013440.2
COORDINATES: similar to AA sequence:RefSeq:WP_010165481.1
COORDINATES: similar to AA sequence:RefSeq:WP_017834553.1
COORDINATES: similar to AA sequence:RefSeq:WP_018190538.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009883227.1
GO:0008479 - queuine tRNA-ribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013740.2
COORDINATES: similar to AA sequence:RefSeq:WP_008578738.1
GO:0004817 - cysteine-tRNA ligase activity [Evidence IEA]
GO:0006423 - cysteinyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013528.2
COORDINATES: similar to AA sequence:RefSeq:WP_015642081.1
COORDINATES: similar to AA sequence:RefSeq:WP_010164758.1
YbaB/EbfC family nucleoid-associated protein
COORDINATES: protein motif:HMM:NF024629.2
COORDINATES: similar to AA sequence:RefSeq:WP_015642084.1
GO:0003678 - DNA helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02397.1
COORDINATES: similar to AA sequence:RefSeq:WP_010164762.1
COORDINATES: similar to AA sequence:RefSeq:WP_010164764.1
COORDINATES: similar to AA sequence:RefSeq:WP_015642091.1
GO:0015934 - large ribosomal subunit [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00557
ribosomal protein L10 leader region; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:TIGR00041.1
GO:0004798 - thymidylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014560.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0050797 - thymidylate synthase (FAD) activity [Evidence IEA]
GO:0006231 - dTMP biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019239712.1
COORDINATES: protein motif:HMM:NF013327.2
COORDINATES: protein motif:HMM:NF013630.2
LysM peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010886146.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014453.2
COORDINATES: similar to AA sequence:RefSeq:WP_015642113.1
COORDINATES: similar to AA sequence:RefSeq:WP_020254301.1
GO:0006353 - DNA-templated transcription termination [Evidence IEA]
transcription termination/antitermination protein NusG
COORDINATES: protein motif:HMM:TIGR00964.1
GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013980.2
SprT family zinc-dependent metalloprotease
COORDINATES: protein motif:HMM:NF020022.2
COORDINATES: protein motif:HMM:NF016178.2
COORDINATES: protein motif:HMM:NF024812.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024853.2
COORDINATES: protein motif:HMM:NF013117.2
mechanosensitive ion channel family protein
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: similar to AA sequence:RefSeq:WP_010164855.1
COORDINATES: protein motif:HMM:NF012926.2
COORDINATES: similar to AA sequence:RefSeq:WP_014847286.1
COORDINATES: similar to AA sequence:RefSeq:WP_015642131.1
YajQ family cyclic di-GMP-binding protein
COORDINATES: protein motif:HMM:NF013646.2
COORDINATES: protein motif:HMM:NF024816.2
COORDINATES: protein motif:HMM:NF024575.2
COORDINATES: protein motif:HMM:TIGR00005.1
COORDINATES: protein motif:HMM:TIGR00233.1
GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA]
GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010165214.1
COORDINATES: similar to AA sequence:RefSeq:WP_015642142.1
COORDINATES: similar to AA sequence:RefSeq:WP_015642143.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0005762 - mitochondrial large ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF003513.0
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
DNA-directed RNA polymerase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_015942768.1
GO:0015935 - small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010165561.1
COORDINATES: similar to AA sequence:RefSeq:WP_015642147.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011820532.1
COORDINATES: similar to AA sequence:RefSeq:WP_015642148.1
COORDINATES: protein motif:HMM:NF016119.2
COORDINATES: protein motif:HMM:TIGR00967.1
nucleoside 2-deoxyribosyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010165357.1
COORDINATES: similar to AA sequence:RefSeq:WP_010165358.1
COORDINATES: similar to AA sequence:RefSeq:WP_010165360.1
COORDINATES: similar to AA sequence:RefSeq:WP_018133943.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010165236.1
COORDINATES: protein motif:HMM:NF006477.0
COORDINATES: similar to AA sequence:RefSeq:WP_015642159.1
COORDINATES: similar to AA sequence:RefSeq:WP_015642160.1
COORDINATES: similar to AA sequence:RefSeq:WP_012158378.1
