Rubrobacter xylanophilus DSM 9941, complete sequence.
Bacteria; Actinomycetota; Rubrobacteria; Rubrobacterales; Rubrobacteraceae; Rubrobacter.
Complete sequence of Rubrobacter xylanophilus DSM 9941
Submitted (07-JUN-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP000386.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 3436081\nSource DNA available from John R. Battista (jbattis@lsu.edu)\nBacteria available from DSMZ: DSM 9941\nContacts: John R. Battista (jbattis@lsu.edu)\n Paul Richardson (microbes@cuba.jgi-psf.org)\nQuality assurance done by JGI-Stanford\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LLNL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/28/2022 00:50:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,307\nCDSs (total) :: 3,254\nGenes (coding) :: 3,218\nCDSs (with protein) :: 3,218\nGenes (RNA) :: 53\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 3\nPseudo Genes (total) :: 36\nCDSs (without protein) :: 36\nPseudo Genes (ambiguous residues) :: 0 of 36\nPseudo Genes (frameshifted) :: 15 of 36\nPseudo Genes (incomplete) :: 26 of 36\nPseudo Genes (internal stop) :: 8 of 36\nPseudo Genes (multiple problems) :: 10 of 36\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:TIGR00362.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003688 - DNA replication origin binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006275 - regulation of DNA replication [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
chromosomal replication initiator protein DnaA
COORDINATES: protein motif:HMM:TIGR00663.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004847683.1
RNA-binding S4 domain-containing protein
COORDINATES: protein motif:HMM:TIGR00611.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
All proteins in this family for which functions are known are DNA-binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016293117.1
GO:0009330 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex [Evidence IEA]
GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
DNA topoisomerase (ATP-hydrolyzing) subunit B
COORDINATES: protein motif:HMM:TIGR01063.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF014045.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00010
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF013086.2
succinate dehydrogenase flavoprotein subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018206853.1
succinate dehydrogenase/fumarate reductase iron-sulfur subunit
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF012514.2
COORDINATES: protein motif:HMM:NF014494.2
COORDINATES: protein motif:HMM:NF018028.2
COORDINATES: protein motif:HMM:NF012334.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF024118.2
COORDINATES: protein motif:HMM:NF033483.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
Stk1 family PASTA domain-containing Ser/Thr kinase
COORDINATES: protein motif:HMM:NF013100.2
COORDINATES: protein motif:HMM:NF013279.2
FtsW/RodA/SpoVE family cell cycle protein
COORDINATES: protein motif:HMM:NF033484.1
GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA]
GO:0006470 - protein dephosphorylation [Evidence IEA]
Stp1/IreP family PP2C-type Ser/Thr phosphatase
COORDINATES: protein motif:HMM:NF028007.2
COORDINATES: protein motif:HMM:NF023818.2
DUF3662 and FHA domain-containing protein
COORDINATES: protein motif:HMM:NF019334.2
COORDINATES: protein motif:HMM:NF013224.2
Lrp/AsnC ligand binding domain-containing protein
COORDINATES: protein motif:HMM:NF010043.0
COORDINATES: protein motif:HMM:NF020123.2
COORDINATES: protein motif:HMM:NF018942.2
MauE/DoxX family redox-associated membrane protein
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: protein motif:HMM:TIGR00585.2
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0006298 - mismatch repair [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00531.1
GO:0009317 - acetyl-CoA carboxylase complex [Evidence IEA]
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
acetyl-CoA carboxylase biotin carboxyl carrier protein
COORDINATES: protein motif:HMM:NF006367.0
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]; GO:0004075 - biotin carboxylase activity [Evidence IEA]
acetyl-CoA carboxylase biotin carboxylase subunit
COORDINATES: protein motif:HMM:NF018798.2
COORDINATES: protein motif:HMM:NF025761.2
circularly permuted type 2 ATP-grasp protein
COORDINATES: protein motif:HMM:TIGR01446.1
COORDINATES: protein motif:HMM:NF005992.0
COORDINATES: similar to AA sequence:RefSeq:WP_011565563.1
COORDINATES: protein motif:HMM:NF019403.2
heparan-alpha-glucosaminide N-acetyltransferase
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: protein motif:HMM:TIGR00621.2
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF024803.2
COORDINATES: protein motif:HMM:NF002881.0
GO:0004801 - transaldolase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: protein motif:HMM:NF004559.0
COORDINATES: protein motif:HMM:TIGR00872.1
GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IEA]
decarboxylating 6-phosphogluconate dehydrogenase
COORDINATES: protein motif:HMM:NF009492.0
GO:0004345 - glucose-6-phosphate dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021632.2
glucose-6-phosphate dehydrogenase assembly protein OpcA
COORDINATES: protein motif:HMM:TIGR01198.1
GO:0017057 - 6-phosphogluconolactonase activity [Evidence IEA]
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF027681.2
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: protein motif:HMM:TIGR02822.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: protein motif:HMM:TIGR00383.1
GO:0015087 - cobalt ion transmembrane transporter activity [Evidence IEA]; GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]
GO:0006824 - cobalt ion transport [Evidence IEA]; GO:0015693 - magnesium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024091.2
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF013740.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564953.1
COORDINATES: protein motif:HMM:NF014566.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0071586 - CAAX-box protein processing [Evidence IEA]
CPBP family glutamic-type intramembrane protease
COORDINATES: protein motif:HMM:NF012610.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: protein motif:HMM:NF013256.2
glycoside hydrolase family 38 C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF016001.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
nitroreductase/quinone reductase family protein
COORDINATES: protein motif:HMM:TIGR01900.1
GO:0009014 - succinyl-diaminopimelate desuccinylase activity [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
COORDINATES: protein motif:HMM:NF008808.1
GO:0016740 - transferase activity [Evidence IEA]
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
COORDINATES: protein motif:HMM:TIGR03537.1
COORDINATES: protein motif:HMM:TIGR01048.1
GO:0008836 - diaminopimelate decarboxylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012312.2
COORDINATES: similar to AA sequence:RefSeq:WP_011565930.1
COORDINATES: protein motif:HMM:NF012515.2
COORDINATES: protein motif:HMM:TIGR01182.1
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
COORDINATES: protein motif:HMM:NF006132.0
COORDINATES: protein motif:HMM:NF012742.2
substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF016089.2
COORDINATES: protein motif:HMM:NF019352.2
GO:0005507 - copper ion binding [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: protein motif:HMM:NF012575.2
COORDINATES: similar to AA sequence:RefSeq:WP_086558197.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024212.2
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF017485.2
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: protein motif:HMM:TIGR00652.1
GO:0008837 - diaminopimelate epimerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024776.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:TIGR00036.1
GO:0008839 - 4-hydroxy-tetrahydrodipicolinate reductase [Evidence IEA]
4-hydroxy-tetrahydrodipicolinate reductase
COORDINATES: protein motif:HMM:TIGR00674.1
GO:0008840 - 4-hydroxy-tetrahydrodipicolinate synthase activity [Evidence IEA]
4-hydroxy-tetrahydrodipicolinate synthase
COORDINATES: protein motif:HMM:NF005154.0
GO:0004072 - aspartate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
CPBP family intramembrane metalloprotease
GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011565537.1
COORDINATES: protein motif:HMM:NF006879.0
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0008987 - quinolinate synthetase A activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00078.1
GO:0004514 - nicotinate-nucleotide diphosphorylase (carboxylating) activity [Evidence IEA]
GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA]
carboxylating nicotinate-nucleotide diphosphorylase
COORDINATES: protein motif:HMM:NF012488.2
COORDINATES: protein motif:HMM:NF015763.2
COORDINATES: protein motif:HMM:NF013923.2
COORDINATES: protein motif:HMM:NF014758.2
COORDINATES: protein motif:HMM:NF013134.2
xanthine dehydrogenase family protein subunit M
COORDINATES: protein motif:HMM:NF019348.2
COORDINATES: protein motif:HMM:NF017569.2
COORDINATES: protein motif:HMM:NF014662.2
COORDINATES: protein motif:HMM:NF024869.2
COORDINATES: protein motif:HMM:NF024214.2
COORDINATES: protein motif:HMM:NF017999.2
COORDINATES: protein motif:HMM:NF025013.2
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: protein motif:HMM:NF012581.2
COORDINATES: protein motif:HMM:TIGR01972.1
proton-conducting transporter membrane subunit
COORDINATES: protein motif:HMM:NF004320.0
GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
GO:0042773 - ATP synthesis coupled electron transport [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoK
COORDINATES: protein motif:HMM:NF012709.2
COORDINATES: protein motif:HMM:NF012373.2
COORDINATES: protein motif:HMM:NF012566.2
heavy metal-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012717.2
COORDINATES: protein motif:HMM:NF012621.2
COORDINATES: similar to AA sequence:RefSeq:WP_000509876.1
metal-sensitive transcriptional regulator
COORDINATES: protein motif:HMM:TIGR01511.1
COORDINATES: protein motif:HMM:NF024258.2
COORDINATES: protein motif:HMM:NF012382.2
PLP-dependent aminotransferase family protein
COORDINATES: protein motif:HMM:NF013539.2
GO:0097367 - carbohydrate derivative binding [Evidence IEA]
GO:1901135 - carbohydrate derivative metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: protein motif:HMM:NF013053.2
isochorismatase family cysteine hydrolase
COORDINATES: protein motif:HMM:TIGR03562.1
COORDINATES: protein motif:HMM:TIGR00813.1
COORDINATES: protein motif:HMM:NF016244.2
COORDINATES: protein motif:HMM:NF001943.0
GO:0016783 - sulfurtransferase activity [Evidence IEA]
formate dehydrogenase accessory sulfurtransferase FdhD
COORDINATES: protein motif:HMM:TIGR01701.1
COORDINATES: protein motif:HMM:NF019845.2
glutathione-independent formaldehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_011881614.1
COORDINATES: protein motif:HMM:NF020976.2
COORDINATES: protein motif:HMM:NF013132.2
GO:0005886 - plasma membrane [Evidence IEA]
GO:0008509 - monoatomic anion transmembrane transporter activity [Evidence IEA]
GO:0006820 - monoatomic anion transport [Evidence IEA]
DASS family sodium-coupled anion symporter
COORDINATES: protein motif:HMM:TIGR00350.1
COORDINATES: protein motif:HMM:NF021501.2
COORDINATES: protein motif:HMM:NF014647.2
BMP family ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF014684.2
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_011565555.1
COORDINATES: protein motif:HMM:NF024252.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:TIGR01994.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
SUF system NifU family Fe-S cluster assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_016632038.1
COORDINATES: similar to AA sequence:RefSeq:WP_001080107.1
non-heme iron oxygenase ferredoxin subunit
COORDINATES: protein motif:HMM:TIGR01981.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563101.1
COORDINATES: similar to AA sequence:RefSeq:WP_016623216.1
COORDINATES: similar to AA sequence:RefSeq:WP_005879209.1
GO:0008168 - methyltransferase activity [Evidence IEA]
methyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF013720.2
COORDINATES: protein motif:HMM:NF024811.2
COORDINATES: similar to AA sequence:RefSeq:WP_017231945.1
COORDINATES: protein motif:HMM:NF014072.2
nickel pincer cofactor biosynthesis protein LarC
COORDINATES: protein motif:HMM:NF023697.2
COORDINATES: protein motif:HMM:NF018980.2
COORDINATES: protein motif:HMM:TIGR03172.2
selenium cofactor biosynthesis protein YqeC
COORDINATES: protein motif:HMM:TIGR01891.1
COORDINATES: protein motif:HMM:NF016764.2
COORDINATES: protein motif:HMM:NF013234.2
phosphomannose isomerase type II C-terminal cupin domain
COORDINATES: protein motif:HMM:NF012298.2
COORDINATES: protein motif:HMM:NF012869.2
COORDINATES: similar to AA sequence:RefSeq:WP_013804409.1
COORDINATES: protein motif:HMM:NF013434.2
COORDINATES: protein motif:HMM:NF012339.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011564544.1
COORDINATES: protein motif:HMM:NF024825.2
branched-chain amino acid ABC transporter permease
COORDINATES: protein motif:HMM:NF015411.2
GO:0050661 - NADP binding [Evidence IEA]
NAD(P)-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013098.2
GO:0018577 - catechol 2,3-dioxygenase activity [Evidence IEA]
GO:0009712 - catechol-containing compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF006731.0
GO:0047443 - 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity [Evidence IEA]
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
COORDINATES: protein motif:HMM:NF014625.2
COORDINATES: protein motif:HMM:NF040043.1
COORDINATES: protein motif:HMM:NF021601.2
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
polysaccharide deacetylase family protein
COORDINATES: protein motif:HMM:NF013706.2
fumarylacetoacetate hydrolase family protein
COORDINATES: protein motif:HMM:NF012976.2
GO:0018576 - catechol 1,2-dioxygenase activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF006056.0
COORDINATES: protein motif:HMM:NF024989.2
zinc-binding alcohol dehydrogenase family protein
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: protein motif:HMM:NF012517.2
COORDINATES: protein motif:HMM:TIGR00636.1
GO:0008817 - corrinoid adenosyltransferase activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
cob(I)yrinic acid a,c-diamide adenosyltransferase
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: protein motif:HMM:NF012234.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024917.2
COORDINATES: protein motif:HMM:TIGR03557.1
GO:0008150 - biological_process [Evidence IEA]
TIGR03557 family F420-dependent LLM class oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_011565670.1
GO:0004157 - dihydropyrimidinase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012428.2
aspartate aminotransferase family protein
COORDINATES: protein motif:HMM:TIGR01879.1
COORDINATES: protein motif:HMM:TIGR00800.1
NCS1 family nucleobase:cation symporter-1
COORDINATES: protein motif:HMM:TIGR03842.1
GO:0070967 - coenzyme F420 binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
TIGR03842 family LLM class F420-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF005748.0
COORDINATES: protein motif:HMM:NF010167.0
GO:0015833 - peptide transport [Evidence IEA]
energy-coupling factor transporter ATPase
COORDINATES: protein motif:HMM:NF014420.2
energy-coupling factor transporter transmembrane component T
COORDINATES: protein motif:HMM:NF018816.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564960.1
GO:0004013 - adenosylhomocysteinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01292.1
GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006375.0
GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025736.2
COORDINATES: protein motif:HMM:NF020893.2
bifunctional DedA family/phosphatase PAP2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011564830.1
COORDINATES: protein motif:HMM:NF012993.2
carbon-nitrogen hydrolase family protein
COORDINATES: protein motif:HMM:NF013225.2
carboxyl transferase domain-containing protein
COORDINATES: protein motif:HMM:NF005686.0
COORDINATES: protein motif:HMM:NF012273.2
COORDINATES: protein motif:HMM:NF015366.2
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: protein motif:HMM:NF018979.2
tripartite tricarboxylate transporter TctB family protein
COORDINATES: protein motif:HMM:NF014073.2
tripartite tricarboxylate transporter permease
COORDINATES: protein motif:HMM:NF014564.2
COORDINATES: protein motif:HMM:NF004796.0
enoyl-CoA hydratase/isomerase family protein
COORDINATES: protein motif:HMM:NF012360.2
COORDINATES: similar to AA sequence:RefSeq:WP_011563244.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011563243.1
COORDINATES: protein motif:HMM:NF021981.2
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00217.1
GO:0004134 - 4-alpha-glucanotransferase activity [Evidence IEA]
GO:0005980 - glycogen catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF017181.2
COORDINATES: similar to AA sequence:RefSeq:WP_003021871.1
GO:0009320 - phosphoribosylaminoimidazole carboxylase complex [Evidence IEA]
GO:0004638 - phosphoribosylaminoimidazole carboxylase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
5-(carboxyamino)imidazole ribonucleotide mutase
COORDINATES: protein motif:HMM:NF004675.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004638 - phosphoribosylaminoimidazole carboxylase activity [Evidence IEA]
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]
5-(carboxyamino)imidazole ribonucleotide synthase
COORDINATES: protein motif:HMM:TIGR01573.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03641.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]
type I-B CRISPR-associated endonuclease Cas1b
COORDINATES: protein motif:HMM:TIGR02619.1
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: protein motif:HMM:NF015728.2
type III-B CRISPR module RAMP protein Cmr6
COORDINATES: protein motif:HMM:TIGR01881.1
type III-B CRISPR module-associated protein Cmr5
COORDINATES: protein motif:HMM:TIGR02580.1
type III-B CRISPR module RAMP protein Cmr4
COORDINATES: protein motif:HMM:NF021236.2
type III-B CRISPR module-associated protein Cmr3
COORDINATES: protein motif:HMM:TIGR02577.1
type III-B CRISPR-associated protein Cas10/Cmr2
COORDINATES: protein motif:HMM:TIGR01894.1
type III-B CRISPR module RAMP protein Cmr1
COORDINATES: protein motif:HMM:NF021006.2
TIGR02221 family CRISPR-associated protein
COORDINATES: protein motif:HMM:TIGR00372.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01587.1
CRISPR-associated helicase/endonuclease Cas3
COORDINATES: protein motif:HMM:NF021240.2
COORDINATES: protein motif:HMM:TIGR02590.1
type I-B CRISPR-associated protein Cas7/Csh2
COORDINATES: protein motif:HMM:NF021033.2
type I-B CRISPR-associated protein Cas8b/Csh1
COORDINATES: protein motif:HMM:TIGR01877.1
CDP-diacylglycerol O-phosphatidyltransferase
COORDINATES: protein motif:HMM:NF021347.2
COORDINATES: protein motif:HMM:TIGR00233.1
GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA]
GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_011563272.1
GO:0009316 - 3-isopropylmalate dehydratase complex [Evidence IEA]
GO:0003861 - 3-isopropylmalate dehydratase activity [Evidence IEA]
GO:0009098 - leucine biosynthetic process [Evidence IEA]
3-isopropylmalate dehydratase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011563273.1
3-isopropylmalate dehydratase small subunit
COORDINATES: protein motif:HMM:NF025343.2
TetR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013089.2
COORDINATES: protein motif:HMM:NF016162.2
COORDINATES: protein motif:HMM:NF013646.2
COORDINATES: protein motif:HMM:NF019846.2
COORDINATES: protein motif:HMM:NF014696.2
GO:0004609 - phosphatidylserine decarboxylase activity [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00473.1
GO:0003882 - CDP-diacylglycerol-serine O-phosphatidyltransferase activity [Evidence IEA]
CDP-diacylglycerol--serine O-phosphatidyltransferase
COORDINATES: protein motif:HMM:TIGR03718.1
COORDINATES: protein motif:HMM:TIGR01070.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0030983 - mismatched DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00066.1
