Komagataeibacter saccharivorans strain JH1 plasmid p4904, complete sequence.
type: Entry
definition: Komagataeibacter saccharivorans strain JH1 plasmid p4904, complete sequence.
sequence version: NZ_CP036411.1
sequence date: 2023-04-19
sequence: sequence
division: CON
label: NZ_CP036411.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN10963708
keyword: RefSeq
source: Komagataeibacter saccharivorans
organism: Komagataeibacter saccharivorans
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP036411.1.\nBacteria and source DNA available from Prof. Dr. Rolf Daniel.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.4\nGenome Coverage :: missing\nSequencing Technology :: Illumina; NanoPore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/19/2023 01:36:45\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,464\nCDSs (total) :: 3,388\nGenes (coding) :: 3,300\nCDSs (with protein) :: 3,300\nGenes (RNA) :: 76\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 4\nPseudo Genes (total) :: 88\nCDSs (without protein) :: 88\nPseudo Genes (ambiguous residues) :: 0 of 88\nPseudo Genes (frameshifted) :: 43 of 88\nPseudo Genes (incomplete) :: 56 of 88\nPseudo Genes (internal stop) :: 30 of 88\nPseudo Genes (multiple problems) :: 32 of 88\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 4904
topology: circular
so has quality: SO_0000988
location: 1..4904
location: region:1-4904:1
RO_0002162: 265959

NZ_CP036411
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN10963708
type: BioSample
SIO_000068: biosample

1
title: Draft Genome Sequence of Komagataeibacter saccharivorans strain JH1
author: Hollensteiner, J.
author: Poehlein, A.
author: Kloskowski, P.
author: Ali, T.T.
author: Daniel, R.
journal: Unpublished

2
title: Direct Submission
author: Hollensteiner, J.
author: Poehlein, A.
author: Kloskowski, P.
author: Ali, T.T.
author: Daniel, R.
journal: Submitted (22-FEB-2019) Department of Genomic and Applied Microbiology, Georg-August University Goettingen, Institute of Microbiology and Genetics, Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4904:1
position: 4904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4904:1:source
so part of: sequence
organism: Komagataeibacter saccharivorans
mol type: genomic DNA
strain: JH1
isolation source: fruit fly
plasmid: p4904
country: Germany: Goettingen

265959
type: Taxonomy
SIO_000068: taxonomy

KSAC_RS17040
type: Gene
subclass of: SO_0000704
RO_0002162: 265959
locus tag: KSAC_RS17040
so part of: sequence
location: complement(join(4781..4904,1..746))
location: region:1-4904:-1
so has part: feature:1-746:-1:exon
so has part: feature:4781-4904:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4904:-1
position: 4904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-746:-1:exon

position:746:-1
position: 746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4781-4904:-1:exon

position:4781:-1
position: 4781
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

KSAC_RS17040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 265959
locus tag: KSAC_RS17040
EC number: 2.1.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016050601.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO process: GO:0009307 - DNA restriction-modification system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific DNA-methyltransferase
translation: MATTTKKIVRLERDSDAVMAVQNNLKFMRPLKDGSMKLIVTSPPYNIGKAYEKRTTLEKYVQDQTQVITECVRLLDERGSLCWQVGNHVQNGEIFPLDTVLYHIFKDHGLKLRNRIIWHFEHGLHSKNRLSGRYETIMWFTKGDDYTFNLDPIRVPSKYPNKKYYKGPKAGQLSGNPLGKNPGDIWIFPNVKNNHVEKTIHPCQFPVELVERLVLSLTDEGDNVFDPYMGVGSSIVAAIKNNRIGYGCDVVKEYVDIAWERVHDFRAGTLETRPMNKPVYDPSLPRGGH
SIO_010081: KSAC_RS17040
subclass of: SO_0000673
so part of: KSAC_RS17040
location: complement(join(4781..4904,1..746))
location: region:1-4904:-1
so has part: feature:1-746:-1:exon
so has part: feature:4781-4904:-1:exon