COORDINATES: similar to AA sequence:RefSeq:WP_008578358.1
COORDINATES: protein motif:HMM:TIGR00012.1
COORDINATES: similar to AA sequence:RefSeq:WP_015642164.1
COORDINATES: similar to AA sequence:RefSeq:WP_015642165.1
COORDINATES: similar to AA sequence:RefSeq:WP_015642167.1
COORDINATES: similar to AA sequence:RefSeq:WP_015642168.1
COORDINATES: similar to AA sequence:RefSeq:WP_015642169.1
COORDINATES: similar to AA sequence:RefSeq:WP_015642171.1
COORDINATES: similar to AA sequence:RefSeq:WP_015642172.1
COORDINATES: similar to AA sequence:RefSeq:WP_015642173.1
COORDINATES: protein motif:HMM:NF024748.2
class A beta-lactamase-related serine hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_015642179.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012475665.1
COORDINATES: protein motif:HMM:NF013188.2
COORDINATES: similar to AA sequence:RefSeq:WP_015641174.1
COORDINATES: protein motif:HMM:NF012981.2
GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012258227.1
COORDINATES: similar to AA sequence:RefSeq:WP_011064517.1
COORDINATES: protein motif:HMM:TIGR02386.1
GO:0000345 - cytosolic DNA-directed RNA polymerase complex [Evidence IEA]
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
DNA-directed RNA polymerase subunit beta'
COORDINATES: similar to AA sequence:RefSeq:WP_015641184.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0032549 - ribonucleoside binding [Evidence IEA]
DNA-directed RNA polymerase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_005512377.1
COORDINATES: similar to AA sequence:RefSeq:WP_010997826.1
ATP-dependent Clp protease proteolytic subunit
COORDINATES: protein motif:HMM:TIGR00115.1
GO:0005854 - nascent polypeptide-associated complex [Evidence IEA]
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051083 - 'de novo' cotranslational protein folding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00442.1
GO:0004821 - histidine-tRNA ligase activity [Evidence IEA]
GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018177896.1
COORDINATES: protein motif:HMM:NF016060.2
COORDINATES: protein motif:HMM:NF014910.2
COORDINATES: protein motif:HMM:NF024139.2
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019059810.1
COORDINATES: protein motif:HMM:NF022019.2
COORDINATES: similar to AA sequence:RefSeq:WP_010654204.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013889141.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024565.2
COORDINATES: protein motif:HMM:NF022525.2
COORDINATES: protein motif:HMM:NF016362.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00095.1
GO:0052913 - 16S rRNA (guanine(966)-N(2))-methyltransferase activity [Evidence IEA]
GO:0031167 - rRNA methylation [Evidence IEA]
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD
COORDINATES: protein motif:HMM:NF008165.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013283848.1
COORDINATES: protein motif:HMM:TIGR00234.1
GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA]
GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]
transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:NF037434.2
COORDINATES: similar to AA sequence:RefSeq:WP_015641208.1
COORDINATES: similar to AA sequence:RefSeq:WP_015641210.1
ATP-dependent Clp protease ATP-binding subunit
COORDINATES: protein motif:HMM:TIGR01953.1
COORDINATES: protein motif:HMM:NF012496.2
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009372902.1
COORDINATES: protein motif:HMM:NF023266.2
COORDINATES: protein motif:HMM:TIGR00057.1
GO:0061710 - L-threonylcarbamoyladenylate synthase [Evidence IEA]
COORDINATES: protein motif:HMM:NF000595.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003865915.1
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: similar to AA sequence:RefSeq:WP_007026409.1
COORDINATES: similar to AA sequence:RefSeq:WP_003415982.1
GO:0097573 - glutathione oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF005298.0
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024143.2
UTP--glucose-1-phosphate uridylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008579073.1
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB
COORDINATES: similar to AA sequence:RefSeq:WP_015641237.1
GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex [Evidence IEA]
GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA
COORDINATES: protein motif:HMM:TIGR00135.1