GO:0006750 - glutathione biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF017941.2
COORDINATES: protein motif:HMM:NF037982.1
COORDINATES: protein motif:HMM:NF019344.2
COORDINATES: protein motif:HMM:NF024809.2
COORDINATES: protein motif:HMM:TIGR02094.1
COORDINATES: protein motif:HMM:NF015859.2
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: protein motif:HMM:NF009057.0
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0004834 - tryptophan synthase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]; GO:0006568 - tryptophan metabolic process [Evidence IEA]
TrpB-like pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF012376.2
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0009166 - nucleotide catabolic process [Evidence IEA]
5'-nucleotidase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF015000.2
COORDINATES: protein motif:HMM:NF017591.2
COORDINATES: protein motif:HMM:NF013866.2
COORDINATES: protein motif:HMM:TIGR00413.1
septal ring lytic transglycosylase RlpA family protein
COORDINATES: protein motif:HMM:NF023324.2
alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase
COORDINATES: protein motif:HMM:TIGR02456.1
GO:0047471 - maltose alpha-D-glucosyltransferase activity [Evidence IEA]
GO:0005991 - trehalose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011563310.1
GO:0003844 - 1,4-alpha-glucan branching enzyme activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA]; GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0005978 - glycogen biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02100.1
GO:0004133 - glycogen debranching enzyme activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02402.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
malto-oligosyltrehalose trehalohydrolase
COORDINATES: protein motif:HMM:TIGR02401.1
GO:0047470 - (1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014414.2
COORDINATES: protein motif:HMM:NF012904.2
dihydrodipicolinate synthase family protein
COORDINATES: protein motif:HMM:NF019292.2
nucleoside recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011563321.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]
GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF025701.2
protease complex subunit PrcB family protein
COORDINATES: protein motif:HMM:NF017088.2
COORDINATES: protein motif:HMM:NF015945.2
COORDINATES: protein motif:HMM:NF017505.2
COORDINATES: protein motif:HMM:NF016119.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF008730.0
GO:0003824 - catalytic activity [Evidence IEA]; GO:0015930 - glutamate synthase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0006537 - glutamate biosynthetic process [Evidence IEA]; GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01317.1
COORDINATES: protein motif:HMM:NF025033.2
COORDINATES: protein motif:HMM:NF015944.2
COORDINATES: protein motif:HMM:NF013594.2
COORDINATES: protein motif:HMM:NF005559.1
COORDINATES: protein motif:HMM:NF036525.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF012880.2
thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha
COORDINATES: protein motif:HMM:NF006667.0
alpha-ketoacid dehydrogenase subunit beta
COORDINATES: protein motif:HMM:NF012424.2
dihydrolipoamide acetyltransferase family protein
COORDINATES: protein motif:HMM:NF012335.2
COORDINATES: protein motif:HMM:NF016115.2
COORDINATES: protein motif:HMM:NF004837.0
COORDINATES: protein motif:HMM:NF024966.2
nuclear transport factor 2 family protein
COORDINATES: protein motif:HMM:NF013353.2
GO:0036361 - racemase activity, acting on amino acids and derivatives [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
aspartate/glutamate racemase family protein
COORDINATES: protein motif:HMM:NF015905.2
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014081.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564990.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564991.1
COORDINATES: protein motif:HMM:NF024850.2
COORDINATES: protein motif:HMM:NF015297.2
COORDINATES: protein motif:HMM:TIGR03619.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564715.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565309.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564713.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564566.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565021.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016883831.1
4-hydroxyphenyl-beta-ketoacyl-CoA hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_011563371.1
adenine deaminase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011565902.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564346.1
GO:0008686 - 3,4-dihydroxy-2-butanone-4-phosphate synthase activity [Evidence IEA]
3,4-dihydroxy-2-butanone-4-phosphate synthase
COORDINATES: protein motif:HMM:TIGR00745.1
GO:0008677 - 2-dehydropantoate 2-reductase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:NF015651.2
lysylphosphatidylglycerol synthase domain-containing protein
COORDINATES: protein motif:HMM:NF014690.2
COORDINATES: similar to AA sequence:RefSeq:WP_011563645.1
COORDINATES: protein motif:HMM:NF014679.2
COORDINATES: protein motif:HMM:NF014893.2
COORDINATES: protein motif:HMM:NF013429.2
sugar ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF024799.2
COORDINATES: protein motif:HMM:NF012692.2
COORDINATES: protein motif:HMM:TIGR02151.1
GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA]
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
type 2 isopentenyl-diphosphate Delta-isomerase
sugar phosphate isomerase/epimerase family protein
COORDINATES: protein motif:HMM:TIGR01312.1
GO:0005515 - protein binding [Evidence IEA]; GO:0004856 - xylulokinase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO:0005997 - xylulose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024758.2
COORDINATES: protein motif:HMM:NF013245.2
COORDINATES: protein motif:HMM:NF016099.2
IucA/IucC family siderophore biosynthesis protein
COORDINATES: protein motif:HMM:NF024826.2
lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein
COORDINATES: protein motif:HMM:NF024913.2
COORDINATES: protein motif:HMM:NF012503.2
COORDINATES: protein motif:HMM:NF005393.0
diaminobutyrate--2-oxoglutarate transaminase
COORDINATES: protein motif:HMM:NF013648.2
iron-siderophore ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF013219.2
COORDINATES: protein motif:HMM:NF018031.2
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
IucA/IucC family C-terminal-domain containing protein
COORDINATES: protein motif:HMM:NF016234.2
COORDINATES: protein motif:HMM:NF014598.2
COORDINATES: protein motif:HMM:NF013714.2
COORDINATES: protein motif:HMM:NF021465.2
COORDINATES: protein motif:HMM:NF018712.2
COORDINATES: protein motif:HMM:NF024092.2
COORDINATES: protein motif:HMM:NF019968.2
COORDINATES: protein motif:HMM:NF016326.2
COORDINATES: similar to AA sequence:RefSeq:WP_011565733.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564178.1
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: protein motif:HMM:NF025605.2
COORDINATES: protein motif:HMM:NF017964.2
glycogen debranching N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF033740.0
COORDINATES: protein motif:HMM:TIGR00048.1
GO:0016433 - rRNA (adenine) methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0031167 - rRNA methylation [Evidence IEA]
23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
COORDINATES: protein motif:HMM:NF015648.2
COORDINATES: protein motif:HMM:NF014516.2
COORDINATES: protein motif:HMM:NF015084.2
biotin/lipoate A/B protein ligase family protein
COORDINATES: protein motif:HMM:NF005034.0
COORDINATES: protein motif:HMM:NF012415.2
COORDINATES: protein motif:HMM:TIGR04448.1
GO:0047789 - creatininase activity [Evidence IEA]
GO:0046449 - creatinine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014218.2
COORDINATES: protein motif:HMM:NF012766.2
COORDINATES: protein motif:HMM:TIGR02352.1
GO:0016647 - oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011563749.1
GO:0004180 - carboxypeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF005687.0
COORDINATES: protein motif:HMM:NF000586.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011563753.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563754.1
GO:0050131 - N-methyl-L-amino-acid oxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006144.0
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: protein motif:HMM:NF023043.2
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: protein motif:HMM:NF013046.2
COORDINATES: protein motif:HMM:NF014058.2
COORDINATES: similar to AA sequence:RefSeq:WP_011228915.1
COORDINATES: protein motif:HMM:NF012383.2
GO:0009116 - nucleoside metabolic process [Evidence IEA]
phosphoribosyltransferase family protein
COORDINATES: protein motif:HMM:NF021127.2
COORDINATES: protein motif:HMM:NF014017.2
COORDINATES: protein motif:HMM:NF020022.2
COORDINATES: protein motif:HMM:NF014626.2
COORDINATES: similar to AA sequence:RefSeq:WP_011563482.1
COORDINATES: protein motif:HMM:NF012772.2
GGDEF domain-containing phosphodiesterase
COORDINATES: protein motif:HMM:NF040195.1
COORDINATES: protein motif:HMM:NF012472.2
GO:0004672 - protein kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021221.2
COORDINATES: protein motif:HMM:NF012707.2
basic amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011676756.1
amino acid ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:TIGR00758.1
COORDINATES: protein motif:HMM:NF019607.2
COORDINATES: protein motif:HMM:NF037131.2
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014035.2
COORDINATES: protein motif:HMM:TIGR01428.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002479279.1
YbaB/EbfC family nucleoid-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_011563502.1
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
COORDINATES: protein motif:HMM:NF012492.2
COORDINATES: protein motif:HMM:NF037785.2
COORDINATES: protein motif:HMM:NF012770.2
COORDINATES: protein motif:HMM:NF024674.2
COORDINATES: protein motif:HMM:NF014677.2
COORDINATES: protein motif:HMM:NF024751.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564882.1
COORDINATES: protein motif:HMM:NF014584.2
COORDINATES: nucleotide motif:Rfam:14.4:RF01734
Fluoride riboswitches increase expression of downstream genes that help mitigate the toxic effects of very high levels of fluoride; They are found in a wide variety of bacteria and archaea; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:TIGR03667.1
TIGR03667 family PPOX class F420-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF015513.2
FadR/GntR family transcriptional regulator
COORDINATES: protein motif:HMM:NF025839.2
COORDINATES: protein motif:HMM:NF016777.2
GO:0008942 - nitrite reductase [NAD(P)H] activity [Evidence IEA]
nitrite reductase (NAD(P)H) small subunit
COORDINATES: protein motif:HMM:NF016203.2
COORDINATES: protein motif:HMM:TIGR01832.1
GO:0008678 - 2-deoxy-D-gluconate 3-dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0000272 - polysaccharide catabolic process [Evidence IEA]
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD
COORDINATES: protein motif:HMM:NF024375.2
2,4'-dihydroxyacetophenone dioxygenase family protein
COORDINATES: protein motif:HMM:NF019498.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564920.1
COORDINATES: protein motif:HMM:NF012398.2
COORDINATES: protein motif:HMM:NF024771.2
mandelate racemase/muconate lactonizing enzyme family protein
ATP-binding cassette domain-containing protein
sugar ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF013316.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564914.1
COORDINATES: protein motif:HMM:TIGR01007.1
GO:0045226 - extracellular polysaccharide biosynthetic process [Evidence IEA]
polysaccharide biosynthesis tyrosine autokinase
COORDINATES: protein motif:HMM:NF024832.2
COORDINATES: protein motif:HMM:NF024860.2
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: similar to AA sequence:RefSeq:WP_017944086.1
GO:0008446 - GDP-mannose 4,6-dehydratase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: protein motif:HMM:TIGR03022.1
undecaprenyl-phosphate galactose phosphotransferase WbaP
COORDINATES: protein motif:HMM:NF024999.2
COORDINATES: protein motif:HMM:NF013577.2
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011565825.1
COORDINATES: protein motif:HMM:TIGR01225.1
GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]
GO:0006548 - histidine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011563969.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0015837 - amine transport [Evidence IEA]
Members of the family are the ATP-binding subunit of ABC transporters for substrates such as betaine, L-proline or other amino acids, choline, carnitine, etc. The substrate specificity is best determined from the substrate-binding subunit, rather than this subunit, as it interacts with the permease subunit and not with substrate directly; Derived by automated computational analysis using gene prediction method: Protein Homology.
betaine/proline/choline family ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011563968.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563966.1
glycine betaine ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF012447.2
COORDINATES: similar to AA sequence:RefSeq:WP_011563573.1
GO:0016153 - urocanate hydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006681.0
COORDINATES: protein motif:HMM:TIGR01224.1
GO:0050480 - imidazolonepropionase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: protein motif:HMM:NF019540.2
type II toxin-antitoxin system HicA family toxin
COORDINATES: protein motif:HMM:NF015658.2
COORDINATES: protein motif:HMM:NF022747.2
COORDINATES: protein motif:HMM:NF018508.2
COORDINATES: protein motif:HMM:TIGR01525.1
COORDINATES: protein motif:HMM:TIGR01297.1
cation diffusion facilitator family transporter
COORDINATES: protein motif:HMM:NF033788.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: protein motif:HMM:TIGR00104.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: similar to AA sequence:RefSeq:WP_011563655.1
trypsin-like peptidase domain-containing protein
COORDINATES: protein motif:HMM:NF002789.0
ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit B
COORDINATES: protein motif:HMM:NF012375.2
COORDINATES: protein motif:HMM:NF004489.0
DeoD-type purine-nucleoside phosphorylase
COORDINATES: protein motif:HMM:NF004490.0
GO:0006206 - pyrimidine nucleobase metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012546.2
COORDINATES: protein motif:HMM:NF003766.0
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0008973 - phosphopentomutase activity [Evidence IEA]
GO:0043094 - cellular metabolic compound salvage [Evidence IEA]; GO:0009117 - nucleotide metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025054.2
COORDINATES: similar to AA sequence:RefSeq:WP_011563601.1
GO:0008478 - pyridoxal kinase activity [Evidence IEA]
GO:0009443 - pyridoxal 5'-phosphate salvage [Evidence IEA]
COORDINATES: protein motif:HMM:NF024854.2
COORDINATES: protein motif:HMM:TIGR00711.1
COORDINATES: protein motif:HMM:NF006757.0
COORDINATES: protein motif:HMM:NF012607.2
COORDINATES: similar to AA sequence:RefSeq:WP_011563609.1
GO:0016835 - carbon-oxygen lyase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009254 - peptidoglycan turnover [Evidence IEA]
N-acetylmuramic acid 6-phosphate etherase
COORDINATES: protein motif:HMM:NF013986.2
BadF/BadG/BcrA/BcrD ATPase family protein
COORDINATES: protein motif:HMM:NF015338.2
endonuclease/exonuclease/phosphatase family protein
COORDINATES: protein motif:HMM:NF012371.2
serine hydrolase domain-containing protein
COORDINATES: protein motif:HMM:NF018743.2
COORDINATES: protein motif:HMM:NF013126.2
COORDINATES: protein motif:HMM:NF019322.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF021038.2
COORDINATES: protein motif:HMM:NF021039.2
COORDINATES: protein motif:HMM:NF001989.1
COORDINATES: protein motif:HMM:TIGR02257.1
GO:0051116 - cobaltochelatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012321.2
magnesium chelatase subunit D family protein
COORDINATES: protein motif:HMM:NF004637.0
COORDINATES: protein motif:HMM:TIGR00379.1
GO:0042242 - cobyrinic acid a,c-diamide synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01467.1
GO:0030788 - precorrin-2 C20-methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01465.1
GO:0046026 - precorrin-4 C11-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011563629.1
cobalt-precorrin-5B (C(1))-methyltransferase
COORDINATES: protein motif:HMM:TIGR02467.1
bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase
COORDINATES: protein motif:HMM:TIGR01466.1
GO:0030789 - precorrin-3B C17-methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024247.2
COORDINATES: protein motif:HMM:NF014612.2
COORDINATES: protein motif:HMM:NF014016.2
COORDINATES: protein motif:HMM:NF000996.0
GO:0008939 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity [Evidence IEA]
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
COORDINATES: protein motif:HMM:TIGR00317.1
GO:0008818 - cobalamin 5'-phosphate synthase activity [Evidence IEA]
adenosylcobinamide-GDP ribazoletransferase
COORDINATES: protein motif:HMM:NF015164.2
GO:0016880 - acid-ammonia (or amide) ligase activity [Evidence IEA]
adenosylcobinamide-phosphate synthase CbiB
COORDINATES: protein motif:HMM:NF012521.2
COORDINATES: protein motif:HMM:NF004469.0
GO:0043752 - adenosylcobinamide kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
COORDINATES: protein motif:HMM:NF015956.2
metal-dependent transcriptional regulator
COORDINATES: protein motif:HMM:NF001923.0
COORDINATES: protein motif:HMM:NF014582.2
COORDINATES: similar to AA sequence:RefSeq:WP_011563380.1
COORDINATES: protein motif:HMM:TIGR00221.1
GO:0008448 - N-acetylglucosamine-6-phosphate deacetylase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]
N-acetylglucosamine-6-phosphate deacetylase
COORDINATES: protein motif:HMM:NF013798.2
COORDINATES: protein motif:HMM:TIGR00357.1
GO:0033743 - peptide-methionine (R)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (R)-S-oxide reductase MsrB
COORDINATES: similar to AA sequence:RefSeq:WP_011563650.1
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013080.2
COORDINATES: protein motif:HMM:NF013071.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564589.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563590.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565661.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563663.1
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_011565263.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563293.1
COORDINATES: protein motif:HMM:NF020687.2
COORDINATES: protein motif:HMM:NF014074.2
ATP-dependent Clp protease proteolytic subunit
COORDINATES: protein motif:HMM:NF024491.2
phospholipase D-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011563668.1
GO:0004612 - phosphoenolpyruvate carboxykinase (ATP) activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF016925.2
COORDINATES: protein motif:HMM:NF018436.2
COORDINATES: protein motif:HMM:NF014608.2
COORDINATES: protein motif:HMM:NF021530.2
GO:0030745 - dimethylhistidine N-methyltransferase activity [Evidence IEA]
GO:0052699 - ergothioneine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03442.1
COORDINATES: protein motif:HMM:TIGR03440.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564197.1
COORDINATES: protein motif:HMM:NF012888.2
GO:0008146 - sulfotransferase activity [Evidence IEA]
sulfotransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000508175.1
COORDINATES: protein motif:HMM:NF012673.2
COORDINATES: protein motif:HMM:NF013073.2
COORDINATES: protein motif:HMM:TIGR00706.1
GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF014062.2
COORDINATES: similar to AA sequence:RefSeq:WP_016292632.1
COORDINATES: protein motif:HMM:NF019350.2
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF013239.2
COORDINATES: protein motif:HMM:NF016154.2
COORDINATES: protein motif:HMM:NF013257.2
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO:0009244 - lipopolysaccharide core region biosynthetic process [Evidence IEA]
D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase
COORDINATES: protein motif:HMM:NF024969.2
