Komagataeibacter saccharivorans strain JH1 plasmid p5317, complete sequence.
type: Entry
definition: Komagataeibacter saccharivorans strain JH1 plasmid p5317, complete sequence.
sequence version: NZ_CP036410.1
sequence date: 2023-04-19
sequence: sequence
division: CON
label: NZ_CP036410.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN10963708
keyword: RefSeq
source: Komagataeibacter saccharivorans
organism: Komagataeibacter saccharivorans
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP036410.1.\nBacteria and source DNA available from Prof. Dr. Rolf Daniel.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.4\nGenome Coverage :: missing\nSequencing Technology :: Illumina; NanoPore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/19/2023 01:36:45\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,464\nCDSs (total) :: 3,388\nGenes (coding) :: 3,300\nCDSs (with protein) :: 3,300\nGenes (RNA) :: 76\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 4\nPseudo Genes (total) :: 88\nCDSs (without protein) :: 88\nPseudo Genes (ambiguous residues) :: 0 of 88\nPseudo Genes (frameshifted) :: 43 of 88\nPseudo Genes (incomplete) :: 56 of 88\nPseudo Genes (internal stop) :: 30 of 88\nPseudo Genes (multiple problems) :: 32 of 88\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 5317
topology: circular
so has quality: SO_0000988
location: 1..5317
location: region:1-5317:1
RO_0002162: 265959

NZ_CP036410
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN10963708
type: BioSample
SIO_000068: biosample

1
title: Draft Genome Sequence of Komagataeibacter saccharivorans strain JH1
author: Hollensteiner, J.
author: Poehlein, A.
author: Kloskowski, P.
author: Ali, T.T.
author: Daniel, R.
journal: Unpublished

2
title: Direct Submission
author: Hollensteiner, J.
author: Poehlein, A.
author: Kloskowski, P.
author: Ali, T.T.
author: Daniel, R.
journal: Submitted (22-FEB-2019) Department of Genomic and Applied Microbiology, Georg-August University Goettingen, Institute of Microbiology and Genetics, Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5317:1
position: 5317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5317:1:source
so part of: sequence
organism: Komagataeibacter saccharivorans
mol type: genomic DNA
strain: JH1
isolation source: fruit fly
plasmid: p5317
country: Germany: Goettingen

265959
type: Taxonomy
SIO_000068: taxonomy

KSAC_RS17015
type: Gene
subclass of: SO_0000704
RO_0002162: 265959
gene: traA
locus tag: KSAC_RS17015
so part of: sequence
location: complement(join(4352..5317,1..1398))
location: region:1-5317:-1
so has part: feature:1-1398:-1:exon
so has part: feature:4352-5317:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5317:-1
position: 5317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1398:-1:exon

position:1398:-1
position: 1398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4352-5317:-1:exon

position:4352:-1
position: 4352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

KSAC_RS17015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 265959
gene: traA
locus tag: KSAC_RS17015
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: Ti-type conjugative transfer relaxase TraA
translation: MTPDRAPARLKDRQTLWNEVEATEKRINSQLAREVEVAIPRELSPDDRVALVRQFVREQFVSRGMIADFAIHVPKASDGEEAPHAHILLTMREVGPDGFERKQRAWNERGVHEEWRAGWEQAANDMLRARGFEARIDRRSNKDRKRVFEPSLHEGASWQERRRKRAAGIEPAGVVARRVEENEARRARNQARIEANPAIVLVELTHHHSTFTERDVARVLNRYVDDERAFLNLKARVLEHDEAVKLGLDEAGRTRYSTRAQVAVERDILEIGDRLNSRVDSRRFDRGKVANYLSGRGLSEEQMQAVLHLVGGEGLLLASGIAGAGKTTMLRGAVDVWRGGGYQPRGVALAAAAASVLEAETGMQSQTAARLLRRLDLGEEKLSPKDVIVLDEAGMLHSRHMRRMMAHVEKAGAKLVMVGDSEQIQAVEAGAPFRALEARLGAARLEETRRQRSHGDRAATVAFSTGRTASGLGHYDRKGDIIPLQTRDRMLQAAARGYLEDRAEQGADKVLLLAHRRKDVDALNRMIRDHLVRQGSVEEGRSYVLSHGERPLGRGDSIVFLRNDYRQGLRNGMTGEVISAGDQLKVRAGKREILINPREYPYLDHAYARTLHKGQGATAERAHVVLTGSMDRNLTYVGMTRHRQSVRAYWARDEEGSREQLVKQLGRSGLKDMTTDYAEARGMQPPAGKEAMSFLGRIRKGIERRREERKMDAMRQAARKLGVLGQAHAALRQRMAEEQKRREEEAARQAELAKKRALEEAKRRRIAEYRRREREREERSRSRTPWD
SIO_010081: KSAC_RS17015
subclass of: SO_0000673
so part of: KSAC_RS17015
location: complement(join(4352..5317,1..1398))
location: region:1-5317:-1
so has part: feature:1-1398:-1:exon
so has part: feature:4352-5317:-1:exon