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC
COORDINATES: similar to AA sequence:RefSeq:WP_016432309.1
COORDINATES: similar to AA sequence:RefSeq:WP_000441062.1
GO:0009380 - excinuclease repair complex [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0006289 - nucleotide-excision repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015641244.1
COORDINATES: protein motif:HMM:NF012515.2
COORDINATES: similar to AA sequence:RefSeq:WP_010165321.1
GO:0016832 - aldehyde-lyase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015641249.1
COORDINATES: similar to AA sequence:RefSeq:WP_015641251.1
COORDINATES: protein motif:HMM:NF013030.2
COORDINATES: similar to AA sequence:RefSeq:WP_008578662.1
RpiB/LacA/LacB family sugar-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_008579150.1
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0019682 - glyceraldehyde-3-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
type I glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_008578868.1
GO:0015969 - guanosine tetraphosphate metabolic process [Evidence IEA]; GO:0015968 - stringent response [Evidence IEA]
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_009425509.1
COORDINATES: protein motif:HMM:NF015000.2
COORDINATES: similar to AA sequence:RefSeq:WP_008579152.1
COORDINATES: protein motif:HMM:NF012478.2
COORDINATES: similar to AA sequence:RefSeq:WP_015641266.1
COORDINATES: protein motif:HMM:TIGR00472.1
GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IEA]
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]
GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024304.2
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: protein motif:HMM:NF013568.2
phenylalanine--tRNA ligase subunit alpha
COORDINATES: protein motif:HMM:NF012455.2
GO:0015267 - channel activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014680.2
COORDINATES: similar to AA sequence:RefSeq:WP_015641300.1
GO:0052906 - tRNA (guanine(37)-N(1))-methyltransferase activity [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]
tRNA (guanosine(37)-N1)-methyltransferase TrmD
COORDINATES: similar to AA sequence:RefSeq:WP_004232503.1
COORDINATES: similar to AA sequence:RefSeq:WP_020254755.1
COORDINATES: protein motif:HMM:TIGR00002.1
COORDINATES: similar to AA sequence:RefSeq:WP_020256252.1
GO:0004525 - ribonuclease III activity [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015641304.1
transcription antitermination factor NusB
COORDINATES: similar to AA sequence:RefSeq:WP_015641306.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: protein motif:HMM:NF019850.2
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
COORDINATES: similar to AA sequence:RefSeq:WP_015800855.1
GO:0005575 - cellular_component [Evidence IEA]
COORDINATES: protein motif:HMM:NF016121.2
COORDINATES: protein motif:HMM:NF014477.2
COORDINATES: protein motif:HMM:NF012402.2
aminoglycoside phosphotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015488255.1
COORDINATES: similar to AA sequence:RefSeq:WP_008578413.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]
GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015641367.1
COORDINATES: similar to AA sequence:RefSeq:WP_017793615.1
COORDINATES: similar to AA sequence:RefSeq:WP_009217821.1
COORDINATES: protein motif:HMM:NF018525.2
COORDINATES: protein motif:HMM:NF020397.2
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: similar to AA sequence:RefSeq:WP_018171328.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF002528.0
D-alanine--D-alanine ligase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008578963.1
replication-associated recombination protein A
COORDINATES: protein motif:HMM:NF012356.2
COORDINATES: similar to AA sequence:RefSeq:WP_020536838.1
GO:0004555 - alpha,alpha-trehalase activity [Evidence IEA]
GO:0005991 - trehalose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014582.2
COORDINATES: similar to AA sequence:RefSeq:WP_008578962.1
GO:0006950 - response to stress [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024491.2
phospholipase D-like domain-containing protein
COORDINATES: protein motif:HMM:NF024108.2
COORDINATES: protein motif:HMM:NF012400.2
cytochrome b5-like heme/steroid binding domain-containing protein
COORDINATES: protein motif:HMM:NF015658.2
COORDINATES: protein motif:HMM:NF022747.2
COORDINATES: protein motif:HMM:NF013161.2
