Komagataeibacter nataicola strain RZS01 plasmid pKNA02, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.
Submitted (15-FEB-2017) Chemicobiolgy and Functional Materials Institute, Nanjing University of Science and Technology, No. 200, Xiaolingwei Road, Nanjing, Jiangsu 210094, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP019877.1.\nBacteria available from Chemicobiology and Functional Materials\nInstitute of Nanjing University of Science and Technology (No.200,\nXiaolingwei Road, Nanjing, China).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0\nGenome Coverage :: 76X\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 04:44:33\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,601\nCDSs (total) :: 3,523\nGenes (coding) :: 3,405\nCDSs (with protein) :: 3,405\nGenes (RNA) :: 78\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 4\nPseudo Genes (total) :: 118\nCDSs (without protein) :: 118\nPseudo Genes (ambiguous residues) :: 0 of 118\nPseudo Genes (frameshifted) :: 57 of 118\nPseudo Genes (incomplete) :: 81 of 118\nPseudo Genes (internal stop) :: 21 of 118\nPseudo Genes (multiple problems) :: 36 of 118\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_019092586.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_019087453.1
type II toxin-antitoxin system HicA family toxin
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: similar to AA sequence:RefSeq:WP_014106245.1
GO:0015293 - symporter activity [Evidence IEA]
cation:dicarboxylase symporter family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_014106246.1
COORDINATES: similar to AA sequence:RefSeq:WP_015073739.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015821555.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011982806.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611976.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014814.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017276173.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_003631008.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007284615.1
COORDINATES: similar to AA sequence:RefSeq:WP_004167347.1
COORDINATES: similar to AA sequence:RefSeq:WP_010512412.1
COORDINATES: similar to AA sequence:RefSeq:WP_019092484.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019092577.1
COORDINATES: similar to AA sequence:RefSeq:WP_018307960.1
GO:0015074 - DNA integration [Evidence IEA]
phage integrase N-terminal SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015072467.1
DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015075058.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006560188.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006560184.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612098.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018860470.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF025587.2
2-oxoglutarate and iron-dependent oxygenase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010511393.1
COORDINATES: similar to AA sequence:RefSeq:WP_010511395.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010511397.1
COORDINATES: similar to AA sequence:RefSeq:WP_007396253.1
COORDINATES: similar to AA sequence:RefSeq:WP_012228322.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014106244.1
COORDINATES: protein motif:HMM:NF014653.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019088886.1