WP_132307091.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-746:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4781-4904:-1:exon

KSAC_RS17045
type: Gene
subclass of: SO_0000704
RO_0002162: 265959
gene: mobQ
locus tag: KSAC_RS17045
old locus tag: KSAC_34920
so part of: sequence
location: complement(804..1823)
location: region:804-1823:-1
so has part: feature:804-1823:-1:exon
subclass of: SO_0000010

position:804:-1
position: 804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1823:-1
position: 1823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:804-1823:-1:exon

KSAC_RS17045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 265959
gene: mobQ
locus tag: KSAC_RS17045
old locus tag: KSAC_34920
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003627465.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobQ family relaxase
translation: MAICHFEVKAVSRATGRSAVAAAAYRTGETLTNDRDGVTHDYAKRTGVNGKFVVVPSGCEWAADRSKLWNAAEATERRKDAKVAREYVVAIPHELDAPARESLVRGFAESIVERFGVAADVALHAPGKDGDKRNYHAHILTTTRVVEPDGLGAKTRQLDVASTAAVEVSSLRELWAMQCNEALEKNHQKARVEPRSYAAQGIDRVPGVHLGPEATAIERREQKAQGQNYKPRTFKAKQNAAAAESNAVIDAAKKLIDAAEQVITRATSAAKEVVDWFSSLAQSVGSATIEKEQKERTEKEARERQKAQEIAKEQEEYRKRLQEIAQRREQDRGRRGRGR
SIO_010081: KSAC_RS17045
subclass of: SO_0000673
so part of: KSAC_RS17045
location: complement(804..1823)
location: region:804-1823:-1
so has part: feature:804-1823:-1:exon

WP_132307079.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:804-1823:-1:exon

KSAC_RS17050
type: Gene
subclass of: SO_0000704
RO_0002162: 265959
locus tag: KSAC_RS17050
old locus tag: KSAC_34930
so part of: sequence
location: 1988..2275
location: region:1988-2275:1
so has part: feature:1988-2275:1:exon
subclass of: SO_0000010

position:1988:1
position: 1988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2275:1
position: 2275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1988-2275:1:exon

KSAC_RS17050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 265959
locus tag: KSAC_RS17050
old locus tag: KSAC_34930
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003627463.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: mobilization protein
translation: MAKTTAEIVAEEKKKIEQAKARIQAAMAKDSAKERKLDTRRKVILGGLLMDNAKRDPSWNRALTALIKKVSRENDLKAFEGYEIPELPSTPSENQ
SIO_010081: KSAC_RS17050
subclass of: SO_0000673
so part of: KSAC_RS17050
location: 1988..2275
location: region:1988-2275:1
so has part: feature:1988-2275:1:exon

WP_132307081.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1988-2275:1:exon

KSAC_RS17055
type: Gene
subclass of: SO_0000704
RO_0002162: 265959
locus tag: KSAC_RS17055
old locus tag: KSAC_34940
so part of: sequence
location: 2272..2778
location: region:2272-2778:1
so has part: feature:2272-2778:1:exon
subclass of: SO_0000010

position:2272:1
position: 2272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2778:1
position: 2778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2272-2778:1:exon

KSAC_RS17055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 265959
locus tag: KSAC_RS17055
old locus tag: KSAC_34940
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003627461.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication protein
translation: MTTGAERGQQLFADLLETMQRTTATMERLDAEQKNQCRTIEQAADRASKTAEDAAEAFAVSKPRLMIWTALCAAMLVCAGWLLGYWVGHRDGWASGDASGYRQAIAANAAASWANTPSGQLALEMDEDGLLQPLAHCNLPGYAAKYDPKAKRSFCYPTQNASGWAVTP
SIO_010081: KSAC_RS17055
subclass of: SO_0000673
so part of: KSAC_RS17055
location: 2272..2778
location: region:2272-2778:1
so has part: feature:2272-2778:1:exon