COORDINATES: protein motif:HMM:TIGR01511.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01297.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_015641317.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003501134.1
COORDINATES: protein motif:HMM:NF012464.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF012706.2
peptide ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015641375.1
COORDINATES: similar to AA sequence:RefSeq:WP_010164237.1
COORDINATES: protein motif:HMM:NF012766.2
COORDINATES: similar to AA sequence:RefSeq:WP_010164238.1
COORDINATES: similar to AA sequence:RefSeq:WP_011844740.1
COORDINATES: protein motif:HMM:NF007161.0
NADP-dependent phosphogluconate dehydrogenase
COORDINATES: protein motif:HMM:NF013356.2
COORDINATES: protein motif:HMM:NF021443.2
cell wall-active antibiotics response protein
COORDINATES: protein motif:HMM:NF012616.2
rRNA adenine dimethyltransferase family protein
COORDINATES: protein motif:HMM:NF019614.2
COORDINATES: similar to AA sequence:RefSeq:WP_013161512.1
COORDINATES: similar to AA sequence:RefSeq:WP_018893077.1
COORDINATES: similar to AA sequence:RefSeq:WP_019748818.1
COORDINATES: similar to AA sequence:RefSeq:WP_020211237.1
COORDINATES: similar to AA sequence:RefSeq:WP_015641993.1
COORDINATES: protein motif:HMM:NF012933.2
COORDINATES: protein motif:HMM:NF012601.2
COORDINATES: protein motif:HMM:NF001134.0
COORDINATES: similar to AA sequence:RefSeq:WP_011015368.1
COORDINATES: protein motif:HMM:NF021425.2
COORDINATES: similar to AA sequence:RefSeq:WP_013709197.1
COORDINATES: protein motif:HMM:NF037510.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00731.1
GO:0008097 - 5S rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005524439.1
COORDINATES: similar to AA sequence:RefSeq:WP_015641409.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015641411.1
GO:0000175 - 3'-5'-exoribonuclease activity [Evidence IEA]; GO:0008852 - exodeoxyribonuclease I activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015641412.1
COORDINATES: protein motif:HMM:TIGR00247.1
GO:0008932 - lytic endotransglycosylase activity [Evidence IEA]
GO:0071555 - cell wall organization [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015641415.1
COORDINATES: similar to AA sequence:RefSeq:WP_010165649.1
cell division FtsA domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015641418.1
COORDINATES: protein motif:HMM:NF021488.2
COORDINATES: protein motif:HMM:NF024832.2
COORDINATES: protein motif:HMM:NF016145.2
polysaccharide pyruvyl transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012854766.1
COORDINATES: similar to AA sequence:RefSeq:WP_012808998.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010165642.1
COORDINATES: similar to AA sequence:RefSeq:WP_010165641.1
COORDINATES: similar to AA sequence:RefSeq:WP_015641424.1
COORDINATES: similar to AA sequence:RefSeq:WP_010165637.1
GO:0004825 - methionine-tRNA ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014619.2
COORDINATES: similar to AA sequence:RefSeq:WP_010165636.1
GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence IEA]
16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
COORDINATES: protein motif:HMM:NF019142.2
ubiquitin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015641431.1
COORDINATES: similar to AA sequence:RefSeq:WP_010165627.1
GO:0004807 - triose-phosphate isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010165625.1
COORDINATES: similar to AA sequence:RefSeq:WP_015641435.1
GO:0004743 - pyruvate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012377.2
GO:0071704 - organic substance metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01250.1
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015513.2
COORDINATES: similar to AA sequence:RefSeq:WP_019637814.1
COORDINATES: similar to AA sequence:RefSeq:WP_018173321.1
COORDINATES: similar to AA sequence:RefSeq:WP_018514624.1
COORDINATES: protein motif:HMM:NF014881.2
bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase
COORDINATES: protein motif:HMM:NF039825.1
COORDINATES: protein motif:HMM:NF012632.2
COORDINATES: similar to AA sequence:RefSeq:WP_015641453.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010980743.1
COORDINATES: similar to AA sequence:RefSeq:WP_020254750.1
COORDINATES: similar to AA sequence:RefSeq:WP_010165613.1
