Komagataeibacter nataicola strain RZS01 plasmid pKNA03, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.
Submitted (15-FEB-2017) Chemicobiolgy and Functional Materials Institute, Nanjing University of Science and Technology, No. 200, Xiaolingwei Road, Nanjing, Jiangsu 210094, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP019878.1.\nBacteria available from Chemicobiology and Functional Materials\nInstitute of Nanjing University of Science and Technology (No.200,\nXiaolingwei Road, Nanjing, China).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0\nGenome Coverage :: 76X\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 04:44:33\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,601\nCDSs (total) :: 3,523\nGenes (coding) :: 3,405\nCDSs (with protein) :: 3,405\nGenes (RNA) :: 78\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 4\nPseudo Genes (total) :: 118\nCDSs (without protein) :: 118\nPseudo Genes (ambiguous residues) :: 0 of 118\nPseudo Genes (frameshifted) :: 57 of 118\nPseudo Genes (incomplete) :: 81 of 118\nPseudo Genes (internal stop) :: 21 of 118\nPseudo Genes (multiple problems) :: 36 of 118\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_019088721.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010665981.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007396251.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813386.1
COORDINATES: similar to AA sequence:RefSeq:WP_010518137.1
COORDINATES: similar to AA sequence:RefSeq:WP_010511277.1
COORDINATES: similar to AA sequence:RefSeq:WP_003630657.1
COORDINATES: similar to AA sequence:RefSeq:WP_008832586.1
COORDINATES: similar to AA sequence:RefSeq:WP_013041578.1
COORDINATES: similar to AA sequence:RefSeq:WP_012554518.1
COORDINATES: similar to AA sequence:RefSeq:WP_019092484.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019092577.1
COORDINATES: similar to AA sequence:RefSeq:WP_019092386.1
ClC family H(+)/Cl(-) exchange transporter
COORDINATES: similar to AA sequence:RefSeq:WP_010500952.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_019086695.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012223140.1
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011749831.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_007396037.1
GO:0004803 - transposase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015951463.1
COORDINATES: similar to AA sequence:RefSeq:WP_019088727.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813401.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824467.1
COORDINATES: similar to AA sequence:RefSeq:WP_019088725.1
COORDINATES: similar to AA sequence:RefSeq:WP_019088724.1
COORDINATES: similar to AA sequence:RefSeq:WP_019088722.1
COORDINATES: similar to AA sequence:RefSeq:WP_010668423.1
COORDINATES: similar to AA sequence:RefSeq:WP_010512615.1
type II toxin-antitoxin system VapB family antitoxin
Ti-type conjugative transfer relaxase TraA
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.