WP_132307083.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2272-2778:1:exon

KSAC_RS17060
type: Gene
subclass of: SO_0000704
RO_0002162: 265959
locus tag: KSAC_RS17060
old locus tag: KSAC_34950
so part of: sequence
location: 3175..3738
location: region:3175-3738:1
so has part: feature:3175-3738:1:exon
subclass of: SO_0000010

position:3175:1
position: 3175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3738:1
position: 3738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3175-3738:1:exon

KSAC_RS17060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 265959
locus tag: KSAC_RS17060
old locus tag: KSAC_34950
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011251600.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MSLEPQIQIATPPTGTWVQTERAAHERWSILAVENPRAAALLHVIIAKMGRHNALVASQETLSTLTKCSTRTVRRSLQVLKEENWIEIRQVGASGTVNAYIVNDRVAWSGARDGIRYSLFSAAVLVSDHEQPDNADIGVQPPLEHIPSLQPGERQLPTGPGMPPPSQPSLEGLEPDLPATSRDKSAQ
SIO_010081: KSAC_RS17060
subclass of: SO_0000673
so part of: KSAC_RS17060
location: 3175..3738
location: region:3175-3738:1
so has part: feature:3175-3738:1:exon

WP_132307085.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3175-3738:1:exon

KSAC_RS17065
type: Gene
subclass of: SO_0000704
RO_0002162: 265959
locus tag: KSAC_RS17065
so part of: sequence
location: 3741..4136
location: region:3741-4136:1
so has part: feature:3741-4136:1:exon
subclass of: SO_0000010

position:3741:1
position: 3741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4136:1
position: 4136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3741-4136:1:exon

KSAC_RS17065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 265959
locus tag: KSAC_RS17065
inference: COORDINATES: protein motif:HMM:NF024139.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MHTPQHMSPAQAAQAANTSRWTIMRAIKSQDLQAFRDNKNQWRIKTDDLNAWLSAHTAQCAHTEQEDNHAHQMHTPAHHEPIAVDRLELIRVKAELEAEKTLRATIEADRDHWRELAQKLADVRPRKWWFW
SIO_010081: KSAC_RS17065
subclass of: SO_0000673
so part of: KSAC_RS17065
location: 3741..4136
location: region:3741-4136:1
so has part: feature:3741-4136:1:exon

WP_165927405.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3741-4136:1:exon

KSAC_RS17070
type: Gene
subclass of: SO_0000704
RO_0002162: 265959
locus tag: KSAC_RS17070
old locus tag: KSAC_34970
so part of: sequence
location: complement(4170..4781)
location: region:4170-4781:-1
so has part: feature:4170-4781:-1:exon
subclass of: SO_0000010

position:4170:-1
position: 4170
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4170-4781:-1:exon

KSAC_RS17070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 265959
locus tag: KSAC_RS17070
old locus tag: KSAC_34970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015106973.1
GO function: GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
GO process: GO:0009307 - DNA restriction-modification system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BglII/BstYI family type II restriction endonuclease
translation: MKIVQYYSHLNGFEFIKYHKPHVWDELESVINDVDAEKCRTKSSGEARKAGKTLYSPVDMNKEFLSLFGERGWSERRVTNWLAEDVTLLRHIMTLEPKDQKEMIEAKGLEPLMTYNQTDFVKDRVAVEIQFGKYSFVAHDLFVKHMSFFIADDIDVGIEVVPMKSMEREMSSGVPYYERDLFNLMRQGRGIPAVPIILVGVAP
SIO_010081: KSAC_RS17070
subclass of: SO_0000673
so part of: KSAC_RS17070
location: complement(4170..4781)
location: region:4170-4781:-1
so has part: feature:4170-4781:-1:exon

WP_132307089.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4170-4781:-1:exon