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_007926406.1
COORDINATES: protein motif:HMM:NF025445.2
COORDINATES: protein motif:HMM:NF027885.2
COORDINATES: protein motif:HMM:NF012970.2
COORDINATES: protein motif:HMM:TIGR00730.1
COORDINATES: protein motif:HMM:NF016491.2
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010165609.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010165607.1
COORDINATES: similar to AA sequence:RefSeq:WP_011692150.1
COORDINATES: similar to AA sequence:RefSeq:WP_018769343.1
COORDINATES: similar to AA sequence:RefSeq:WP_015717668.1
COORDINATES: protein motif:HMM:NF013884.2
COORDINATES: similar to AA sequence:RefSeq:WP_012804317.1
COORDINATES: protein motif:HMM:NF012257.2
Crp/Fnr family transcriptional regulator
COORDINATES: protein motif:HMM:NF020157.2
COORDINATES: protein motif:HMM:NF013080.2
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020475884.1
COORDINATES: protein motif:HMM:NF024852.2
COORDINATES: similar to AA sequence:RefSeq:WP_008593748.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870884.1
COORDINATES: protein motif:HMM:NF022636.2
COORDINATES: similar to AA sequence:RefSeq:WP_016429471.1
COORDINATES: similar to AA sequence:RefSeq:WP_011855142.1
COORDINATES: similar to AA sequence:RefSeq:WP_010165598.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
GO:0006402 - mRNA catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03725.1
GO:0003725 - double-stranded RNA binding [Evidence IEA]
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB
COORDINATES: similar to AA sequence:RefSeq:WP_010165596.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE
COORDINATES: similar to AA sequence:RefSeq:WP_010165595.1
COORDINATES: similar to AA sequence:RefSeq:WP_010165594.1
COORDINATES: similar to AA sequence:RefSeq:WP_015641484.1
COORDINATES: protein motif:HMM:NF017088.2
COORDINATES: protein motif:HMM:NF014668.2
GO:0006282 - regulation of DNA repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015641490.1
GO:0008094 - ATP-dependent activity, acting on DNA [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013381919.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0009378 - four-way junction helicase activity [Evidence IEA]
Holliday junction branch migration DNA helicase RuvB
COORDINATES: similar to AA sequence:RefSeq:WP_015641495.1
GO:0009379 - Holliday junction helicase complex [Evidence IEA]
GO:0009378 - four-way junction helicase activity [Evidence IEA]
Holliday junction branch migration protein RuvA
COORDINATES: protein motif:HMM:TIGR02074.1
GO:0008658 - penicillin binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008579111.1
GO:0008821 - crossover junction endodeoxyribonuclease activity [Evidence IEA]
crossover junction endodeoxyribonuclease RuvC
COORDINATES: protein motif:HMM:NF013125.2
COORDINATES: similar to AA sequence:RefSeq:WP_010128179.1
YebC/PmpR family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF015714.2
COORDINATES: protein motif:HMM:NF014678.2
COORDINATES: similar to AA sequence:RefSeq:WP_008578950.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
30S ribosomal protein S6--L-glutamate ligase
COORDINATES: protein motif:HMM:NF017434.2
COORDINATES: protein motif:HMM:NF024925.2
COORDINATES: protein motif:HMM:NF014951.2
COORDINATES: protein motif:HMM:NF019121.2
COORDINATES: protein motif:HMM:NF025054.2
COORDINATES: similar to AA sequence:RefSeq:WP_015641505.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]
COORDINATES: protein motif:HMM:NF019626.2
COORDINATES: similar to AA sequence:RefSeq:WP_013625153.1
GlsB/YeaQ/YmgE family stress response membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_011188884.1
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: protein motif:HMM:NF019474.2
COORDINATES: protein motif:HMM:NF013212.2
COORDINATES: similar to AA sequence:RefSeq:WP_010165515.1
COORDINATES: protein motif:HMM:TIGR00945.1
GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007173102.1
twin-arginine translocase TatA/TatE family subunit
COORDINATES: protein motif:HMM:NF012624.2
COORDINATES: similar to AA sequence:RefSeq:WP_015641513.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010165505.1
GO:0015297 - antiporter activity [Evidence IEA]; GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015641515.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02432.1