COORDINATES: protein motif:HMM:NF024914.2
COORDINATES: protein motif:HMM:NF014589.2
carbamoyltransferase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013530.2
COORDINATES: protein motif:HMM:NF021536.2
COORDINATES: protein motif:HMM:TIGR01777.1
COORDINATES: protein motif:HMM:NF014234.2
GO:0008977 - prephenate dehydrogenase (NAD+) activity [Evidence IEA]; GO:0004665 - prephenate dehydrogenase (NADP+) activity [Evidence IEA]
GO:0006571 - tyrosine biosynthetic process [Evidence IEA]
prephenate dehydrogenase/arogenate dehydrogenase family protein
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF013939.2
GO:0046417 - chorismate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF006421.0
GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012318.2
COORDINATES: similar to AA sequence:RefSeq:WP_007086815.1
COORDINATES: protein motif:HMM:NF001924.0
GO:0004751 - ribose-5-phosphate isomerase activity [Evidence IEA]
GO:0009052 - pentose-phosphate shunt, non-oxidative branch [Evidence IEA]
COORDINATES: protein motif:HMM:NF013718.2
COORDINATES: protein motif:HMM:NF024430.2
COORDINATES: similar to AA sequence:RefSeq:WP_011565533.1
COORDINATES: protein motif:HMM:NF023395.2
histidine triad nucleotide-binding protein
COORDINATES: protein motif:HMM:NF009472.0
COORDINATES: protein motif:HMM:NF013413.2
COORDINATES: protein motif:HMM:NF004281.0
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
molybdopterin-synthase adenylyltransferase MoeB
COORDINATES: protein motif:HMM:NF014636.2
COORDINATES: protein motif:HMM:NF025819.2
COORDINATES: protein motif:HMM:TIGR01136.1
COORDINATES: protein motif:HMM:NF018484.2
COORDINATES: protein motif:HMM:NF015962.2
COORDINATES: protein motif:HMM:TIGR00765.1
YihY/virulence factor BrkB family protein
COORDINATES: protein motif:HMM:TIGR01056.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013739.2
COORDINATES: protein motif:HMM:NF016104.2
GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IEA]; GO:0004376 - glycolipid mannosyltransferase activity [Evidence IEA]
GO:0006506 - GPI anchor biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014126.2
COORDINATES: protein motif:HMM:NF012935.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013247.2
COORDINATES: protein motif:HMM:TIGR00553.1
GO:0046820 - 4-amino-4-deoxychorismate synthase activity [Evidence IEA]
GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]; GO:0008153 - para-aminobenzoic acid biosynthetic process [Evidence IEA]
aminodeoxychorismate synthase component I
COORDINATES: similar to AA sequence:RefSeq:WP_011563455.1
glycine cleavage T C-terminal barrel domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011564555.1
GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence IEA]
GO:0006555 - methionine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011563752.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004329 - formate-tetrahydrofolate ligase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011563462.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563463.1
COORDINATES: protein motif:HMM:NF024910.2
COORDINATES: protein motif:HMM:NF040370.1
COORDINATES: similar to AA sequence:RefSeq:WP_009252629.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024937.2
COORDINATES: protein motif:HMM:NF003259.0
COORDINATES: protein motif:HMM:NF024143.2
COORDINATES: similar to AA sequence:RefSeq:WP_011563770.1
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013212.2
COORDINATES: protein motif:HMM:NF008035.0
GO:0005515 - protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006303705.1
COORDINATES: protein motif:HMM:NF012850.2
COORDINATES: protein motif:HMM:NF014003.2
COORDINATES: protein motif:HMM:NF024871.2
GO:0016755 - aminoacyltransferase activity [Evidence IEA]
GO:0044038 - cell wall macromolecule biosynthetic process [Evidence IEA]
peptidoglycan bridge formation glycyltransferase FemA/FemB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011563780.1
COORDINATES: protein motif:HMM:NF013514.2
COORDINATES: protein motif:HMM:NF007825.0
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF001484.0
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: protein motif:HMM:NF039905.1
diacylglycerol kinase family lipid kinase
COORDINATES: protein motif:HMM:TIGR00556.1
COORDINATES: protein motif:HMM:TIGR00196.1
bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase
COORDINATES: protein motif:HMM:NF012780.2
COORDINATES: protein motif:HMM:TIGR00492.1
GO:0008784 - alanine racemase activity [Evidence IEA]
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: protein motif:HMM:NF015957.2
COORDINATES: protein motif:HMM:NF014426.2
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE
COORDINATES: protein motif:HMM:TIGR03725.1
GO:0003725 - double-stranded RNA binding [Evidence IEA]
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB
GO:0008999 - peptide-alanine-alpha-N-acetyltransferase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]; GO:0042254 - ribosome biogenesis [Evidence IEA]
ribosomal protein S18-alanine N-acetyltransferase
COORDINATES: protein motif:HMM:TIGR03723.1
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD
COORDINATES: protein motif:HMM:NF013700.2
COORDINATES: similar to AA sequence:RefSeq:WP_019456581.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR01304.1
GO:0003938 - IMP dehydrogenase activity [Evidence IEA]
GuaB3 family IMP dehydrogenase-related protein
COORDINATES: protein motif:HMM:NF000848.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO:0016462 - pyrophosphatase activity [Evidence IEA]
GO:0006177 - GMP biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00975.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]; GO:0042301 - phosphate ion binding [Evidence IEA]
phosphate ABC transporter substrate-binding protein PstS
COORDINATES: protein motif:HMM:TIGR02138.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter permease subunit PstC
COORDINATES: protein motif:HMM:TIGR00974.1
COORDINATES: similar to AA sequence:RefSeq:WP_004810563.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter ATP-binding protein PstB
COORDINATES: protein motif:HMM:NF014010.2
COORDINATES: protein motif:HMM:TIGR00738.1
COORDINATES: protein motif:HMM:NF021788.2
COORDINATES: protein motif:HMM:NF012789.2
COORDINATES: protein motif:HMM:NF011447.0
putative manganese-dependent inorganic diphosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_011563813.1
GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA]
bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD
COORDINATES: similar to AA sequence:RefSeq:WP_011563815.1
GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex [Evidence IEA]
GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC
COORDINATES: similar to AA sequence:RefSeq:WP_011563816.1
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF019496.2
L-fucose/L-arabinose isomerase family protein
COORDINATES: protein motif:HMM:NF012589.2
COORDINATES: protein motif:HMM:NF004012.0
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB
COORDINATES: protein motif:HMM:NF013113.2
alanine--glyoxylate aminotransferase family protein
COORDINATES: protein motif:HMM:TIGR01327.1
GO:0004617 - phosphoglycerate dehydrogenase activity [Evidence IEA]
GO:0006564 - L-serine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025683.2
COORDINATES: protein motif:HMM:NF025533.2
COORDINATES: protein motif:HMM:NF025380.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013847.2
COORDINATES: protein motif:HMM:NF019872.2
COORDINATES: protein motif:HMM:NF006396.0
bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase
COORDINATES: nucleotide motif:Rfam:14.4:RF00162
SAM riboswitch class I; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF012705.2
phytoene/squalene synthase family protein
COORDINATES: protein motif:HMM:TIGR02734.1
GO:0016166 - phytoene dehydrogenase activity [Evidence IEA]
GO:0016117 - carotenoid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF022137.2
class I SAM-dependent rRNA methyltransferase
COORDINATES: protein motif:HMM:NF024116.2
COORDINATES: similar to AA sequence:RefSeq:WP_016292234.1
COORDINATES: protein motif:HMM:TIGR00166.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011563835.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563836.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000311 - plastid large ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF004384.0
GO:0003678 - DNA helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF005908.0
GO:0004318 - enoyl-[acyl-carrier-protein] reductase (NADH) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011563841.1
GO:0003987 - acetate-CoA ligase activity [Evidence IEA]
GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]
COORDINATES: protein motif:HMM:NF013630.2
LysM peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011565262.1
COORDINATES: protein motif:HMM:NF012257.2
Crp/Fnr family transcriptional regulator
COORDINATES: protein motif:HMM:NF024629.2
COORDINATES: protein motif:HMM:NF012706.2
peptide ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015881212.1
COORDINATES: similar to AA sequence:RefSeq:WP_002364714.1
COORDINATES: similar to AA sequence:RefSeq:WP_016290536.1
COORDINATES: protein motif:HMM:NF018024.2
COORDINATES: similar to AA sequence:RefSeq:WP_011565944.1
COORDINATES: similar to AA sequence:RefSeq:WP_017953348.1
dipeptide ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:TIGR00225.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016291595.1
COORDINATES: protein motif:HMM:NF016983.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564529.1
COORDINATES: protein motif:HMM:NF040028.1
COORDINATES: protein motif:HMM:NF013528.2
COORDINATES: protein motif:HMM:TIGR00096.1
GO:0008649 - rRNA methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0000451 - rRNA 2'-O-methylation [Evidence IEA]
16S rRNA (cytidine(1402)-2'-O)-methyltransferase
COORDINATES: protein motif:HMM:TIGR00010.1
COORDINATES: protein motif:HMM:TIGR00755.1
GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence IEA]
16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
COORDINATES: protein motif:HMM:TIGR00154.1
GO:0050515 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity [Evidence IEA]
GO:0016114 - terpenoid biosynthetic process [Evidence IEA]
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
COORDINATES: similar to AA sequence:RefSeq:WP_011563879.1
GO:0019134 - glucosamine-1-phosphate N-acetyltransferase activity [Evidence IEA]; GO:0003977 - UDP-N-acetylglucosamine diphosphorylase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU
COORDINATES: similar to AA sequence:RefSeq:WP_006304462.1
COORDINATES: protein motif:HMM:TIGR00731.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
GO:0008097 - 5S rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO:0006950 - response to stress [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013368.2
GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013222.2
GO:0003908 - methylated-DNA-[protein]-cysteine S-methyltransferase activity [Evidence IEA]
methylated-DNA--[protein]-cysteine S-methyltransferase
COORDINATES: protein motif:HMM:NF013777.2
COORDINATES: protein motif:HMM:NF024953.2
COORDINATES: protein motif:HMM:TIGR00369.1
COORDINATES: protein motif:HMM:TIGR00580.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003690 - double-stranded DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016356.2
COORDINATES: protein motif:HMM:NF025010.2
COORDINATES: similar to AA sequence:RefSeq:WP_011563897.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF004491.0
GO:0004743 - pyruvate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016839.2
septum formation initiator family protein
COORDINATES: protein motif:HMM:NF016314.2
COORDINATES: protein motif:HMM:TIGR02179.1
COORDINATES: protein motif:HMM:NF013974.2
COORDINATES: protein motif:HMM:NF014794.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_011565941.1
Members of this highly hydrophobic protein family,regularly are found preceded by the yybP-ykoY manganese riboswitch (see RF00080). A metal cation transport function is proposed.; Members of this highly hydrophobic protein family,regularly are found preceded by the yybP-ykoY manganese riboswitch (see RF00080). A metal cation transport function is proposed; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564224.1
cobalamin-independent methionine synthase II family protein
NADPH:quinone oxidoreductase family protein
COORDINATES: protein motif:HMM:NF024852.2
COORDINATES: protein motif:HMM:NF021604.2
COORDINATES: protein motif:HMM:TIGR03617.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564521.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011563931.1
D-ribose ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015011271.1
GO:0016872 - intramolecular lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019992863.1
COORDINATES: protein motif:HMM:NF013756.2
COORDINATES: protein motif:HMM:NF014025.2
COORDINATES: protein motif:HMM:TIGR01819.1
GO:0043743 - LPPG:FO 2-phospho-L-lactate transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03552.1
GO:0043814 - phospholactate guanylyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF009396.0
COORDINATES: protein motif:HMM:TIGR01916.1
GO:0043773 - coenzyme F420-0 gamma-glutamyl ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF002537.0
GO:0003824 - catalytic activity [Evidence IEA]; GO:0004604 - phosphoadenylyl-sulfate reductase (thioredoxin) activity [Evidence IEA]
GO:0019379 - sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence IEA]
COORDINATES: protein motif:HMM:NF013259.2
COORDINATES: protein motif:HMM:NF016328.2
Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain
COORDINATES: similar to AA sequence:RefSeq:WP_011563951.1
GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011565296.1
GO:0004020 - adenylylsulfate kinase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015298.2
LLM class flavin-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF013077.2
TIGR03668 family PPOX class F420-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF005609.0
5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH
COORDINATES: protein motif:HMM:NF012790.2
COORDINATES: protein motif:HMM:NF013738.2
iron-sulfur cluster assembly scaffold protein
COORDINATES: protein motif:HMM:NF015155.2
COORDINATES: protein motif:HMM:TIGR00838.1
GO:0004056 - argininosuccinate lyase activity [Evidence IEA]
GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011563570.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563569.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563568.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563567.1
COORDINATES: protein motif:HMM:NF012464.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF002223.0
GO:0004019 - adenylosuccinate synthase activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]
GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00877.1
GO:0004637 - phosphoribosylamine-glycine ligase activity [Evidence IEA]
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]; GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00928.1
GO:0004018 - N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00081.1
GO:0004639 - phosphoribosylaminoimidazolesuccinocarboxamide synthase activity [Evidence IEA]
phosphoribosylaminoimidazolesuccinocarboxamide synthase
COORDINATES: protein motif:HMM:TIGR00302.1
phosphoribosylformylglycinamidine synthase subunit PurS
COORDINATES: similar to AA sequence:RefSeq:WP_011563979.1
GO:0004642 - phosphoribosylformylglycinamidine synthase activity [Evidence IEA]
phosphoribosylformylglycinamidine synthase subunit PurQ
COORDINATES: protein motif:HMM:TIGR01736.1
phosphoribosylformylglycinamidine synthase subunit PurL
COORDINATES: protein motif:HMM:TIGR01134.1
GO:0004044 - amidophosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00878.1
GO:0004641 - phosphoribosylformylglycinamidine cyclo-ligase activity [Evidence IEA]
phosphoribosylformylglycinamidine cyclo-ligase
COORDINATES: protein motif:HMM:TIGR00639.1
GO:0004644 - phosphoribosylglycinamide formyltransferase activity [Evidence IEA]
phosphoribosylglycinamide formyltransferase
COORDINATES: protein motif:HMM:TIGR00355.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0003937 - IMP cyclohydrolase activity [Evidence IEA]; GO:0004643 - phosphoribosylaminoimidazolecarboxamide formyltransferase activity [Evidence IEA]
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]; GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
COORDINATES: protein motif:HMM:NF017913.2
phosphate-starvation-inducible PsiE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011564805.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011564214.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563922.1
COORDINATES: protein motif:HMM:NF014655.2
GO:0030163 - protein catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF017760.2
COORDINATES: protein motif:HMM:NF013180.2
COORDINATES: protein motif:HMM:TIGR02666.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011564006.1
COORDINATES: protein motif:HMM:NF014135.2
COORDINATES: protein motif:HMM:NF014470.2
GO:0015031 - protein transport [Evidence IEA]
twin-arginine translocase TatA/TatE family subunit
COORDINATES: protein motif:HMM:NF022072.2
COORDINATES: protein motif:HMM:NF018021.2
COORDINATES: protein motif:HMM:NF012345.2
COORDINATES: protein motif:HMM:NF012348.2
COORDINATES: protein motif:HMM:NF012296.2
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: protein motif:HMM:NF018066.2
acetoacetate decarboxylase family protein
COORDINATES: protein motif:HMM:NF005306.0
COORDINATES: protein motif:HMM:NF023428.2
replication-associated recombination protein A
COORDINATES: protein motif:HMM:NF024812.2
COORDINATES: protein motif:HMM:NF021134.2
GO:0016758 - hexosyltransferase activity [Evidence IEA]
TrkA C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013895.2
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF019301.2
COORDINATES: protein motif:HMM:NF002999.0
GO:0010181 - FMN binding [Evidence IEA]; GO:0003955 - NAD(P)H dehydrogenase (quinone) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012678.2
COORDINATES: protein motif:HMM:NF013253.2
COORDINATES: protein motif:HMM:NF014510.2
COORDINATES: protein motif:HMM:NF014305.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564041.1
COORDINATES: protein motif:HMM:TIGR03618.1
PPOX class F420-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_011564039.1
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: similar to AA sequence:RefSeq:WP_007786565.1
GO:0004756 - selenide, water dikinase activity [Evidence IEA]
GO:0001887 - selenium compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016216.2
glycerol-3-phosphate responsive antiterminator
COORDINATES: protein motif:HMM:NF000756.0
GO:0004370 - glycerol kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006304688.1
GO:0004371 - glycerone kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002381763.1
COORDINATES: protein motif:HMM:TIGR02365.1
COORDINATES: protein motif:HMM:TIGR02364.1
GO:0047324 - phosphoenolpyruvate-glycerone phosphotransferase activity [Evidence IEA]
dihydroxyacetone kinase phosphoryl donor subunit DhaM
COORDINATES: protein motif:HMM:NF008899.0
GO:0009331 - glycerol-3-phosphate dehydrogenase complex [Evidence IEA]
GO:0004368 - glycerol-3-phosphate dehydrogenase (quinone) activity [Evidence IEA]
GO:0006072 - glycerol-3-phosphate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012436.2
GO:0008199 - ferric iron binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03620.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565690.1
COORDINATES: protein motif:HMM:NF017864.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564060.1
GO:0008914 - leucyltransferase activity [Evidence IEA]
leucyl/phenylalanyl-tRNA--protein transferase
COORDINATES: protein motif:HMM:NF021287.2
COORDINATES: protein motif:HMM:NF016213.2
COORDINATES: protein motif:HMM:TIGR00268.1
ATP-dependent sacrificial sulfur transferase LarE
COORDINATES: similar to AA sequence:RefSeq:WP_011564363.1
beta-ketoacyl-[acyl-carrier-protein] synthase family protein
COORDINATES: protein motif:HMM:NF012421.2
3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF016107.2
