Komagataeibacter nataicola strain RZS01 plasmid pKNA05, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.
Submitted (15-FEB-2017) Chemicobiolgy and Functional Materials Institute, Nanjing University of Science and Technology, No. 200, Xiaolingwei Road, Nanjing, Jiangsu 210094, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP019880.1.\nBacteria available from Chemicobiology and Functional Materials\nInstitute of Nanjing University of Science and Technology (No.200,\nXiaolingwei Road, Nanjing, China).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0\nGenome Coverage :: 76X\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 04:44:33\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,601\nCDSs (total) :: 3,523\nGenes (coding) :: 3,405\nCDSs (with protein) :: 3,405\nGenes (RNA) :: 78\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 4\nPseudo Genes (total) :: 118\nCDSs (without protein) :: 118\nPseudo Genes (ambiguous residues) :: 0 of 118\nPseudo Genes (frameshifted) :: 57 of 118\nPseudo Genes (incomplete) :: 81 of 118\nPseudo Genes (internal stop) :: 21 of 118\nPseudo Genes (multiple problems) :: 36 of 118\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008261343.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016736.2
COORDINATES: protein motif:HMM:NF022086.2
COORDINATES: similar to AA sequence:RefSeq:WP_012223140.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018585.2
COORDINATES: similar to AA sequence:RefSeq:WP_010512043.1
COORDINATES: similar to AA sequence:RefSeq:WP_012606126.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025742.2
COORDINATES: protein motif:HMM:NF021583.2
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF040148.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.