GO:0016879 - ligase activity, forming carbon-nitrogen bonds [Evidence IEA]
COORDINATES: protein motif:HMM:NF013015.2
COORDINATES: protein motif:HMM:NF025736.2
COORDINATES: protein motif:HMM:NF014389.2
COORDINATES: protein motif:HMM:NF022623.2
COORDINATES: protein motif:HMM:NF014713.2
COORDINATES: similar to AA sequence:RefSeq:WP_010414955.1
COORDINATES: similar to AA sequence:RefSeq:WP_003573729.1
COORDINATES: similar to AA sequence:RefSeq:WP_016174881.1
COORDINATES: protein motif:HMM:NF013854.2
non-canonical purine NTP pyrophosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_009101522.1
type 1 glutamine amidotransferase domain-containing protein
COORDINATES: protein motif:HMM:NF013122.2
GO:0004527 - exonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005517774.1
COORDINATES: similar to AA sequence:RefSeq:WP_014434686.1
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:NF016874.2
COORDINATES: similar to AA sequence:RefSeq:WP_002693238.1
COORDINATES: protein motif:HMM:NF012697.2
COORDINATES: protein motif:HMM:NF001080.0
GO:0008176 - tRNA (guanine-N7-)-methyltransferase activity [Evidence IEA]
tRNA (guanosine(46)-N7)-methyltransferase TrmB
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]; GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF015338.2
endonuclease/exonuclease/phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008517809.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012780.2
COORDINATES: protein motif:HMM:TIGR01439.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019049621.1
COORDINATES: protein motif:HMM:TIGR00765.1
YihY/virulence factor BrkB family protein
COORDINATES: protein motif:HMM:NF013694.2
magnesium transporter CorA family protein
COORDINATES: protein motif:HMM:NF017522.2
COORDINATES: protein motif:HMM:NF040138.1
COORDINATES: protein motif:HMM:NF014838.2
COORDINATES: protein motif:HMM:NF012236.2
Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012456.2
GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016459092.1
COORDINATES: similar to AA sequence:RefSeq:WP_016283679.1
COORDINATES: similar to AA sequence:RefSeq:WP_012054881.1
COORDINATES: similar to AA sequence:RefSeq:WP_009773542.1
COORDINATES: protein motif:HMM:NF013704.2
COORDINATES: protein motif:HMM:NF024422.2
phBC6A51 family helix-turn-helix protein
COORDINATES: protein motif:HMM:NF036421.2
COORDINATES: similar to AA sequence:RefSeq:WP_002831611.1
COORDINATES: protein motif:HMM:TIGR01525.1
COORDINATES: similar to AA sequence:RefSeq:WP_007030039.1
COORDINATES: protein motif:HMM:NF013855.2
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: similar to AA sequence:RefSeq:WP_015641648.1
COORDINATES: similar to AA sequence:RefSeq:WP_008578890.1
COORDINATES: similar to AA sequence:RefSeq:WP_014066274.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_010164827.1
adenylyltransferase/cytidyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003510519.1
GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013910684.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006371540.1
COORDINATES: similar to AA sequence:RefSeq:WP_006770172.1
bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase family protein/NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_006821271.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
glucose-1-phosphate thymidylyltransferase RfbA
COORDINATES: similar to AA sequence:RefSeq:WP_013824848.1
COORDINATES: similar to AA sequence:RefSeq:WP_014267618.1
COORDINATES: similar to AA sequence:RefSeq:WP_013824849.1
COORDINATES: protein motif:HMM:NF021436.2
COORDINATES: protein motif:HMM:NF021126.2
COORDINATES: protein motif:HMM:NF021616.2
COORDINATES: similar to AA sequence:RefSeq:WP_014485273.1
COORDINATES: similar to AA sequence:RefSeq:WP_003096566.1
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:NF025072.2
COORDINATES: protein motif:HMM:NF020031.2
COORDINATES: similar to AA sequence:RefSeq:WP_018129842.1
COORDINATES: similar to AA sequence:RefSeq:WP_010165299.1
COORDINATES: similar to AA sequence:RefSeq:WP_015641673.1
R3H domain-containing nucleic acid-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010164729.1
YidC/Oxa1 family membrane protein insertase
COORDINATES: similar to AA sequence:RefSeq:WP_010164727.1
GO:0004526 - ribonuclease P activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010164724.1