GO:0004671 - protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity [Evidence IEA]
GO:0006481 - C-terminal protein methylation [Evidence IEA]
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011564070.1
GO:0004828 - serine-tRNA ligase activity [Evidence IEA]
GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011564071.1
GO:0004827 - proline-tRNA ligase activity [Evidence IEA]
GO:0006433 - prolyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF001209.0
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00657.1
COORDINATES: protein motif:HMM:NF012945.2
COORDINATES: protein motif:HMM:NF011456.0
GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0008652 - amino acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02605.1
COORDINATES: protein motif:HMM:NF005298.0
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014165.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564201.1
COORDINATES: protein motif:HMM:TIGR00443.1
GO:0003879 - ATP phosphoribosyltransferase activity [Evidence IEA]; GO:0030234 - enzyme regulator activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
ATP phosphoribosyltransferase regulatory subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011564085.1
GO:0003879 - ATP phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013013.2
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011564087.1
imidazoleglycerol-phosphate dehydratase HisB
COORDINATES: protein motif:HMM:TIGR01855.1
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
imidazole glycerol phosphate synthase subunit HisH
COORDINATES: similar to AA sequence:RefSeq:WP_011564089.1
GO:0003949 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase activity [Evidence IEA]
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase
transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016291004.1
(2Fe-2S) ferredoxin domain-containing protein
COORDINATES: protein motif:HMM:NF019604.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017953470.1
ADP-ribosylglycohydrolase family protein
COORDINATES: protein motif:HMM:NF017517.2
cyclin-dependent kinase inhibitor 3 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011302578.1
MogA/MoaB family molybdenum cofactor biosynthesis protein
COORDINATES: protein motif:HMM:NF002074.0
GO:0070006 - metalloaminopeptidase activity [Evidence IEA]
GO:0019538 - protein metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02050.1
GO:0016881 - acid-amino acid ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013991.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0046917 - triphosphoribosyl-dephospho-CoA synthase activity [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]
triphosphoribosyl-dephospho-CoA synthase
COORDINATES: protein motif:HMM:NF002671.0
CbiX/SirB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF037718.2
COORDINATES: protein motif:HMM:NF016836.2
COORDINATES: protein motif:HMM:NF014877.2
COORDINATES: similar to AA sequence:RefSeq:WP_011565721.1
COORDINATES: protein motif:HMM:TIGR03423.1
COORDINATES: protein motif:HMM:NF013915.2
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: protein motif:HMM:NF013629.2
COORDINATES: protein motif:HMM:NF013465.2
metal ABC transporter substrate-binding protein
metal ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF013143.2
COORDINATES: protein motif:HMM:NF013827.2
rhomboid family intramembrane serine protease
COORDINATES: protein motif:HMM:NF027852.2
FlgT C-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR00587.1
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013632.2
COORDINATES: protein motif:HMM:NF041363.1
guanitoxin biosynthesis L-enduracididine beta-hydroxylase GntD
bifunctional diguanylate cyclase/phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_003111216.1
prepilin-type N-terminal cleavage/methylation domain-containing protein
COORDINATES: protein motif:HMM:TIGR02532.1
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:TIGR01420.1
type IV pilus twitching motility protein PilT
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564149.1
COORDINATES: protein motif:HMM:NF014164.2
COORDINATES: protein motif:HMM:NF012905.2
COORDINATES: similar to AA sequence:RefSeq:WP_016897736.1
GO:0003934 - GTP cyclohydrolase I activity [Evidence IEA]
GO:0042559 - pteridine-containing compound biosynthetic process [Evidence IEA]; GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024921.2
iron ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF022101.2
COORDINATES: protein motif:HMM:NF015213.2
GO:0033573 - high-affinity iron permease complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0005381 - iron ion transmembrane transporter activity [Evidence IEA]
GO:0034755 - iron ion transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013811.2
COORDINATES: protein motif:HMM:NF006048.0
COORDINATES: protein motif:HMM:NF024304.2
COORDINATES: protein motif:HMM:NF013315.2
GO:0004719 - protein-L-isoaspartate (D-aspartate) O-methyltransferase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
protein-L-isoaspartate(D-aspartate) O-methyltransferase
COORDINATES: protein motif:HMM:NF013936.2
COORDINATES: protein motif:HMM:TIGR03652.1
GO:0005506 - iron ion binding [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]
iron-sulfur cluster repair di-iron protein
COORDINATES: similar to AA sequence:RefSeq:WP_011564198.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565717.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563427.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565974.1
COORDINATES: protein motif:HMM:NF024934.2
COORDINATES: protein motif:HMM:NF025046.2
COORDINATES: protein motif:HMM:TIGR01580.1
GO:0009325 - nitrate reductase complex [Evidence IEA]
GO:0008940 - nitrate reductase activity [Evidence IEA]
GO:0009061 - anaerobic respiration [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01660.1
COORDINATES: protein motif:HMM:TIGR00684.1
GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051131 - chaperone-mediated protein complex assembly [Evidence IEA]
nitrate reductase molybdenum cofactor assembly chaperone
COORDINATES: protein motif:HMM:TIGR00351.1
GO:0019645 - anaerobic electron transport chain [Evidence IEA]
respiratory nitrate reductase subunit gamma
COORDINATES: protein motif:HMM:NF013117.2
mechanosensitive ion channel family protein
bifunctional L-myo-inositol-1-phosphate cytidylyltransferase/CDP-L-myo-inositol myo-inositolphosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011563676.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564175.1
COORDINATES: protein motif:HMM:NF012933.2
COORDINATES: protein motif:HMM:TIGR00149.1
secondary thiamine-phosphate synthase enzyme YjbQ
COORDINATES: similar to AA sequence:RefSeq:WP_011564083.1
COORDINATES: protein motif:HMM:TIGR00560.1
GO:0008444 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity [Evidence IEA]
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
COORDINATES: protein motif:HMM:NF014068.2
type 1 glutamine amidotransferase domain-containing protein
COORDINATES: protein motif:HMM:NF013506.2
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011564788.1
COORDINATES: protein motif:HMM:NF015925.2
COORDINATES: similar to AA sequence:RefSeq:WP_011565612.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563920.1
COORDINATES: protein motif:HMM:NF014703.2
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0050380 - undecaprenyl-diphosphatase activity [Evidence IEA]
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]; GO:0046677 - response to antibiotic [Evidence IEA]
COORDINATES: protein motif:HMM:NF008865.0
GO:0004664 - prephenate dehydratase activity [Evidence IEA]
GO:0009094 - L-phenylalanine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016924.2
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012534.2
COORDINATES: protein motif:HMM:NF024801.2
COORDINATES: protein motif:HMM:NF016202.2
peptidoglycan binding domain-containing protein
COORDINATES: protein motif:HMM:NF025939.2
COORDINATES: protein motif:HMM:NF024760.2
PrsW family intramembrane metalloprotease
COORDINATES: protein motif:HMM:NF014724.2
COORDINATES: protein motif:HMM:NF024954.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564242.1
COORDINATES: protein motif:HMM:NF012926.2
COORDINATES: protein motif:HMM:NF014683.2
GO:0015129 - lactate transmembrane transporter activity [Evidence IEA]
GO:0015727 - lactate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014376.2
COORDINATES: protein motif:HMM:NF006415.0
COORDINATES: similar to AA sequence:RefSeq:WP_011565589.1
COORDINATES: protein motif:HMM:NF013206.2
gamma-glutamyltransferase family protein
COORDINATES: protein motif:HMM:TIGR01229.1
GO:0004053 - arginase activity [Evidence IEA]
GO:0019547 - arginine catabolic process to ornithine [Evidence IEA]
COORDINATES: protein motif:HMM:NF014443.2
COORDINATES: protein motif:HMM:NF007034.0
GO:0015079 - potassium ion transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014325.2
COORDINATES: similar to AA sequence:RefSeq:WP_018287377.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564257.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
ADP-forming succinate--CoA ligase subunit beta
COORDINATES: protein motif:HMM:NF017368.2
COORDINATES: protein motif:HMM:NF016365.2
COORDINATES: protein motif:HMM:TIGR03081.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565421.1
COORDINATES: protein motif:HMM:NF022077.2
COORDINATES: protein motif:HMM:NF024844.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564271.1
GO:0016615 - malate dehydrogenase activity [Evidence IEA]
GO:0006108 - malate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02032.1
COORDINATES: protein motif:HMM:NF012311.2
COORDINATES: protein motif:HMM:NF012407.2
isocitrate/isopropylmalate dehydrogenase family protein
COORDINATES: protein motif:HMM:NF016060.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564281.1
GO:0004829 - threonine-tRNA ligase activity [Evidence IEA]
GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00168.2
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011564283.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564284.1
GO:0019843 - rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: protein motif:HMM:NF012797.2
COORDINATES: protein motif:HMM:TIGR00468.1
GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IEA]
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]
GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]
phenylalanine--tRNA ligase subunit alpha
COORDINATES: protein motif:HMM:TIGR00472.1
COORDINATES: protein motif:HMM:NF002003.0
GO:0003905 - alkylbase DNA N-glycosylase activity [Evidence IEA]
GO:0006284 - base-excision repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009567413.1
GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA]
GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: protein motif:HMM:NF013427.2
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014433.2
COORDINATES: similar to AA sequence:RefSeq:WP_011303857.1
GO:0042823 - pyridoxal phosphate biosynthetic process [Evidence IEA]
pyridoxal 5'-phosphate synthase lyase subunit PdxS
COORDINATES: similar to AA sequence:RefSeq:WP_011564298.1
pyridoxal 5'-phosphate synthase glutaminase subunit PdxT
COORDINATES: similar to AA sequence:RefSeq:WP_011564299.1
YebC/PmpR family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF037679.2
COORDINATES: protein motif:HMM:TIGR02727.1
GO:0030272 - 5-formyltetrahydrofolate cyclo-ligase activity [Evidence IEA]
GO:0006730 - one-carbon metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011564303.1
GO:0008821 - crossover junction endodeoxyribonuclease activity [Evidence IEA]
crossover junction endodeoxyribonuclease RuvC
COORDINATES: protein motif:HMM:NF001040.0
GO:0009379 - Holliday junction helicase complex [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0009378 - four-way junction helicase activity [Evidence IEA]
Holliday junction branch migration protein RuvA
COORDINATES: similar to AA sequence:RefSeq:WP_011564305.1
Holliday junction branch migration DNA helicase RuvB
COORDINATES: protein motif:HMM:NF002068.0
GO:0004160 - dihydroxy-acid dehydratase activity [Evidence IEA]
GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO:0009099 - valine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF022596.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564310.1
GO:0016853 - isomerase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
COORDINATES: protein motif:HMM:TIGR00430.1
GO:0008479 - queuine tRNA-ribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF037429.2
COORDINATES: protein motif:HMM:NF025933.2
COORDINATES: protein motif:HMM:TIGR01129.1
GO:0031522 - cell envelope Sec protein transport complex [Evidence IEA]
GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO:0043952 - protein transport by the Sec complex [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00966.2
COORDINATES: protein motif:HMM:NF015094.2
COORDINATES: protein motif:HMM:TIGR00691.1
bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
COORDINATES: protein motif:HMM:TIGR00442.1
GO:0004821 - histidine-tRNA ligase activity [Evidence IEA]
GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF001753.0
COORDINATES: protein motif:HMM:NF012730.2
GO:0009877 - nodulation [Evidence IEA]; GO:0009312 - oligosaccharide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014790.2
COORDINATES: protein motif:HMM:NF013672.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564331.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00420.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02980.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
SigB/SigF/SigG family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:TIGR00344.1
GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]
GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF015607.2
COORDINATES: protein motif:HMM:TIGR00247.1
GO:0008932 - lytic endotransglycosylase activity [Evidence IEA]
GO:0071555 - cell wall organization [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF001319.0
GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IEA]
GO:0019632 - shikimate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF004076.0
GO:0004750 - D-ribulose-phosphate 3-epimerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00326.1
GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]; GO:0008835 - diaminohydroxyphosphoribosylaminopyrimidine deaminase activity [Evidence IEA]
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
COORDINATES: protein motif:HMM:TIGR00187.1
COORDINATES: protein motif:HMM:NF006803.0
GO:0008686 - 3,4-dihydroxy-2-butanone-4-phosphate synthase activity [Evidence IEA]; GO:0003935 - GTP cyclohydrolase II activity [Evidence IEA]
bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II
COORDINATES: protein motif:HMM:NF000812.0
GO:0009349 - riboflavin synthase complex [Evidence IEA]
GO:0000906 - 6,7-dimethyl-8-ribityllumazine synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011564348.1
COORDINATES: protein motif:HMM:TIGR03599.1
COORDINATES: protein motif:HMM:NF008168.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF015559.2
GO:0052913 - 16S rRNA (guanine(966)-N(2))-methyltransferase activity [Evidence IEA]
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD
COORDINATES: similar to AA sequence:RefSeq:WP_011564353.1
GO:0004595 - pantetheine-phosphate adenylyltransferase activity [Evidence IEA]
GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]
pantetheine-phosphate adenylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011564356.1
COORDINATES: protein motif:HMM:NF014554.2
GO:0043811 - phosphate:acyl-[acyl carrier protein] acyltransferase activity [Evidence IEA]
GO:0008610 - lipid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF006829.0
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012901.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564360.1
COORDINATES: similar to AA sequence:RefSeq:WP_002442508.1
GO:0004316 - 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [Evidence IEA]
3-oxoacyl-[acyl-carrier-protein] reductase
COORDINATES: similar to AA sequence:RefSeq:WP_007830471.1
GO:0000036 - acyl carrier activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011564065.1
COORDINATES: protein motif:HMM:NF025973.2
COORDINATES: protein motif:HMM:TIGR00064.1
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005047 - signal recognition particle binding [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]
signal recognition particle-docking protein FtsY
COORDINATES: protein motif:HMM:TIGR00959.1
GO:0048501 - signal recognition particle, plasma membrane targeting [Evidence IEA]
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005048 - signal sequence binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011564368.1
COORDINATES: similar to AA sequence:RefSeq:WP_016290937.1
COORDINATES: protein motif:HMM:TIGR02273.1
GO:0006364 - rRNA processing [Evidence IEA]
Essential for efficient processing of 16S rRNA; Essential for efficient processing of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00088.1
GO:0052906 - tRNA (guanine(37)-N(1))-methyltransferase activity [Evidence IEA]
tRNA (guanosine(37)-N1)-methyltransferase TrmD
COORDINATES: similar to AA sequence:RefSeq:WP_011564372.1
COORDINATES: protein motif:HMM:NF000595.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF009154.0
GO:0004518 - nuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00368.1
YifB family Mg chelatase-like AAA ATPase
COORDINATES: protein motif:HMM:TIGR00732.1
GO:0009294 - DNA-mediated transformation [Evidence IEA]
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
FliA/WhiG family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_011564377.1
COORDINATES: similar to AA sequence:RefSeq:WP_018286770.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564379.1
GO:0033862 - UMP kinase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011564380.1
GO:0008135 - translation factor activity, RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00055.1
COORDINATES: protein motif:HMM:NF013327.2
COORDINATES: protein motif:HMM:TIGR00243.1
GO:0030604 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity [Evidence IEA]
GO:0019288 - isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [Evidence IEA]
1-deoxy-D-xylulose-5-phosphate reductoisomerase
COORDINATES: protein motif:HMM:NF014244.2
COORDINATES: protein motif:HMM:NF001540.0
GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity [Evidence IEA]
GO:0044237 - cellular metabolic process [Evidence IEA]
flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase
COORDINATES: protein motif:HMM:NF036577.2
COORDINATES: protein motif:HMM:TIGR01953.1
GO:0006353 - DNA-templated transcription termination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011564390.1
COORDINATES: protein motif:HMM:NF016351.2
COORDINATES: protein motif:HMM:TIGR00082.1
GO:0019843 - rRNA binding [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00431.1
GO:0004730 - pseudouridylate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004162.0
GO:0003919 - FMN adenylyltransferase activity [Evidence IEA]
bifunctional riboflavin kinase/FAD synthetase
COORDINATES: similar to AA sequence:RefSeq:WP_011564396.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564397.1
GO:0004654 - polyribonucleotide nucleotidyltransferase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0006402 - mRNA catabolic process [Evidence IEA]; GO:0006396 - RNA processing [Evidence IEA]
polyribonucleotide nucleotidyltransferase
COORDINATES: protein motif:HMM:NF017044.2
COORDINATES: protein motif:HMM:TIGR00649.1
COORDINATES: protein motif:HMM:NF013727.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564402.1
GO:0008094 - ATP-dependent activity, acting on DNA [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: protein motif:HMM:NF014668.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564404.1
GO:0006402 - mRNA catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00089.1
MiaB/RimO family radical SAM methylthiotransferase
COORDINATES: protein motif:HMM:NF013845.2
COORDINATES: protein motif:HMM:TIGR03156.1
COORDINATES: protein motif:HMM:NF013989.2
GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011564411.1