WP_243705452.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1398:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4352-5317:-1:exon

KSAC_RS17020
type: Gene
subclass of: SO_0000704
RO_0002162: 265959
locus tag: KSAC_RS17020
old locus tag: KSAC_34860
so part of: sequence
location: 1731..2252
location: region:1731-2252:1
so has part: feature:1731-2252:1:exon
subclass of: SO_0000010

position:1731:1
position: 1731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2252:1
position: 2252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1731-2252:1:exon

KSAC_RS17020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 265959
locus tag: KSAC_RS17020
old locus tag: KSAC_34860
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MATALARMERATETAKEAVRQVEIATQKAEVAARRLQKRTGWAKRDETRRKIVLGSQLLWMRDTGDAQTTAIVGLMLSHMKGLLRDGERELLDQIGTDKPPSHQQVTQCKTALGGLLIAIARQGENSGSFEAADDGPMLWSHLARDIGRVAIGELYRSHDIRLFKGWEITPNG
SIO_010081: KSAC_RS17020
subclass of: SO_0000673
so part of: KSAC_RS17020
location: 1731..2252
location: region:1731-2252:1
so has part: feature:1731-2252:1:exon

WP_132307073.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1731-2252:1:exon

KSAC_RS17025
type: Gene
subclass of: SO_0000704
RO_0002162: 265959
locus tag: KSAC_RS17025
old locus tag: KSAC_34870
so part of: sequence
location: 2245..2958
location: region:2245-2958:1
so has part: feature:2245-2958:1:exon
subclass of: SO_0000010

position:2245:1
position: 2245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2958:1
position: 2958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2245-2958:1:exon

KSAC_RS17025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 265959
locus tag: KSAC_RS17025
old locus tag: KSAC_34870
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDEDYAFIEKLAQTLEQVLAQIDEGRQQNILLGQHIVQFDRAAASLESMKKTVDFFNANTRNVVAGMNGLSDTLSRYDNATKTHALVFDNAADRAVKAAAALEETTQKKQKQSLIWVGGMVMVVALIIGAISYFEGKSVGAAMGQEAINAREYEDGRVQGFKEGQMSGKKEALDIATAASWANTPNGYRAYLMDKSGDLNSILECSRPGWTKETQPGGNVMCYPRSAKDGLYGWVVR
SIO_010081: KSAC_RS17025
subclass of: SO_0000673
so part of: KSAC_RS17025
location: 2245..2958
location: region:2245-2958:1
so has part: feature:2245-2958:1:exon

WP_132307075.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2245-2958:1:exon

KSAC_RS17030
type: Gene
subclass of: SO_0000704
RO_0002162: 265959
locus tag: KSAC_RS17030
old locus tag: KSAC_34890
so part of: sequence
location: 3391..3945
location: region:3391-3945:1
so has part: feature:3391-3945:1:exon
subclass of: SO_0000010

position:3391:1
position: 3391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3945:1
position: 3945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3391-3945:1:exon

KSAC_RS17030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 265959
locus tag: KSAC_RS17030
old locus tag: KSAC_34890
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007425151.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAATITRLTSKPERLRQDQADLLRQALLPFEEQMPADAFRAVIGLIDRQTASRKRWTFVMLSPEQNAIVVDYLAEHSKRPLTALRVWALCFKHLRTDTGEILLTRDEIAEKIGQPSRTISEIMSELVAFRAITRTRQKVSGMKGPGMVHYFMNPNVATHLSGSERDAAQGEAPPLLVLMEGGKP
SIO_010081: KSAC_RS17030
subclass of: SO_0000673
so part of: KSAC_RS17030
location: 3391..3945
location: region:3391-3945:1
so has part: feature:3391-3945:1:exon

WP_243705450.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3391-3945:1:exon

KSAC_RS17035
type: Gene
subclass of: SO_0000704
RO_0002162: 265959
locus tag: KSAC_RS17035
old locus tag: KSAC_34900
so part of: sequence
location: 3942..4355
location: region:3942-4355:1
so has part: feature:3942-4355:1:exon
subclass of: SO_0000010

position:3942:1
position: 3942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4355:1
position: 4355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3942-4355:1:exon

KSAC_RS17035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 265959
locus tag: KSAC_RS17035
old locus tag: KSAC_34900
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTDGSTELVRLYPRQNLAVVNWMHATSKRPMKAIRVWALLFDHLMPHTGQIMLTRDEIAEKIGQRPQEISQIMNELVRFGAIFSKREKVPGMRGPGIVRYFMNKHVAEVGSRATQEELALIPRPGAKLAVVQGGKKA
SIO_010081: KSAC_RS17035
subclass of: SO_0000673
so part of: KSAC_RS17035
location: 3942..4355
location: region:3942-4355:1
so has part: feature:3942-4355:1:exon

WP_243705451.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3942-4355:1:exon