GO:0003999 - adenine phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012695.2
COORDINATES: protein motif:HMM:NF013250.2
GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: protein motif:HMM:TIGR03594.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
GO:0042254 - ribosome biogenesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF013702.2
lysophospholipid acyltransferase family protein
COORDINATES: protein motif:HMM:NF014300.2
GO:0004127 - cytidylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01356.1
GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IEA]
3-phosphoshikimate 1-carboxyvinyltransferase
COORDINATES: protein motif:HMM:TIGR00093.1
COORDINATES: protein motif:HMM:NF016005.2
COORDINATES: protein motif:HMM:NF014654.2
COORDINATES: protein motif:HMM:TIGR00518.1
GO:0000286 - alanine dehydrogenase activity [Evidence IEA]
GO:0006522 - alanine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024384.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564427.1
GO:0003883 - CTP synthase activity [Evidence IEA]
GO:0006241 - CTP biosynthetic process [Evidence IEA]; GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF022824.2
GO:0055070 - copper ion homeostasis [Evidence IEA]
COORDINATES: protein motif:HMM:NF040608.1
COORDINATES: protein motif:HMM:TIGR00634.1
COORDINATES: protein motif:HMM:NF039482.1
COORDINATES: protein motif:HMM:TIGR00478.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565679.1
COORDINATES: protein motif:HMM:TIGR01951.1
transcription antitermination factor NusB
COORDINATES: similar to AA sequence:RefSeq:WP_006858652.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01357.1
GO:0003856 - 3-dehydroquinate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013375.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564440.1
GO:0004107 - chorismate synthase activity [Evidence IEA]
GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016253.2
GO:0043683 - type IV pilus assembly [Evidence IEA]; GO:0043107 - type IV pilus-dependent motility [Evidence IEA]
COORDINATES: protein motif:HMM:NF022554.2
GO:0009297 - pilus assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF036822.2
COORDINATES: protein motif:HMM:TIGR00460.1
GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IEA]
GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF001159.1
GO:0042586 - peptide deformylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF036997.2
COORDINATES: protein motif:HMM:TIGR01034.1
GO:0004478 - methionine adenosyltransferase activity [Evidence IEA]
GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016051.2
phosphopantothenoylcysteine decarboxylase
COORDINATES: protein motif:HMM:TIGR00690.1
GO:0000345 - cytosolic DNA-directed RNA polymerase complex [Evidence IEA]
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
DNA-directed RNA polymerase subunit omega
COORDINATES: similar to AA sequence:RefSeq:WP_011564452.1
GO:0004385 - guanylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF005574.0
GO:0004152 - dihydroorotate dehydrogenase activity [Evidence IEA]
GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF021903.2
dihydroorotate dehydrogenase electron transfer subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011564456.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
carbamoyl-phosphate synthase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012053752.1
GO:0005951 - carbamoyl-phosphate synthase complex [Evidence IEA]
GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0009220 - pyrimidine ribonucleotide biosynthetic process [Evidence IEA]
glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
COORDINATES: protein motif:HMM:TIGR00857.1
COORDINATES: protein motif:HMM:TIGR00670.1
GO:0016597 - amino acid binding [Evidence IEA]; GO:0004070 - aspartate carbamoyltransferase activity [Evidence IEA]
GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IEA]; GO:0006520 - amino acid metabolic process [Evidence IEA]
aspartate carbamoyltransferase catalytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011564460.1
bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR
COORDINATES: protein motif:HMM:TIGR00005.1
GO:0009982 - pseudouridine synthase activity [Evidence IEA]
GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO:0009451 - RNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF016959.2
COORDINATES: protein motif:HMM:NF014389.2
COORDINATES: protein motif:HMM:TIGR00112.1
GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016363.2
COORDINATES: protein motif:HMM:TIGR00044.1
YggS family pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF014619.2
COORDINATES: similar to AA sequence:RefSeq:WP_006303882.1
GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01174.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0043093 - FtsZ-dependent cytokinesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF020067.2
FtsQ-type POTRA domain-containing protein
COORDINATES: protein motif:HMM:TIGR01082.1
GO:0008763 - UDP-N-acetylmuramate-L-alanine ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01133.1
UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
GO:0051301 - cell division [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01087.1
GO:0008764 - UDP-N-acetylmuramoylalanine-D-glutamate ligase activity [Evidence IEA]
UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
COORDINATES: protein motif:HMM:TIGR00445.1
GO:0008963 - phospho-N-acetylmuramoyl-pentapeptide-transferase activity [Evidence IEA]
phospho-N-acetylmuramoyl-pentapeptide- transferase
COORDINATES: protein motif:HMM:TIGR01143.1
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
COORDINATES: protein motif:HMM:NF016860.2
COORDINATES: protein motif:HMM:TIGR00006.1
GO:0016434 - rRNA (cytosine) methyltransferase activity [Evidence IEA]
16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
COORDINATES: protein motif:HMM:TIGR00242.1
GO:0051302 - regulation of cell division [Evidence IEA]
division/cell wall cluster transcriptional repressor MraZ
COORDINATES: protein motif:HMM:TIGR01391.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
COORDINATES: protein motif:HMM:NF002327.0
GO:0016793 - triphosphoric monoester hydrolase activity [Evidence IEA]
deoxyguanosinetriphosphate triphosphohydrolase
COORDINATES: protein motif:HMM:TIGR00613.1
COORDINATES: protein motif:HMM:TIGR00126.1
GO:0004139 - deoxyribose-phosphate aldolase activity [Evidence IEA]
GO:0009264 - deoxyribonucleotide catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF000908.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01354.1
GO:0004126 - cytidine deaminase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0009972 - cytidine deamination [Evidence IEA]
COORDINATES: protein motif:HMM:NF013391.2
GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014216.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004540 - ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019317.2
COORDINATES: similar to AA sequence:RefSeq:WP_002389231.1
COORDINATES: protein motif:HMM:NF020977.2
COORDINATES: protein motif:HMM:TIGR00046.1
COORDINATES: protein motif:HMM:TIGR00331.1
GO:0009408 - response to heat [Evidence IEA]
heat-inducible transcriptional repressor HrcA
COORDINATES: similar to AA sequence:RefSeq:WP_011564495.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013787.2
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000312 - plastid small ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01128.1
COORDINATES: protein motif:HMM:NF015714.2
COORDINATES: protein motif:HMM:TIGR00426.1
helix-hairpin-helix domain-containing protein
COORDINATES: protein motif:HMM:TIGR00090.1
GO:0043022 - ribosome binding [Evidence IEA]
GO:0017148 - negative regulation of translation [Evidence IEA]
COORDINATES: protein motif:HMM:NF000840.1
nicotinate-nucleotide adenylyltransferase
COORDINATES: protein motif:HMM:NF008954.0
COORDINATES: similar to AA sequence:RefSeq:WP_011564503.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564504.1
COORDINATES: protein motif:HMM:TIGR02210.1
GO:0008360 - regulation of cell shape [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03426.1
COORDINATES: protein motif:HMM:NF016011.2
COORDINATES: similar to AA sequence:RefSeq:WP_016292084.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564509.1
COORDINATES: protein motif:HMM:NF014591.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564511.1
GO:0004550 - nucleoside diphosphate kinase activity [Evidence IEA]
GO:0006165 - nucleoside diphosphate phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024183.2
COORDINATES: protein motif:HMM:TIGR01499.1
COORDINATES: protein motif:HMM:NF004349.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004832 - valine-tRNA ligase activity [Evidence IEA]
GO:0006438 - valyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018286217.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
ATP-dependent Clp protease ATP-binding subunit ClpX
COORDINATES: similar to AA sequence:RefSeq:WP_011564516.1
GO:0009368 - endopeptidase Clp complex [Evidence IEA]
GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
ATP-dependent Clp endopeptidase proteolytic subunit ClpP
COORDINATES: protein motif:HMM:TIGR00115.1
GO:0005854 - nascent polypeptide-associated complex [Evidence IEA]
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051083 - 'de novo' cotranslational protein folding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013188.2
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011563929.1
COORDINATES: protein motif:HMM:NF024110.2
COORDINATES: similar to AA sequence:RefSeq:WP_011565511.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565510.1
COORDINATES: protein motif:HMM:NF015995.2
COORDINATES: protein motif:HMM:NF008425.0
COORDINATES: protein motif:HMM:NF013044.2
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: protein motif:HMM:TIGR02360.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563188.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564545.1
tetrahydrofolate dehydrogenase/cyclohydrolase catalytic domain-containing protein
COORDINATES: protein motif:HMM:NF016825.2
cyclodeaminase/cyclohydrolase family protein
COORDINATES: protein motif:HMM:NF002937.0
GO:0030729 - acetoacetate-CoA ligase activity [Evidence IEA]
GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01460.1
COORDINATES: protein motif:HMM:NF012885.2
COORDINATES: protein motif:HMM:NF014805.2
biotin carboxylase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013491.2
PEP/pyruvate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF006153.0
GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011563751.1
COORDINATES: protein motif:HMM:TIGR02425.1
GO:0047575 - 4-carboxymuconolactone decarboxylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02427.1
GO:0047570 - 3-oxoadipate enol-lactonase activity [Evidence IEA]
GO:0042952 - beta-ketoadipate pathway [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02426.1
GO:0047472 - 3-carboxy-cis,cis-muconate cycloisomerase activity [Evidence IEA]
3-carboxy-cis,cis-muconate cycloisomerase
COORDINATES: protein motif:HMM:TIGR02423.1
GO:0018578 - protocatechuate 3,4-dioxygenase activity [Evidence IEA]
GO:0046278 - 3,4-dihydroxybenzoate metabolic process [Evidence IEA]
protocatechuate 3,4-dioxygenase subunit alpha
COORDINATES: protein motif:HMM:TIGR02422.1
protocatechuate 3,4-dioxygenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_011565016.1
COORDINATES: protein motif:HMM:NF013323.2
COORDINATES: protein motif:HMM:NF005085.0
GO:0003871 - 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0009086 - methionine biosynthetic process [Evidence IEA]
5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011565286.1
COORDINATES: protein motif:HMM:NF003807.0
COORDINATES: protein motif:HMM:NF028222.2
COORDINATES: similar to AA sequence:RefSeq:WP_011565174.1
COORDINATES: protein motif:HMM:NF037832.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564879.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564885.1
COORDINATES: protein motif:HMM:TIGR00067.1
GO:0008881 - glutamate racemase activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00023
COORDINATES: similar to AA sequence:RefSeq:WP_011564582.1
COORDINATES: protein motif:HMM:TIGR00358.1
GO:0016896 - exoribonuclease activity, producing 5'-phosphomonoesters [Evidence IEA]
GO:0006401 - RNA catabolic process [Evidence IEA]
VacB/RNase II family 3'-5' exoribonuclease
COORDINATES: protein motif:HMM:NF038347.1
permease-like cell division protein FtsX
COORDINATES: protein motif:HMM:TIGR02673.1
GO:0000910 - cytokinesis [Evidence IEA]; GO:0006810 - transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF022655.2
COORDINATES: protein motif:HMM:TIGR02196.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011563652.1
COORDINATES: protein motif:HMM:TIGR00815.1
GO:0015116 - sulfate transmembrane transporter activity [Evidence IEA]
GO:0008272 - sulfate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012602.2
COORDINATES: protein motif:HMM:NF015851.2
LysR substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF016064.2
YeeE/YedE thiosulfate transporter family protein
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011564598.1
GO:0003747 - translation release factor activity [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011564599.1
GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0017038 - protein import [Evidence IEA]; GO:0006605 - protein targeting [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00741.1
GO:0022626 - cytosolic ribosome [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA]
GO:0045182 - translation regulator activity [Evidence IEA]
GO:0009386 - translational attenuation [Evidence IEA]
ribosome-associated translation inhibitor RaiA
COORDINATES: protein motif:HMM:TIGR01770.1
COORDINATES: protein motif:HMM:NF005141.0
GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011564606.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564608.1
NADH-quinone oxidoreductase subunit NuoH
COORDINATES: protein motif:HMM:NF004739.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012549.2
COORDINATES: similar to AA sequence:RefSeq:WP_000236330.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoB
COORDINATES: protein motif:HMM:NF013696.2
COORDINATES: protein motif:HMM:NF006873.0
GO:0008760 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity [Evidence IEA]
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
COORDINATES: protein motif:HMM:TIGR01216.1
GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) [Evidence IEA]; GO:0045262 - plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
GO:0015986 - proton motive force-driven ATP synthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020045332.1
COORDINATES: protein motif:HMM:TIGR01146.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564618.1
COORDINATES: protein motif:HMM:NF012439.2
COORDINATES: protein motif:HMM:TIGR01144.1
GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045264 - plasma membrane proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]
COORDINATES: protein motif:HMM:NF012365.2
COORDINATES: protein motif:HMM:TIGR01131.1
COORDINATES: protein motif:HMM:NF021073.2
COORDINATES: protein motif:HMM:NF025793.2
COORDINATES: protein motif:HMM:NF001097.0
GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011563461.1
COORDINATES: protein motif:HMM:NF013468.2
COORDINATES: protein motif:HMM:TIGR00536.1
GO:0018364 - peptidyl-glutamine methylation [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
peptide chain release factor N(5)-glutamine methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011564630.1
GO:0016149 - translation release factor activity, codon specific [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011564632.1
COORDINATES: protein motif:HMM:TIGR00767.1
GO:0008186 - ATP-dependent activity, acting on RNA [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015290.2
GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00456.1
GO:0004814 - arginine-tRNA ligase activity [Evidence IEA]
GO:0006420 - arginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF022659.2
COORDINATES: protein motif:HMM:NF040503.1
arsinothricin resistance N-acetyltransferase ArsN1
COORDINATES: protein motif:HMM:NF014629.2
23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH
COORDINATES: protein motif:HMM:NF025049.2
COORDINATES: protein motif:HMM:NF019265.2
COORDINATES: protein motif:HMM:NF018961.2
COORDINATES: protein motif:HMM:NF016999.2
GO:0010468 - regulation of gene expression [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00629.1
GO:0006281 - DNA repair [Evidence IEA]; GO:0009650 - UV protection [Evidence IEA]
COORDINATES: protein motif:HMM:NF024773.2
COORDINATES: protein motif:HMM:NF017868.2
COORDINATES: protein motif:HMM:NF004126.0
GO:0046912 - acyltransferase activity, acyl groups converted into alkyl on transfer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011565738.1
COORDINATES: protein motif:HMM:NF012804.2
class II aldolase/adducin family protein
COORDINATES: protein motif:HMM:NF006189.0
bifunctional rhamnulose-1-phosphate aldolase/short-chain dehydrogenase
COORDINATES: protein motif:HMM:TIGR02635.1
GO:0008740 - L-rhamnose isomerase activity [Evidence IEA]
GO:0019299 - rhamnose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011564662.1
COORDINATES: protein motif:HMM:NF014801.2
COORDINATES: protein motif:HMM:NF018767.2
COORDINATES: protein motif:HMM:NF012669.2
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: protein motif:HMM:NF036578.2
alpha-L-rhamnosidase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF020120.2
family 78 glycoside hydrolase catalytic domain
COORDINATES: protein motif:HMM:NF001208.0
GO:0050218 - propionate-CoA ligase activity [Evidence IEA]
GO:0019629 - propionate catabolic process, 2-methylcitrate cycle [Evidence IEA]
COORDINATES: protein motif:HMM:NF018884.2
GO:0016791 - phosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00377.1
COORDINATES: protein motif:HMM:TIGR02087.1
catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011564670.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565671.1
COORDINATES: protein motif:HMM:NF014585.2
hydantoinase B/oxoprolinase family protein
COORDINATES: protein motif:HMM:NF014071.2
hydantoinase/oxoprolinase family protein
COORDINATES: protein motif:HMM:NF004283.0
COORDINATES: protein motif:HMM:NF005565.0
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: protein motif:HMM:NF018717.2
COORDINATES: protein motif:HMM:NF012656.2
COORDINATES: protein motif:HMM:NF024881.2
COORDINATES: protein motif:HMM:NF024748.2
COORDINATES: protein motif:HMM:NF009604.0
COORDINATES: similar to AA sequence:RefSeq:WP_011565773.1
GO:0008679 - 2-hydroxy-3-oxopropionate reductase activity [Evidence IEA]
GO:0019580 - galactarate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01722.1
CoA-acylating methylmalonate-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:NF016826.2
GO:0016861 - intramolecular oxidoreductase activity, interconverting aldoses and ketoses [Evidence IEA]
GO:0019310 - inositol catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04377.1
GO:0016823 - hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)
COORDINATES: similar to AA sequence:RefSeq:WP_011564698.1
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: protein motif:HMM:TIGR04382.1
GO:0047590 - 5-dehydro-2-deoxygluconokinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00502.1
GO:0004342 - glucosamine-6-phosphate deaminase activity [Evidence IEA]
GO:0006046 - N-acetylglucosamine catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012578.2
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01998.1
GO:0015572 - N-acetylglucosamine transmembrane transporter activity [Evidence IEA]
N-acetylglucosamine-specific PTS transporter subunit IIBC
COORDINATES: protein motif:HMM:TIGR01417.1
GO:0008965 - phosphoenolpyruvate-protein phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
phosphoenolpyruvate--protein phosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_004415108.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563367.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564814.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563365.1
COORDINATES: protein motif:HMM:TIGR01188.1
daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011564843.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: protein motif:HMM:NF012596.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564736.1
COORDINATES: protein motif:HMM:NF016993.2
GO:0010124 - phenylacetate catabolic process [Evidence IEA]
phenylacetate-CoA oxygenase subunit PaaI
COORDINATES: protein motif:HMM:NF013999.2
COORDINATES: protein motif:HMM:TIGR02262.1
GO:0016405 - CoA-ligase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011564726.1
COORDINATES: protein motif:HMM:NF014757.2
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001031939.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011564745.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564744.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565847.1
COORDINATES: protein motif:HMM:NF016910.2
COORDINATES: protein motif:HMM:NF014713.2
COORDINATES: protein motif:HMM:NF036876.2
COORDINATES: protein motif:HMM:NF001939.1
GO:0008726 - alkanesulfonate monooxygenase activity [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]
FMNH2-dependent alkanesulfonate monooxygenase
COORDINATES: protein motif:HMM:NF024846.2
COORDINATES: protein motif:HMM:NF013118.2
COORDINATES: protein motif:HMM:NF015325.2
COORDINATES: protein motif:HMM:TIGR04021.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0004497 - monooxygenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013328.2
DNA-formamidopyrimidine glycosylase family protein
COORDINATES: protein motif:HMM:NF015146.2
COORDINATES: protein motif:HMM:NF013340.2
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
YbhB/YbcL family Raf kinase inhibitor-like protein
COORDINATES: protein motif:HMM:NF024487.2
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015747.2
COORDINATES: similar to AA sequence:RefSeq:WP_011566054.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]
monovalent cation/H(+) antiporter subunit G
COORDINATES: similar to AA sequence:RefSeq:WP_011566055.1
GO:0015075 - monoatomic ion transmembrane transporter activity [Evidence IEA]
GO:0034220 - monoatomic ion transmembrane transport [Evidence IEA]
monovalent cation/H+ antiporter complex subunit F
COORDINATES: similar to AA sequence:RefSeq:WP_011566056.1
COORDINATES: similar to AA sequence:RefSeq:WP_011566057.1
COORDINATES: similar to AA sequence:RefSeq:WP_011566058.1
heavy-metal-associated domain-containing protein
COORDINATES: protein motif:HMM:TIGR00106.1
COORDINATES: protein motif:HMM:NF019318.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564781.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
DNA starvation/stationary phase protection protein
COORDINATES: similar to AA sequence:RefSeq:WP_011563992.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563165.1
cytochrome c biogenesis CcdA family protein
COORDINATES: protein motif:HMM:NF024853.2
COORDINATES: protein motif:HMM:NF015581.2
COORDINATES: protein motif:HMM:NF012612.2
COORDINATES: similar to AA sequence:RefSeq:WP_011563987.1
COORDINATES: protein motif:HMM:TIGR00571.1
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
Dam family site-specific DNA-(adenine-N6)-methyltransferase
COORDINATES: protein motif:HMM:NF014044.2
COORDINATES: protein motif:HMM:NF012336.2
COORDINATES: protein motif:HMM:NF013381.2
uroporphyrinogen decarboxylase family protein
COORDINATES: protein motif:HMM:NF020456.2
COORDINATES: protein motif:HMM:NF025888.2
phenylacetate--CoA ligase family protein
COORDINATES: protein motif:HMM:NF013068.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010078638.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF006771.0
COORDINATES: protein motif:HMM:NF013228.2
COORDINATES: protein motif:HMM:NF023222.2
4-hydroxyphenylacetate 3-hydroxylase family protein
COORDINATES: protein motif:HMM:NF013752.2
COORDINATES: protein motif:HMM:NF024729.2
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_011563230.1
COORDINATES: similar to AA sequence:RefSeq:WP_041359162.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011564723.1
COORDINATES: protein motif:HMM:NF013584.2
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A
COORDINATES: protein motif:HMM:NF015038.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564858.1
COORDINATES: protein motif:HMM:NF013335.2
COORDINATES: protein motif:HMM:NF016212.2
COORDINATES: similar to AA sequence:RefSeq:WP_011565428.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611739.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565206.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565208.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565209.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564576.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565211.1
COORDINATES: protein motif:HMM:TIGR00498.1
GO:0006282 - regulation of DNA repair [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011563512.1
COORDINATES: protein motif:HMM:TIGR00594.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564579.1
COORDINATES: protein motif:HMM:NF025038.2
COORDINATES: protein motif:HMM:NF013607.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564897.1
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011564896.1
COORDINATES: protein motif:HMM:NF024968.2
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: protein motif:HMM:NF014051.2
CpsD/CapB family tyrosine-protein kinase
COORDINATES: protein motif:HMM:NF014732.2
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
Wzz/FepE/Etk N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024627.2
COORDINATES: protein motif:HMM:NF012486.2
COORDINATES: protein motif:HMM:NF012760.2
COORDINATES: similar to AA sequence:RefSeq:WP_011563551.1
COORDINATES: protein motif:HMM:NF012422.2
COORDINATES: similar to AA sequence:RefSeq:WP_011563535.1
COORDINATES: protein motif:HMM:NF015535.2
COORDINATES: protein motif:HMM:NF041131.1
regulatory iron-sulfur-containing complex subunit RicT
COORDINATES: protein motif:HMM:NF024575.2
COORDINATES: protein motif:HMM:TIGR00041.1
GO:0004798 - thymidylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019342.2
gamma-glutamyl-gamma-aminobutyrate hydrolase family protein
COORDINATES: protein motif:HMM:NF005555.0
COORDINATES: protein motif:HMM:TIGR00374.1
lysylphosphatidylglycerol synthase transmembrane domain-containing protein
COORDINATES: protein motif:HMM:NF008978.0
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
decaprenyl-phosphate phosphoribosyltransferase
COORDINATES: protein motif:HMM:NF004749.0
GO:0046428 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity [Evidence IEA]
GO:0009234 - menaquinone biosynthetic process [Evidence IEA]
1,4-dihydroxy-2-naphthoate polyprenyltransferase
COORDINATES: protein motif:HMM:TIGR00945.1
GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]
COORDINATES: protein motif:HMM:NF025910.2
COORDINATES: protein motif:HMM:NF012568.2
COORDINATES: protein motif:HMM:NF013382.2
ubiquinone/menaquinone biosynthesis methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011564937.1
GO:0042286 - glutamate-1-semialdehyde 2,1-aminomutase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
glutamate-1-semialdehyde 2,1-aminomutase
COORDINATES: protein motif:HMM:NF006762.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004655 - porphobilinogen synthase activity [Evidence IEA]
GO:0033014 - tetrapyrrole biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01469.1
GO:0004851 - uroporphyrin-III C-methyltransferase activity [Evidence IEA]
GO:0019354 - siroheme biosynthetic process [Evidence IEA]
uroporphyrinogen-III C-methyltransferase
COORDINATES: protein motif:HMM:TIGR00212.1
GO:0004418 - hydroxymethylbilane synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01035.1
GO:0008883 - glutamyl-tRNA reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01470.1
bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase
COORDINATES: similar to AA sequence:RefSeq:WP_001612668.1
cyclic pyranopterin monophosphate synthase MoaC
COORDINATES: protein motif:HMM:TIGR00475.1
GO:0001514 - selenocysteine incorporation [Evidence IEA]; GO:0006414 - translational elongation [Evidence IEA]
selenocysteine-specific translation elongation factor
COORDINATES: protein motif:HMM:TIGR00474.1
GO:0004125 - L-seryl-tRNASec selenium transferase activity [Evidence IEA]
GO:0016260 - selenocysteine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03883.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563209.1
COORDINATES: protein motif:HMM:NF008653.0
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017442.2
COORDINATES: similar to AA sequence:RefSeq:WP_011563224.1
COORDINATES: protein motif:HMM:NF024863.2
COORDINATES: protein motif:HMM:NF013927.2
COORDINATES: protein motif:HMM:TIGR00810.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564965.1
GO:0004807 - triose-phosphate isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011564966.1
COORDINATES: similar to AA sequence:RefSeq:WP_011897301.1
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0019682 - glyceraldehyde-3-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
type I glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: protein motif:HMM:TIGR00647.1
GO:0043937 - regulation of sporulation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01826.1
glutathione S-transferase family protein
COORDINATES: protein motif:HMM:NF015620.2
COORDINATES: protein motif:HMM:NF001824.0
GO:0009380 - excinuclease repair complex [Evidence IEA]
GO:0009381 - excinuclease ABC activity [Evidence IEA]
GO:0006289 - nucleotide-excision repair [Evidence IEA]
COORDINATES: protein motif:HMM:NF013799.2
COORDINATES: protein motif:HMM:NF001503.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF037653.2
COORDINATES: protein motif:HMM:TIGR00836.1
COORDINATES: protein motif:HMM:NF003673.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013618.2
lytic transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:TIGR00152.1
GO:0004140 - dephospho-CoA kinase activity [Evidence IEA]
Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF005208.0
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012688.2
COORDINATES: protein motif:HMM:NF014447.2
GO:0008176 - tRNA (guanine-N7-)-methyltransferase activity [Evidence IEA]
tRNA (guanosine(46)-N7)-methyltransferase TrmB
COORDINATES: protein motif:HMM:NF024675.2
COORDINATES: similar to AA sequence:RefSeq:WP_011563353.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563354.1
branched-chain amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611121.1
COORDINATES: protein motif:HMM:NF013223.2
GO:0006811 - monoatomic ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF017634.2
COORDINATES: protein motif:HMM:NF026799.2
Brp/Blh family beta-carotene 15,15'-dioxygenase
COORDINATES: protein motif:HMM:NF009554.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0009374 - biotin binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004736 - pyruvate carboxylase activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0006090 - pyruvate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012922.2
GO:0004427 - inorganic diphosphate phosphatase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0006796 - phosphate-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011565003.1
GO:0008124 - 4-alpha-hydroxytetrahydrobiopterin dehydratase activity [Evidence IEA]
GO:0006729 - tetrahydrobiopterin biosynthetic process [Evidence IEA]
4a-hydroxytetrahydrobiopterin dehydratase
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: protein motif:HMM:NF012457.2
GO:0008422 - beta-glucosidase activity [Evidence IEA]
GO:0030245 - cellulose catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014609.2
PhzF family phenazine biosynthesis protein
COORDINATES: protein motif:HMM:NF027439.2
COORDINATES: similar to AA sequence:RefSeq:WP_002484357.1
GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein
COORDINATES: protein motif:HMM:NF025892.2
COORDINATES: similar to AA sequence:RefSeq:WP_011565395.1
COORDINATES: protein motif:HMM:NF011645.0
GO:0004451 - isocitrate lyase activity [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013442.2
GO:0004474 - malate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013884.2
COORDINATES: protein motif:HMM:NF013697.2
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
isocitrate/isopropylmalate family dehydrogenase
COORDINATES: protein motif:HMM:NF015818.2
low molecular weight protein-tyrosine-phosphatase
COORDINATES: protein motif:HMM:NF014034.2
COORDINATES: protein motif:HMM:NF021915.2
COORDINATES: protein motif:HMM:NF041212.1
Uxx-star family glutaredoxin-like (seleno)protein
COORDINATES: protein motif:HMM:NF002872.1
GO:0006002 - fructose 6-phosphate metabolic process [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF024772.2
COORDINATES: similar to AA sequence:RefSeq:WP_011565046.1
acetyl-CoA carboxylase carboxyltransferase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_011565047.1
acetyl-CoA carboxylase, carboxyltransferase subunit beta
COORDINATES: protein motif:HMM:NF012511.2
GO:0004834 - tryptophan synthase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018036536.1
COORDINATES: protein motif:HMM:NF012900.2
GO:0004640 - phosphoribosylanthranilate isomerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012444.2
COORDINATES: similar to AA sequence:RefSeq:WP_011565054.1
GO:0004048 - anthranilate phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00566.1
aminodeoxychorismate/anthranilate synthase component II
COORDINATES: protein motif:HMM:NF014476.2
COORDINATES: protein motif:HMM:TIGR01509.1
COORDINATES: protein motif:HMM:NF015999.2
COORDINATES: protein motif:HMM:NF021387.2
GO:0050043 - lactate racemase activity [Evidence IEA]
lactate racemase domain-containing protein
COORDINATES: protein motif:HMM:NF015438.2
COORDINATES: protein motif:HMM:NF022995.2
COORDINATES: protein motif:HMM:NF019605.2
COORDINATES: protein motif:HMM:TIGR00023.1
GO:0008374 - O-acyltransferase activity [Evidence IEA]
GO:0006654 - phosphatidic acid biosynthetic process [Evidence IEA]
glycerol-3-phosphate 1-O-acyltransferase PlsY
COORDINATES: similar to AA sequence:RefSeq:WP_011566022.1
COORDINATES: similar to AA sequence:RefSeq:WP_003210962.1
GO:0004049 - anthranilate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF002747.0
GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IEA]; GO:0004636 - phosphoribosyl-ATP diphosphatase activity [Evidence IEA]
bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE
COORDINATES: protein motif:HMM:NF013168.2
GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
imidazole glycerol phosphate synthase subunit HisF
COORDINATES: protein motif:HMM:TIGR01455.1
GO:0008966 - phosphoglucosamine mutase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002942223.1
COORDINATES: similar to AA sequence:RefSeq:WP_020063210.1
COORDINATES: protein motif:HMM:NF013742.2
COORDINATES: protein motif:HMM:TIGR00071.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565086.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0005762 - mitochondrial large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011565087.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
DNA-directed RNA polymerase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_019165370.1
GO:0015935 - small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011565089.1
COORDINATES: similar to AA sequence:RefSeq:WP_003128035.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003720928.1
COORDINATES: similar to AA sequence:RefSeq:WP_005909510.1
COORDINATES: protein motif:HMM:TIGR00500.1
COORDINATES: protein motif:HMM:TIGR01351.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019205 - nucleobase-containing compound kinase activity [Evidence IEA]
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00967.1
COORDINATES: similar to AA sequence:RefSeq:WP_010734454.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565096.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565097.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565098.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565099.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012015114.1
COORDINATES: similar to AA sequence:RefSeq:WP_003948630.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565102.1
COORDINATES: similar to AA sequence:RefSeq:WP_004268591.1
COORDINATES: similar to AA sequence:RefSeq:WP_007073026.1
COORDINATES: similar to AA sequence:RefSeq:WP_002514860.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565106.1
COORDINATES: similar to AA sequence:RefSeq:WP_013340739.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565108.1
COORDINATES: similar to AA sequence:RefSeq:WP_005897300.1
COORDINATES: similar to AA sequence:RefSeq:WP_000533767.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565111.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565112.1
COORDINATES: protein motif:HMM:NF012782.2
COORDINATES: similar to AA sequence:RefSeq:WP_011565114.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565115.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001040566.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565117.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054923.1
COORDINATES: similar to AA sequence:RefSeq:WP_005905437.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565120.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
DNA-directed RNA polymerase subunit beta'
COORDINATES: similar to AA sequence:RefSeq:WP_011565121.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0032549 - ribonucleoside binding [Evidence IEA]
DNA-directed RNA polymerase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_005599214.1
COORDINATES: protein motif:HMM:NF000955.1
GO:0015934 - large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011565124.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565125.1
COORDINATES: similar to AA sequence:RefSeq:WP_015539791.1
transcription termination/antitermination protein NusG
COORDINATES: protein motif:HMM:TIGR00964.1
COORDINATES: similar to AA sequence:RefSeq:WP_001265708.1
COORDINATES: protein motif:HMM:NF017774.2
COORDINATES: protein motif:HMM:TIGR00186.1
GO:0008173 - RNA methyltransferase activity [Evidence IEA]
GO:0009451 - RNA modification [Evidence IEA]
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB
COORDINATES: protein motif:HMM:TIGR00435.1
GO:0004817 - cysteine-tRNA ligase activity [Evidence IEA]
GO:0006423 - cysteinyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012951.2
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0043039 - tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011565133.1
GO:0008685 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity [Evidence IEA]
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
COORDINATES: protein motif:HMM:NF013308.2
GO:0050518 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity [Evidence IEA]
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
COORDINATES: protein motif:HMM:NF010009.0
DNA integrity scanning diadenylate cyclase DisA
COORDINATES: protein motif:HMM:TIGR00416.1
ATP-dependent Clp protease ATP-binding subunit
COORDINATES: protein motif:HMM:NF014031.2
GO:0017101 - aminoacyl-tRNA synthetase multienzyme complex [Evidence IEA]
GO:0004824 - lysine-tRNA ligase activity [Evidence IEA]
GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF001263.0
GO:0003677 - DNA binding [Evidence IEA]; GO:0070063 - RNA polymerase binding [Evidence IEA]
GO:0032784 - regulation of DNA-templated transcription elongation [Evidence IEA]
COORDINATES: protein motif:HMM:NF009855.0
COORDINATES: protein motif:HMM:TIGR01498.1
GO:0003848 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity [Evidence IEA]
GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase
COORDINATES: protein motif:HMM:TIGR01496.1
GO:0004156 - dihydropteroate synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017722022.1
GO:0006166 - purine ribonucleoside salvage [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02432.1
GO:0016879 - ligase activity, forming carbon-nitrogen bonds [Evidence IEA]
COORDINATES: protein motif:HMM:NF039426.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565581.1
GO:0050485 - oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor [Evidence IEA]
glycine/sarcosine/betaine reductase selenoprotein B family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002293105.1
COORDINATES: similar to AA sequence:RefSeq:WP_011566024.1
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF022114.2
Gmad2 immunoglobulin-like domain-containing protein
COORDINATES: protein motif:HMM:NF016155.2
COORDINATES: protein motif:HMM:NF010119.0
COORDINATES: protein motif:HMM:NF009911.0
4-hydroxy-3-methylbut-2-enyl diphosphate reductase
COORDINATES: protein motif:HMM:NF022681.2
COORDINATES: protein motif:HMM:TIGR00730.1
COORDINATES: protein motif:HMM:NF015232.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564889.1
COORDINATES: protein motif:HMM:NF016330.2
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025063.2
COORDINATES: similar to AA sequence:RefSeq:WP_011872576.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611187.1
COORDINATES: protein motif:HMM:NF021202.2
GO:0009307 - DNA restriction-modification system [Evidence IEA]
Alw26I/Eco31I/Esp3I family type II restriction endonuclease
COORDINATES: protein motif:HMM:NF024975.2
COORDINATES: protein motif:HMM:NF012372.2
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02987.1
Alw26I/Eco31I/Esp3I family type II restriction adenine-specific DNA-methyltransferase
COORDINATES: protein motif:HMM:NF005313.0
COORDINATES: protein motif:HMM:NF017365.2
delta(1)-pyrroline-2-carboxylate reductase family protein
COORDINATES: protein motif:HMM:NF012927.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564875.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564877.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564878.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564880.1
COORDINATES: protein motif:HMM:NF024139.2
COORDINATES: protein motif:HMM:NF014795.2
COORDINATES: protein motif:HMM:NF006101.0
GO:0071949 - FAD binding [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]; GO:0003959 - NADPH dehydrogenase activity [Evidence IEA]
bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase
COORDINATES: protein motif:HMM:NF024988.2
COORDINATES: protein motif:HMM:NF006107.0
COORDINATES: similar to AA sequence:RefSeq:WP_003512473.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565230.1
IS1182-like element ISRxy1 family transposase
COORDINATES: protein motif:HMM:TIGR00256.1
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF013670.2
COORDINATES: similar to AA sequence:RefSeq:WP_011565238.1
COORDINATES: similar to AA sequence:RefSeq:WP_005064559.1
COORDINATES: protein motif:HMM:TIGR03168.1
1-phosphofructokinase family hexose kinase
COORDINATES: protein motif:HMM:NF012970.2
D-alanyl-D-alanine carboxypeptidase family protein
COORDINATES: protein motif:HMM:NF012787.2
COORDINATES: protein motif:HMM:TIGR02127.1
GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015900354.1
COORDINATES: protein motif:HMM:TIGR00336.1
GO:0004588 - orotate phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014624.2
COORDINATES: protein motif:HMM:NF001126.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0008360 - regulation of cell shape [Evidence IEA]
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase
COORDINATES: similar to AA sequence:RefSeq:WP_011563864.1
GO:0016987 - sigma factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02074.1
COORDINATES: protein motif:HMM:NF001490.0
GO:0008252 - nucleotidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF010496.0
COORDINATES: protein motif:HMM:NF014289.2
GO:0018822 - nitrile hydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01323.1
GO:0050898 - nitrile metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: protein motif:HMM:NF009381.0
COORDINATES: similar to AA sequence:RefSeq:WP_011563843.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563994.1
COORDINATES: protein motif:HMM:TIGR03592.1
COORDINATES: protein motif:HMM:TIGR03182.1
GO:0045250 - cytosolic pyruvate dehydrogenase complex [Evidence IEA]
GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IEA]
GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IEA]
pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha
COORDINATES: protein motif:HMM:NF013854.2
GO:0016462 - pyrophosphatase activity [Evidence IEA]
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
COORDINATES: protein motif:HMM:NF002378.0
COORDINATES: similar to AA sequence:RefSeq:WP_011565272.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO
COORDINATES: protein motif:HMM:NF006070.0
COORDINATES: similar to AA sequence:RefSeq:WP_011565335.1
3-hydroxyacyl-CoA dehydrogenase family protein
COORDINATES: protein motif:HMM:NF013775.2
COORDINATES: protein motif:HMM:NF006181.0
COORDINATES: protein motif:HMM:NF014212.2
COORDINATES: protein motif:HMM:NF009093.0
GO:0003858 - 3-hydroxybutyrate dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019157.2
tannase/feruloyl esterase family alpha/beta hydrolase
COORDINATES: protein motif:HMM:NF024945.2
COORDINATES: protein motif:HMM:NF013488.2
2-hydroxychromene-2-carboxylate isomerase
COORDINATES: protein motif:HMM:NF020604.2
COORDINATES: protein motif:HMM:NF012401.2
COORDINATES: similar to AA sequence:RefSeq:WP_003887124.1
COORDINATES: protein motif:HMM:NF041052.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563952.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00976.1
COORDINATES: protein motif:HMM:TIGR01930.1
COORDINATES: protein motif:HMM:NF023899.2
carboxymuconolactone decarboxylase family protein
COORDINATES: protein motif:HMM:TIGR03666.1
COORDINATES: protein motif:HMM:NF007214.0
COORDINATES: protein motif:HMM:NF013782.2
COORDINATES: similar to AA sequence:RefSeq:WP_011563366.1
COORDINATES: protein motif:HMM:TIGR00640.1
cobalamin B12-binding domain-containing protein
COORDINATES: protein motif:HMM:NF004231.0
GO:0010181 - FMN binding [Evidence IEA]; GO:0004733 - pyridoxamine-phosphate oxidase activity [Evidence IEA]
GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF017856.2
COORDINATES: protein motif:HMM:NF014910.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
FAD-binding and (Fe-S)-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013377.2
GO:0004555 - alpha,alpha-trehalase activity [Evidence IEA]
N-acyl homoserine lactonase family protein
COORDINATES: protein motif:HMM:NF014832.2
GO:0016746 - acyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01836.1
class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC
COORDINATES: protein motif:HMM:TIGR01838.1
GO:0042619 - poly-hydroxybutyrate biosynthetic process [Evidence IEA]
class I poly(R)-hydroxyalkanoic acid synthase
COORDINATES: similar to AA sequence:RefSeq:WP_011563369.1
COORDINATES: similar to AA sequence:RefSeq:WP_016293398.1
COORDINATES: protein motif:HMM:TIGR02719.1
poly-beta-hydroxybutyrate-responsive repressor
COORDINATES: similar to AA sequence:RefSeq:WP_011565277.1
COORDINATES: protein motif:HMM:TIGR00693.1
GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF017501.2
COORDINATES: protein motif:HMM:NF037170.2
COORDINATES: protein motif:HMM:NF008455.0
GO:0046421 - methylisocitrate lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF009006.0
GO:0050440 - 2-methylcitrate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006943.0
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0047547 - 2-methylcitrate dehydratase activity [Evidence IEA]
GO:0019679 - propionate metabolic process, methylcitrate cycle [Evidence IEA]
bifunctional 2-methylcitrate dehydratase/aconitate hydratase
COORDINATES: similar to AA sequence:RefSeq:WP_011565965.1
COORDINATES: protein motif:HMM:NF011457.0
acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit
COORDINATES: protein motif:HMM:NF012981.2
GO:0003951 - NAD+ kinase activity [Evidence IEA]
GO:0006741 - NADP biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011565350.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030151 - molybdenum ion binding [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014697.2
COORDINATES: protein motif:HMM:NF008629.1
GO:0004519 - endonuclease activity [Evidence IEA]
cleaves DNA at apurinic or apyrimidinic sites; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00392.1
GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA]
GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014479.2
muconolactone Delta-isomerase family protein
COORDINATES: protein motif:HMM:TIGR00577.1
GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0019104 - DNA N-glycosylase activity [Evidence IEA]; GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity [Evidence IEA]; GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008534 - oxidized purine nucleobase lesion DNA N-glycosylase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0006284 - base-excision repair [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
COORDINATES: protein motif:HMM:TIGR00099.1
COORDINATES: protein motif:HMM:NF014215.2
COORDINATES: protein motif:HMM:NF015690.2
signal recognition particle sRNA large type
COORDINATES: nucleotide motif:Rfam:14.4:RF01854
COORDINATES: protein motif:HMM:NF004046.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: protein motif:HMM:TIGR01167.1
GO:0009986 - cell surface [Evidence IEA]
LPXTG cell wall anchor domain-containing protein
COORDINATES: protein motif:HMM:NF039694.1
COORDINATES: protein motif:HMM:NF039352.1
COORDINATES: protein motif:HMM:NF006099.0
COORDINATES: protein motif:HMM:NF006916.0
COORDINATES: protein motif:HMM:NF014132.2
SCP2 sterol-binding domain-containing protein
COORDINATES: protein motif:HMM:NF014618.2
COORDINATES: protein motif:HMM:NF012434.2
COORDINATES: similar to AA sequence:RefSeq:WP_011565409.1
GO:0004592 - pantoate-beta-alanine ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024231.2
COORDINATES: protein motif:HMM:TIGR01910.1
COORDINATES: protein motif:HMM:NF006052.0
GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014798.2
COORDINATES: similar to AA sequence:RefSeq:WP_018036474.1
COORDINATES: protein motif:HMM:NF021551.2
CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6
COORDINATES: protein motif:HMM:NF021207.2
COORDINATES: similar to AA sequence:RefSeq:WP_004126090.1
COORDINATES: protein motif:HMM:NF016179.2
COORDINATES: protein motif:HMM:TIGR03105.1
GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024912.2
glutamine amidotransferase family protein
COORDINATES: protein motif:HMM:NF013645.2
COORDINATES: protein motif:HMM:NF013784.2
FMN-binding glutamate synthase family protein
COORDINATES: protein motif:HMM:NF033580.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558336.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011565448.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565449.1
COORDINATES: protein motif:HMM:NF012544.2
COORDINATES: similar to AA sequence:RefSeq:WP_013161536.1
COORDINATES: similar to AA sequence:RefSeq:WP_006903157.1
COORDINATES: similar to AA sequence:RefSeq:WP_012161924.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016944.2
COORDINATES: protein motif:HMM:NF006086.0
COORDINATES: protein motif:HMM:NF038402.1
COORDINATES: protein motif:HMM:TIGR00750.1
GO:1903826 - L-arginine transmembrane transport [Evidence IEA]; GO:0015819 - lysine transport [Evidence IEA]; GO:0015822 - ornithine transport [Evidence IEA]
methylmalonyl Co-A mutase-associated GTPase MeaB
COORDINATES: similar to AA sequence:RefSeq:WP_000179874.1
GO:0045252 - oxoglutarate dehydrogenase complex [Evidence IEA]
GO:0004149 - dihydrolipoyllysine-residue succinyltransferase activity [Evidence IEA]
2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase
COORDINATES: protein motif:HMM:NF006914.0
GO:0004591 - oxoglutarate dehydrogenase (succinyl-transferring) activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
2-oxoglutarate dehydrogenase E1 component
COORDINATES: protein motif:HMM:NF013237.2
PLP-dependent aspartate aminotransferase family protein
COORDINATES: protein motif:HMM:NF014214.2
GO:0005615 - extracellular space [Evidence IEA]
GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF015168.2
COORDINATES: protein motif:HMM:NF012496.2
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]
GO:0045184 - establishment of protein localization [Evidence IEA]; GO:0016485 - protein processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011565624.1
COORDINATES: protein motif:HMM:NF024938.2
bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase
COORDINATES: protein motif:HMM:NF010925.0
GO:0033819 - lipoyl(octanoyl) transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011565474.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0016992 - lipoate synthase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0009107 - lipoate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01350.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015057.2
iron-containing redox enzyme family protein
molybdopterin converting factor subunit 1
COORDINATES: protein motif:HMM:NF014448.2
molybdenum cofactor biosynthesis protein MoaE
type II CAAX endopeptidase family protein
COORDINATES: protein motif:HMM:NF012506.2
COORDINATES: protein motif:HMM:NF009005.0
COORDINATES: protein motif:HMM:TIGR00200.1
COORDINATES: protein motif:HMM:TIGR00488.1
bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK
COORDINATES: protein motif:HMM:NF016214.2
COORDINATES: similar to AA sequence:RefSeq:WP_016627252.1
COORDINATES: protein motif:HMM:NF014709.2
COORDINATES: protein motif:HMM:NF014664.2
COORDINATES: similar to AA sequence:RefSeq:WP_011565874.1
GO:0070069 - cytochrome complex [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]
GO:0019646 - aerobic electron transport chain [Evidence IEA]
COORDINATES: protein motif:HMM:NF014678.2
COORDINATES: protein motif:HMM:NF013570.2
GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF005596.0
GO:0004401 - histidinol-phosphatase activity [Evidence IEA]
histidinol-phosphatase HisJ family protein
COORDINATES: protein motif:HMM:TIGR00378.1
GO:0015368 - calcium:monoatomic cation antiporter activity [Evidence IEA]
GO:0006816 - calcium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF025217.2
COORDINATES: protein motif:HMM:NF013411.2
COORDINATES: protein motif:HMM:TIGR00227.1
COORDINATES: protein motif:HMM:NF014233.2
GO:0004150 - dihydroneopterin aldolase activity [Evidence IEA]
GO:0006760 - folic acid-containing compound metabolic process [Evidence IEA]
1-acyl-sn-glycerol-3-phosphate acyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011564535.1
proline/glycine betaine ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_011564534.1
COORDINATES: protein motif:HMM:NF007746.0
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
COORDINATES: protein motif:HMM:NF010675.0
diphosphate--fructose-6-phosphate 1-phosphotransferase
COORDINATES: protein motif:HMM:NF020250.2
COORDINATES: protein motif:HMM:TIGR00486.1
GO:0051540 - metal cluster binding [Evidence IEA]
Nif3-like dinuclear metal center hexameric protein
COORDINATES: protein motif:HMM:TIGR01180.1
GO:0030246 - carbohydrate binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01695.1
GO:0034204 - lipid translocation [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
murein biosynthesis integral membrane protein MurJ
COORDINATES: similar to AA sequence:RefSeq:WP_011563726.1
COORDINATES: similar to AA sequence:RefSeq:WP_004717067.1
GlsB/YeaQ/YmgE family stress response membrane protein
COORDINATES: protein motif:HMM:TIGR00121.1
GO:0004077 - biotin-[acetyl-CoA-carboxylase] ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024583.2
GAF domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF036395.2
COORDINATES: protein motif:HMM:NF014592.2
S-adenosylmethionine:tRNA ribosyltransferase-isomerase
COORDINATES: protein motif:HMM:NF014173.2
COORDINATES: protein motif:HMM:NF014037.2
COORDINATES: protein motif:HMM:NF001862.0
GO:0004170 - dUTP diphosphatase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0006226 - dUMP biosynthetic process [Evidence IEA]; GO:0046081 - dUTP catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF018178.2
COORDINATES: similar to AA sequence:RefSeq:WP_015703970.1
GO:0008761 - UDP-N-acetylglucosamine 2-epimerase activity [Evidence IEA]
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
COORDINATES: similar to AA sequence:RefSeq:WP_011563156.1
COORDINATES: protein motif:HMM:NF001100.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0004825 - methionine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02170.1
GO:0050797 - thymidylate synthase (FAD) activity [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011563041.1
COORDINATES: protein motif:HMM:NF024804.2
COORDINATES: protein motif:HMM:NF039904.1
COORDINATES: protein motif:HMM:NF020397.2
COORDINATES: protein motif:HMM:NF013412.2
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: protein motif:HMM:NF015423.2
trimeric intracellular cation channel family protein
COORDINATES: protein motif:HMM:NF011648.0
GO:0015412 - ABC-type molybdate transporter activity [Evidence IEA]; GO:0030973 - molybdate ion binding [Evidence IEA]
GO:0015689 - molybdate ion transport [Evidence IEA]
molybdate ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:TIGR01581.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF040111.1
COORDINATES: protein motif:HMM:NF015056.2
COORDINATES: protein motif:HMM:NF024970.2
COORDINATES: protein motif:HMM:NF038011.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF028243.2
COORDINATES: protein motif:HMM:NF013868.2
COORDINATES: protein motif:HMM:NF023560.2
pyridoxal phosphate-dependent aminotransferase
COORDINATES: protein motif:HMM:TIGR01083.1
COORDINATES: protein motif:HMM:NF012562.2
COORDINATES: protein motif:HMM:NF024967.2
COORDINATES: protein motif:HMM:NF025559.2
L-2-amino-thiazoline-4-carboxylic acid hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_011564218.1
COORDINATES: protein motif:HMM:TIGR00937.1
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013954.2
GO:0004040 - amidase activity [Evidence IEA]
glucosaminidase domain-containing protein
COORDINATES: protein motif:HMM:TIGR03025.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
COORDINATES: protein motif:HMM:TIGR00696.1
WecB/TagA/CpsF family glycosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011565627.1
COORDINATES: protein motif:HMM:NF019351.2
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02246.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565493.1
COORDINATES: protein motif:HMM:NF012262.2
cytochromesubunit B of the bc complex-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_011565876.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
cytochrome b N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011565878.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565879.1
COORDINATES: protein motif:HMM:NF006129.0
thiamine pyrophosphate-requiring protein
COORDINATES: protein motif:HMM:NF015444.2
COORDINATES: protein motif:HMM:NF013358.2
COORDINATES: similar to AA sequence:RefSeq:WP_013674546.1
4Fe-4S dicluster domain-containing protein
COORDINATES: protein motif:HMM:NF013460.2
COORDINATES: protein motif:HMM:NF016843.2
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011563658.1
COORDINATES: protein motif:HMM:NF009466.0
COORDINATES: protein motif:HMM:NF012913.2
COORDINATES: similar to AA sequence:RefSeq:WP_012204015.1
COORDINATES: protein motif:HMM:NF014542.2
COORDINATES: similar to AA sequence:RefSeq:WP_011563215.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564671.1
COORDINATES: protein motif:HMM:NF004885.0
COORDINATES: similar to AA sequence:RefSeq:WP_006785305.1
GO:0016836 - hydro-lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF005495.0
COORDINATES: protein motif:HMM:NF019499.2
vitamin K epoxide reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011564435.1
COORDINATES: protein motif:HMM:NF024640.2
prenyltransferase/squalene oxidase repeat-containing protein
COORDINATES: protein motif:HMM:NF013226.2
COORDINATES: protein motif:HMM:TIGR01926.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
This protein belongs to a clade of uncharacterized proteins related to peroxidases such as the alkylhydroperoxidase AhpD; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF010588.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003952 - NAD+ synthase (glutamine-hydrolyzing) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014841.2
COORDINATES: protein motif:HMM:NF013741.2
COORDINATES: protein motif:HMM:NF010147.0
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
iron-sulfur cluster insertion protein ErpA
COORDINATES: protein motif:HMM:NF023418.2
transglutaminase domain-containing protein
COORDINATES: protein motif:HMM:NF013998.2
COORDINATES: protein motif:HMM:NF019346.2
COORDINATES: protein motif:HMM:NF025637.2
COORDINATES: protein motif:HMM:NF019375.2
GO:0050334 - thiaminase activity [Evidence IEA]
GO:0006772 - thiamine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF017917.2
COORDINATES: protein motif:HMM:TIGR01379.1
GO:0009030 - thiamine-phosphate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02359.1
GO:0005215 - transporter activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]; GO:0006810 - transport [Evidence IEA]
energy coupling factor transporter S component ThiW
COORDINATES: similar to AA sequence:RefSeq:WP_011565713.1
GO:0004417 - hydroxyethylthiazole kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00097.1
GO:0008902 - hydroxymethylpyrimidine kinase activity [Evidence IEA]; GO:0008972 - phosphomethylpyrimidine kinase activity [Evidence IEA]
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
GO:0015234 - thiamine transmembrane transporter activity [Evidence IEA]
GO:0015888 - thiamine transport [Evidence IEA]
energy-coupled thiamine transporter ThiT
COORDINATES: similar to AA sequence:RefSeq:WP_011564176.1
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011565856.1
COORDINATES: protein motif:HMM:NF013871.2
COORDINATES: protein motif:HMM:TIGR00342.1
GO:0009228 - thiamine biosynthetic process [Evidence IEA]; GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF010480.0
GO:0071949 - FAD binding [Evidence IEA]; GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011563426.1
COORDINATES: protein motif:HMM:TIGR00077.1
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: protein motif:HMM:NF036806.2
COORDINATES: protein motif:HMM:NF021505.2
COORDINATES: protein motif:HMM:NF025178.2
COORDINATES: protein motif:HMM:NF005558.0
COORDINATES: similar to AA sequence:RefSeq:WP_000280860.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004797 - thymidine kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014774.2
heterodisulfide reductase-related iron-sulfur binding cluster
FAD-linked oxidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011565144.1
COORDINATES: protein motif:HMM:NF006055.0
COORDINATES: protein motif:HMM:TIGR03196.1
COORDINATES: protein motif:HMM:TIGR00801.1
nucleobase:cation symporter-2 family protein
COORDINATES: protein motif:HMM:NF020907.2
GO:0019628 - urate catabolic process [Evidence IEA]
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase
COORDINATES: protein motif:HMM:NF012601.2
COORDINATES: protein motif:HMM:TIGR03383.1
GO:0004846 - urate oxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02962.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565766.1
GO:0004038 - allantoinase activity [Evidence IEA]; GO:0050897 - cobalt ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0000256 - allantoin catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024307.2
COORDINATES: protein motif:HMM:NF012412.2
COORDINATES: protein motif:HMM:NF009007.0
GO:0008804 - carbamate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01505.1
COORDINATES: protein motif:HMM:NF008431.0
GO:0009436 - glyoxylate catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025042.2
COORDINATES: protein motif:HMM:TIGR00464.1
GO:0009332 - glutamate-tRNA ligase complex [Evidence IEA]
GO:0004818 - glutamate-tRNA ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013286.2
COORDINATES: protein motif:HMM:NF013766.2
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: protein motif:HMM:NF008909.0
COORDINATES: protein motif:HMM:NF020398.2
COORDINATES: protein motif:HMM:NF024579.2
COORDINATES: protein motif:HMM:NF006417.0
vitamin B12-dependent ribonucleotide reductase
COORDINATES: similar to AA sequence:RefSeq:WP_011565795.1
GO:0140110 - transcription regulator activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF040501.1
arsenic resistance N-acetyltransferase ArsN2
COORDINATES: similar to AA sequence:RefSeq:WP_011565802.1
GO:0004055 - argininosuccinate synthase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006526 - arginine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010888350.1
COORDINATES: protein motif:HMM:NF014864.2
regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR01850.1
GO:0003942 - N-acetyl-gamma-glutamyl-phosphate reductase activity [Evidence IEA]
GO:0006592 - ornithine biosynthetic process [Evidence IEA]
N-acetyl-gamma-glutamyl-phosphate reductase
COORDINATES: protein motif:HMM:TIGR00120.1
GO:0004358 - glutamate N-acetyltransferase activity [Evidence IEA]
bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ
COORDINATES: protein motif:HMM:NF012899.2
GO:0003991 - acetylglutamate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00707.1
COORDINATES: protein motif:HMM:NF001986.0
GO:0004585 - ornithine carbamoyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01976.1
COORDINATES: protein motif:HMM:TIGR01923.1
GO:0008756 - o-succinylbenzoate-CoA ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01927.1
COORDINATES: similar to AA sequence:RefSeq:WP_016079909.1
GO:0008935 - 1,4-dihydroxy-2-naphthoyl-CoA synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03695.1
GO:0070205 - 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase activity [Evidence IEA]
2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase
COORDINATES: protein motif:HMM:NF018446.2
COORDINATES: similar to AA sequence:RefSeq:WP_011565816.1
GO:0070204 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylic-acid synthase activity [Evidence IEA]
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase
COORDINATES: protein motif:HMM:TIGR00543.1
GO:0008909 - isochorismate synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011565361.1
COORDINATES: protein motif:HMM:NF014669.2
COORDINATES: protein motif:HMM:TIGR00700.1
GO:0003867 - 4-aminobutyrate transaminase activity [Evidence IEA]
GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IEA]
4-aminobutyrate--2-oxoglutarate transaminase
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_011563565.1
COORDINATES: protein motif:HMM:NF002564.0
GO:0008783 - agmatinase activity [Evidence IEA]
GO:0008295 - spermidine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF005102.0
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011565831.1
spermidine/putrescine ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF010000.0
COORDINATES: protein motif:HMM:NF024241.2
COORDINATES: similar to AA sequence:RefSeq:WP_002387688.1
COORDINATES: protein motif:HMM:NF002852.0
GO:0003842 - 1-pyrroline-5-carboxylate dehydrogenase activity [Evidence IEA]
GO:0006562 - proline catabolic process [Evidence IEA]
L-glutamate gamma-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:NF013761.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564746.1
COORDINATES: protein motif:HMM:NF024952.2
COORDINATES: protein motif:HMM:NF017085.2
COORDINATES: protein motif:HMM:NF014373.2
COORDINATES: protein motif:HMM:NF003921.0
GO:0009358 - polyphosphate kinase complex [Evidence IEA]
GO:0008976 - polyphosphate kinase activity [Evidence IEA]
GO:0006799 - polyphosphate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013426.2
COORDINATES: protein motif:HMM:NF013430.2
COORDINATES: protein motif:HMM:NF024179.2
COORDINATES: protein motif:HMM:NF014307.2
NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta
LuxR C-terminal-related transcriptional regulator
COORDINATES: protein motif:HMM:TIGR00306.2
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
COORDINATES: protein motif:HMM:NF002528.0
D-alanine--D-alanine ligase family protein
COORDINATES: protein motif:HMM:NF014269.2
LON peptidase substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011565634.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565635.1
ubiquinol-cytochrome c reductase iron-sulfur subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011565637.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565638.1
COORDINATES: protein motif:HMM:NF013056.2
COORDINATES: similar to AA sequence:RefSeq:WP_011565534.1
COORDINATES: protein motif:HMM:NF015721.2
Asp23/Gls24 family envelope stress response protein
COORDINATES: protein motif:HMM:NF039399.1
COORDINATES: protein motif:HMM:NF014600.2
COORDINATES: protein motif:HMM:TIGR00685.1
GO:0004805 - trehalose-phosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013173.2
COORDINATES: similar to AA sequence:RefSeq:WP_011565892.1
COORDINATES: protein motif:HMM:NF013324.2
COORDINATES: similar to AA sequence:RefSeq:WP_000651987.1
COORDINATES: protein motif:HMM:NF005906.0
DEDD exonuclease domain-containing protein
COORDINATES: protein motif:HMM:NF025873.2
COORDINATES: protein motif:HMM:NF015418.2
COORDINATES: protein motif:HMM:TIGR00557.1
GO:0050570 - 4-hydroxythreonine-4-phosphate dehydrogenase activity [Evidence IEA]
4-hydroxythreonine-4-phosphate dehydrogenase PdxA
COORDINATES: protein motif:HMM:NF018682.2
four-carbon acid sugar kinase family protein
COORDINATES: protein motif:HMM:NF017652.2
3-keto-5-aminohexanoate cleavage protein
COORDINATES: protein motif:HMM:NF014628.2
COORDINATES: protein motif:HMM:TIGR00273.1
GO:0019516 - lactate oxidation [Evidence IEA]
LutB/LldF family L-lactate oxidation iron-sulfur protein
COORDINATES: protein motif:HMM:NF015948.2
COORDINATES: similar to AA sequence:RefSeq:WP_011563932.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565922.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563076.1
COORDINATES: protein motif:HMM:NF019305.2
COORDINATES: protein motif:HMM:NF019850.2
COORDINATES: similar to AA sequence:RefSeq:WP_011563183.1
HAMP domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF015378.2
COORDINATES: similar to AA sequence:RefSeq:WP_011563911.1
COORDINATES: protein motif:HMM:NF006058.0
GO:0008838 - diaminopropionate ammonia-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011563861.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563860.1
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF020650.2
COORDINATES: protein motif:HMM:NF014670.2
COORDINATES: protein motif:HMM:NF012584.2
COORDINATES: similar to AA sequence:RefSeq:WP_011565345.1
COORDINATES: protein motif:HMM:NF013832.2
COORDINATES: protein motif:HMM:NF033503.1
nickel pincer cofactor biosynthesis protein LarB
COORDINATES: protein motif:HMM:TIGR02258.1
GO:0008664 - 2'-5'-RNA ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00147.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564179.1
COORDINATES: similar to AA sequence:RefSeq:WP_011563056.1
magnesium and cobalt transport protein CorA
COORDINATES: protein motif:HMM:NF005057.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0008986 - pyruvate, water dikinase activity [Evidence IEA]; GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]; GO:0006090 - pyruvate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF027567.2
COORDINATES: protein motif:HMM:NF021378.2
COORDINATES: protein motif:HMM:NF013179.2
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03558.1
COORDINATES: protein motif:HMM:NF014740.2
nucleoside-diphosphate sugar epimerase/dehydratase
COORDINATES: protein motif:HMM:NF013146.2
COORDINATES: protein motif:HMM:NF017206.2
COORDINATES: protein motif:HMM:NF016145.2
polysaccharide pyruvyl transferase family protein
COORDINATES: protein motif:HMM:NF013830.2
COORDINATES: similar to AA sequence:RefSeq:WP_011566010.1
COORDINATES: similar to AA sequence:RefSeq:WP_011566008.1
COORDINATES: protein motif:HMM:NF015527.2
sulfotransferase family 2 domain-containing protein
COORDINATES: protein motif:HMM:TIGR01214.1
GO:0008831 - dTDP-4-dehydrorhamnose reductase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011565073.1
COORDINATES: similar to AA sequence:RefSeq:WP_011565154.1
COORDINATES: protein motif:HMM:TIGR03026.1
UDP-glucose/GDP-mannose dehydrogenase family protein
COORDINATES: protein motif:HMM:NF025877.2
COORDINATES: similar to AA sequence:RefSeq:WP_001764656.1
GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005133346.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
glucose-1-phosphate thymidylyltransferase RfbA
COORDINATES: similar to AA sequence:RefSeq:WP_020801803.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00260.1
GO:0004795 - threonine synthase activity [Evidence IEA]
GO:0009088 - threonine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00191.1
GO:0004413 - homoserine kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00118.1
GO:0005948 - acetolactate synthase complex [Evidence IEA]
GO:0003984 - acetolactate synthase activity [Evidence IEA]
biosynthetic-type acetolactate synthase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011566039.1
COORDINATES: protein motif:HMM:NF005146.0
GO:0004084 - branched-chain-amino-acid transaminase activity [Evidence IEA]
GO:0009081 - branched-chain amino acid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF002086.0
GO:0003852 - 2-isopropylmalate synthase activity [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]; GO:0009098 - leucine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00169.1
GO:0003862 - 3-isopropylmalate dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00977.1
GO:0043714 - (R)-citramalate synthase activity [Evidence IEA]
GO:0009097 - isoleucine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF006130.0
FAD-dependent tricarballylate dehydrogenase TcuA
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF033668.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF019194.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564770.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564771.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564772.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564773.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564774.1
COORDINATES: protein motif:HMM:NF015970.2
COORDINATES: protein motif:HMM:TIGR03965.1
GO:0140604 - mycofactocin biosynthetic process [Evidence IEA]
Members of this protein family, MftF, are glycosyltransferases, members of PF00535 (glycosyl transferase family 2). The encoding gene is found as part of the mycofactocin cassette, in Mycobacterium tuberculosis, many other Actinobacteria, and occasional members of other lineages. Mycofactocin itself, a putative redox carrier, is a heavily modified derivative of the C-terminal Val-Tyr dipeptide of the mycofactocin precursor MftA (TIGR03969); Derived by automated computational analysis using gene prediction method: Protein Homology.
mycofactocin biosynthesis glycosyltransferase MftF
COORDINATES: protein motif:HMM:TIGR03964.1
mycofactocin biosynthesis peptidyl-dipeptidase MftE
COORDINATES: protein motif:HMM:TIGR03966.1
MftD, an enzyme found in the mycofactocin biosynthesis locus, performs an oxidative deamination of 3-amino-5-[(p-hydroxyphenyl)methyl]-4, 4-dimethyl-2-pyrrolidinone (AHDP). The resulting compound, now called pre-mycofactocin (PMFT), is a biologically active redox cofactor that can oxidize the non-exchangeable NADH of TIGR03971 family SDR-type oxidoreductases.; MftD, an enzyme found in the mycofactocin biosynthesis locus, performs an oxidative deamination of 3-amino-5-[(p-hydroxyphenyl)methyl]-4, 4-dimethyl-2-pyrrolidinone (AHDP). The resulting compound, now called pre-mycofactocin (PMFT), is a biologically active redox cofactor that can oxidize the non-exchangeable NADH of TIGR03971 family SDR-type oxidoreductases.; MftD, an enzyme found in the mycofactocin biosynthesis locus, performs an oxidative deamination of 3-amino-5-[(p-hydroxyphenyl)methyl]-4, 4-dimethyl-2-pyrrolidinone (AHDP). The resulting compound, now called pre-mycofactocin (PMFT), is a biologically active redox cofactor that can oxidize the non-exchangeable NADH of TIGR03971 family SDR-type oxidoreductases; Derived by automated computational analysis using gene prediction method: Protein Homology.
mycofactocin biosynthesis FMN-dependent deaminase MftD
COORDINATES: protein motif:HMM:TIGR03989.1
COORDINATES: protein motif:HMM:TIGR03962.1
GO:0140604 - mycofactocin biosynthetic process [Evidence IEA]; GO:0031179 - peptide modification [Evidence IEA]
MftC is a radical SAM/SPASM enzyme that catalyzes the first two steps in biosynthesis of the electron carrier mycofactocin from the terminal Val-Tyr dipeptide of the precursor peptide MftA.; MftC is a radical SAM/SPASM enzyme that catalyzes the first two steps in biosynthesis of the electron carrier mycofactocin from the terminal Val-Tyr dipeptide of the precursor peptide MftA; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR03967.1
MftB, a small protein, is a peptide chaperone that assists the radical SAM enzyme MftC in performing two modifications to the C-terminal Val-Tyr dipeptide of the mycofactocin precursor peptide, MftA. MftB's role is analogous to the role of PqqD in the biosynthesis of PQQ, a cofactor that derives entirely from a Tyr and a Glu in the precursor PqqA; Derived by automated computational analysis using gene prediction method: Protein Homology.
mycofactocin biosynthesis chaperone MftB
COORDINATES: protein motif:HMM:NF009467.0
mycofactocin-coupled SDR family oxidoreductase
Mycofactocin is a small molecule electron carrier derived from the final two amino acids, Val-Tyr, of MftA, the mycofactocin precursor. It plays a role in redox homeostasis and the metabolism of alcohols and aldehydes in Actinobacteria, including Mycobacterium tuberculosis; Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013704.2
COORDINATES: protein motif:HMM:NF012686.2
COORDINATES: protein motif:HMM:NF015649.2
COORDINATES: protein motif:HMM:NF011539.0
bifunctional 3'-5' exonuclease/DNA polymerase
COORDINATES: protein motif:HMM:NF012356.2
COORDINATES: protein motif:HMM:TIGR00276.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0052693 - epoxyqueuosine reductase activity [Evidence IEA]
GO:0008616 - queuosine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012451.2
COORDINATES: protein motif:HMM:NF013591.2
GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008241 - peptidyl-dipeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF037026.2
COORDINATES: protein motif:HMM:NF003995.0
redox-sensing transcriptional repressor Rex
COORDINATES: similar to AA sequence:RefSeq:WP_011566093.1
GO:0019464 - glycine decarboxylation via glycine cleavage system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011566094.1
GO:0004047 - aminomethyltransferase activity [Evidence IEA]
glycine cleavage system aminomethyltransferase GcvT
COORDINATES: protein motif:HMM:NF003346.0
GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IEA]
GO:0006546 - glycine catabolic process [Evidence IEA]
aminomethyl-transferring glycine dehydrogenase subunit GcvPB
COORDINATES: protein motif:HMM:NF014408.2
aminomethyl-transferring glycine dehydrogenase subunit GcvPA
COORDINATES: nucleotide motif:Rfam:14.4:RF00504
glycine riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF004713.0
COORDINATES: protein motif:HMM:TIGR00908.1
GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF007495.0
GO:0000049 - tRNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014089.2
COORDINATES: similar to AA sequence:RefSeq:WP_011566112.1
GO:0004823 - leucine-tRNA ligase activity [Evidence IEA]
GO:0006429 - leucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014049.2
COORDINATES: protein motif:HMM:NF024299.2
COORDINATES: protein motif:HMM:TIGR00638.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_012096464.1
COORDINATES: protein motif:HMM:NF014575.2
GO:0005575 - cellular_component [Evidence IEA]
GO:0046118 - 7-methylguanosine biosynthetic process [Evidence IEA]; GO:0031167 - rRNA methylation [Evidence IEA]
16S rRNA (guanine(527)-N(7))-methyltransferase RsmG
COORDINATES: protein motif:HMM:NF024483.2
RNA-binding cell elongation regulator Jag/EloR
COORDINATES: similar to AA sequence:RefSeq:WP_011566123.1
membrane protein insertion efficiency factor YidD
COORDINATES: protein motif:HMM:NF013022.2
GO:0004526 - ribonuclease P activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011566125.1